Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001992

Physical Location & Seq

Genomic Coordinates Forward (+)

21661444 .. 21663843

Gene Structure 2400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G53400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCGATTATCTCTGAGGTAGAAGAAGAAAGCAGTAGCAGCCGACCCATGATATTTCCCTTTAGGGCAACACTCAGTTCTGCAAACCCATTAGGGTTTTTGGAGAAAGTTTTCGACTTTCTCGGAGAACAGAGCGATTTTCTCAAGAAACCCTCCGCGGAGGACGAGATCGTCGTCGCGGTTAGGGCGGCGAAGGAGAAGTTGAAAAAGGCTGAGAAGAAGAAAGCTGAGAAGGAGAGTGTGAAGCCTGTGGAGAAGAAAGCCGAGAAGGAAATTGTTAAGCTTGTGGAGAAGAAGGTAGAGAAGGAGAGTGTCAAGCCAACTATAGCTGCTTCAAGTGCTGAGCCTATAGAAGTGGAGAAGCCTAAGGAGGAAGAGGAGAAGAAGGAATCTGGTCCCATTGTTCCTAACAAAGGTAATGGAACTGATCTTGAGAACTACTCATGGATCCAGAATCTCCAGGAGGTTACAGTTAACATTCCAGTGCCTACTGGGACTAAAGCACGGACTGTTGTATGTGAGATTAAGAAAAACCGTCTCAAGGTTGGTCTCAAAGGCCAGGATCCAATCGTCGATGGGGAGCTCTACCGATCTGTGAAGCCTGATGACTGCTACTGGAATATCGAGGATCAAAAGGTGATTTCGATTCTCTTGACTAAGTCTGATCAGATGGAGTGGTGGAAATGCTGTGTGAAAGGTGAACCTGAAATCGATACTCAGAAAGTTGAACCAGAGACTAGTAAATTAGGTGACCTTGATCCAGAAACTCGCTCGACTGTTGAGAAAATGATGTTTGATCAAAGGCAAAAGCAGATGGGTCTTCCAACAAGCGAGGAGCTACAGAAGCAAGAGATCCTTAAGAAATTCATGTCTGAGCATCCGGAGATGGACTTCTCAAATGCAAAGTTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

304

Amino Acids

34.51

Weight (kDa)

5.3

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	146 - 220	7.6e-21	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27890 AT5G53400
fragaria_vesca	FvH4_1g23100 FvH4_1g24630 FvH4_7g31690
malus_domestica	MD01G1220500.v1.1 MD07G1289500.v1.1
prunus_persica	Prupe.2G310800_v2.0.a1 Prupe.7G105200_v2.0.a1
pyrus_communis	pycom01g23010 pycom07g26230
rosa_chinensis	RchiOBHm_Chr1g0380871 RchiOBHm_Chr2g0117791 RchiOBHm_Chr3g0471811
rosa_laevigata	RLG00000018374 RLG00000024126 RLG00000024128 RLG00000026266
rosa_multiflora	Rmu_co8012830.1_g000001 Rmu_sc0002570.1_g000001 Rmu_sc0002962.1_g000016 Rmu_sc0004622.1_g000002 Rmu_sc0005241.1_g000009
rosa_roxburghii	Rroxscaffold_2G00126210 Rroxscaffold_4G00279000 Rroxscaffold_6G00409530 Rroxscaffold_7G00214800
rosa_rugosa	Rorug01G0424600 Rorug01G0424600 Rorug02G0214200 Rorug05G0519100
rosa_samantha	Rh1BG404600 Rh1DG435000 Rh2AG270200 Rh2BG281700 Rh2CG269800 Rh2DG278100 Rh2DG295900 Rh3AG171300 Rh3CG187800 Rh3DG177500
rosa_wichuraiana	Rw1G039130 Rw2G021350 Rw3G016870 Rw3G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AccII	CGCG	2 cut(s)	158, 179
AccIII	TCCGGA	1 cut(s)	880
AciI	CCGC	4 cut(s)	156, 158, 179, 188
AclWI	GGATC	7 cut(s)	442, 455, 557, 570, 636, 752, 847
AcsI	RAATTY	1 cut(s)	863
AfiI	CCNNNNNNNGG	2 cut(s)	413, 541
AflII	CTTAAG	1 cut(s)	857
AgsI	TTSAA	3 cut(s)	205, 336, 728
AhlI	ACTAGT	1 cut(s)	737
AjnI	CCWGG	2 cut(s)	459, 558
AluBI	AGCT	5 cut(s)	227, 283, 329, 583, 838
AluI	AGCT	5 cut(s)	227, 283, 329, 583, 838
Alw21I	GWGCWC	1 cut(s)	585
Alw26I	GTCTC	3 cut(s)	542, 554, 728
AlwI	GGATC	7 cut(s)	442, 455, 557, 570, 636, 752, 847
Aor13HI	TCCGGA	1 cut(s)	880
AoxI	GGCC	1 cut(s)	556
ApeKI	GCWGC	2 cut(s)	39, 329
ApoI	RAATTY	1 cut(s)	863
Asp700I	GAANNNNTTC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	395
AsuHPI	GGTGA	3 cut(s)	649, 710, 761
AvaII	GGWCC	1 cut(s)	395
AxyI	CCTNAGG	1 cut(s)	366
BamHI	GGATCC	2 cut(s)	447, 562
BanII	GRGCYC	1 cut(s)	585
BbsI	GAAGAC	1 cut(s)	812
Bbv12I	GWGCWC	1 cut(s)	585
BbvI	GCAGC	2 cut(s)	51, 316
BccI	CCATC	4 cut(s)	569, 664, 808, 880
BciT130I	CCWGG	2 cut(s)	461, 560
BclI	TGATCA	2 cut(s)	664, 796
BcoDI	GTCTC	3 cut(s)	542, 554, 728
BcuI	ACTAGT	1 cut(s)	737
BfaI	CTAG	1 cut(s)	738
BfmI	CTRYAG	3 cut(s)	324, 348, 839
BfrI	CTTAAG	1 cut(s)	857
BisI	GCNGC	3 cut(s)	40, 189, 330
BlpI	GCTNAGC	1 cut(s)	342
BlsI	GCNGC	3 cut(s)	41, 190, 331
Bme1390I	CCNGG	2 cut(s)	461, 560
Bme18I	GGWCC	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	3 cut(s)	397, 449, 564
BmrFI	CCNGG	2 cut(s)	461, 560
BmrI	ACTGGG	1 cut(s)	501
BmsI	GCATC	1 cut(s)	886
BmuI	ACTGGG	1 cut(s)	501
BpiI	GAAGAC	1 cut(s)	812
BplI	GAGNNNNNCTC	2 cut(s)	425, 457
BpmI	CTGGAG	1 cut(s)	443
Bpu1102I	GCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	3 cut(s)	128, 452, 524
Bsa29I	ATCGAT	1 cut(s)	711
BsaI	GGTCTC	1 cut(s)	554
BsaJI	CCNNGG	1 cut(s)	156
BsaWI	WCCGGW	1 cut(s)	880
Bsc4I	CCNNNNNNNGG	2 cut(s)	413, 541
Bse1I	ACTGG	3 cut(s)	482, 496, 620
Bse21I	CCTNAGG	1 cut(s)	366
BseAI	TCCGGA	1 cut(s)	880
BseBI	CCWGG	2 cut(s)	461, 560
BseCI	ATCGAT	1 cut(s)	711
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	1 cut(s)	877
BseLI	CCNNNNNNNGG	2 cut(s)	413, 541
BseMII	CTCAG	7 cut(s)	6, 88, 204, 219, 333, 731, 864
BseNI	ACTGG	3 cut(s)	482, 496, 620
BseRI	GAGGAG	2 cut(s)	392, 848
BseXI	GCAGC	2 cut(s)	51, 316
Bsh1236I	CGCG	2 cut(s)	158, 179
BshFI	GGCC	1 cut(s)	558
BshVI	ATCGAT	1 cut(s)	711
BsiHKAI	GWGCWC	1 cut(s)	585
BsiSI	CCGG	1 cut(s)	881
BslFI	GGGAC	2 cut(s)	381, 508
BslI	CCNNNNNNNGG	2 cut(s)	413, 541
BsmAI	GTCTC	3 cut(s)	542, 554, 728
BsmBI	CGTCTC	1 cut(s)	542
BsmFI	GGGAC	2 cut(s)	381, 508
BsnI	GGCC	1 cut(s)	558
Bso31I	GGTCTC	1 cut(s)	554
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp13I	TCCGGA	1 cut(s)	880
Bsp1720I	GCTNAGC	1 cut(s)	342
BspACI	CCGC	4 cut(s)	156, 158, 179, 188
BspANI	GGCC	1 cut(s)	558
BspCNI	CTCAG	7 cut(s)	7, 87, 205, 220, 334, 730, 865
BspDI	ATCGAT	1 cut(s)	711
BspEI	TCCGGA	1 cut(s)	880
BspFNI	CGCG	2 cut(s)	158, 179
BspLI	GGNNCC	3 cut(s)	397, 449, 564
BspPI	GGATC	7 cut(s)	442, 455, 557, 570, 636, 752, 847
BspTI	CTTAAG	1 cut(s)	857
BspTNI	GGTCTC	1 cut(s)	554
BsrI	ACTGG	3 cut(s)	482, 496, 620
BssECI	CCNNGG	1 cut(s)	156
Bst2UI	CCWGG	2 cut(s)	461, 560
Bst4CI	ACNGT	4 cut(s)	472, 511, 536, 778
Bst6I	CTCTTC	1 cut(s)	369
BstAFI	CTTAAG	1 cut(s)	857
BstDEI	CTNAG	9 cut(s)	15, 74, 213, 228, 342, 366, 657, 717, 873
BstDSI	CCRYGG	1 cut(s)	156
BstEII	GGTNACC	1 cut(s)	749
BstENI	CCTNNNNNAGG	1 cut(s)	411
BstF5I	GGATG	1 cut(s)	877
BstFNI	CGCG	2 cut(s)	158, 179
BstMAI	GTCTC	3 cut(s)	542, 554, 728
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 185, 338, 844
BstNI	CCWGG	2 cut(s)	461, 560
BstPI	GGTNACC	1 cut(s)	749
BstSCI	CCNGG	2 cut(s)	459, 558
BstSFI	CTRYAG	3 cut(s)	324, 348, 839
BstUI	CGCG	2 cut(s)	158, 179
BstV1I	GCAGC	2 cut(s)	51, 316
BstV2I	GAAGAC	1 cut(s)	812
BstX2I	RGATCY	3 cut(s)	447, 562, 852
BstYI	RGATCY	3 cut(s)	447, 562, 852
Bsu15I	ATCGAT	1 cut(s)	711
Bsu36I	CCTNAGG	1 cut(s)	366
BsuRI	GGCC	1 cut(s)	558
BsuTUI	ATCGAT	1 cut(s)	711
BtgI	CCRYGG	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	877
BtsIMutI	CAGTG	1 cut(s)	489
Cfr13I	GGNCC	1 cut(s)	395
Cfr42I	CCGCGG	1 cut(s)	159
ClaI	ATCGAT	1 cut(s)	711
CviAII	CATG	3 cut(s)	49, 444, 868
DdeI	CTNAG	9 cut(s)	15, 74, 213, 228, 342, 366, 657, 717, 873
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Ecl136II	GAGCTC	1 cut(s)	583
Eco24I	GRGCYC	1 cut(s)	585
Eco31I	GGTCTC	1 cut(s)	554
Eco47I	GGWCC	1 cut(s)	395
Eco53kI	GAGCTC	1 cut(s)	583
Eco81I	CCTNAGG	1 cut(s)	366
Eco91I	GGTNACC	1 cut(s)	749
EcoICRI	GAGCTC	1 cut(s)	583
EcoNI	CCTNNNNNAGG	1 cut(s)	411
EcoO65I	GGTNACC	1 cut(s)	749
EcoRII	CCWGG	2 cut(s)	459, 558
EcoT38I	GRGCYC	1 cut(s)	585
Esp3I	CGTCTC	1 cut(s)	542
FaeI	CATG	3 cut(s)	52, 447, 871
FaiI	YATR	6 cut(s)	50, 326, 350, 445, 517, 869
FalI	AAGNNNNNCTT	2 cut(s)	840, 872
FaqI	GGGAC	2 cut(s)	381, 508
FatI	CATG	3 cut(s)	48, 443, 867
FbaI	TGATCA	2 cut(s)	664, 796
Fnu4HI	GCNGC	3 cut(s)	40, 189, 330
FokI	GGATG	1 cut(s)	864
FriOI	GRGCYC	1 cut(s)	585
Fsp4HI	GCNGC	3 cut(s)	40, 189, 330
FspBI	CTAG	1 cut(s)	738
GluI	GCNGC	3 cut(s)	40, 189, 330
GsuI	CTGGAG	1 cut(s)	443
HaeIII	GGCC	1 cut(s)	558
HapII	CCGG	1 cut(s)	881
Hin1II	CATG	3 cut(s)	52, 447, 871
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	3 cut(s)	389, 454, 646
HpaI	GTTAAC	1 cut(s)	475
HpaII	CCGG	1 cut(s)	881
HphI	GGTGA	3 cut(s)	649, 710, 761
Hpy166II	GTNNAC	2 cut(s)	475, 701
Hpy188I	TCNGA	6 cut(s)	16, 125, 664, 669, 720, 874
Hpy188III	TCNNGA	6 cut(s)	145, 431, 451, 652, 761, 881
Hpy8I	GTNNAC	2 cut(s)	475, 701
Hpy99I	CGWCG	3 cut(s)	176, 179, 575
HpyAV	CCTTC	6 cut(s)	187, 226, 262, 289, 298, 379
HpyCH4III	ACNGT	4 cut(s)	472, 511, 536, 778
HpyCH4V	TGCA	2 cut(s)	83, 902
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 185, 338, 844
HpyF3I	CTNAG	9 cut(s)	15, 74, 213, 228, 342, 366, 657, 717, 873
Hsp92II	CATG	3 cut(s)	52, 447, 871
Kpn2I	TCCGGA	1 cut(s)	880
Ksp22I	TGATCA	2 cut(s)	664, 796
KspAI	GTTAAC	1 cut(s)	475
KspI	CCGCGG	1 cut(s)	159
LmnI	GCTCC	2 cut(s)	580, 835
Lsp1109I	GCAGC	2 cut(s)	51, 316
LweI	GCATC	1 cut(s)	886
MaeI	CTAG	1 cut(s)	738
MaeIII	GTNAC	2 cut(s)	466, 749
MboII	GAAGA	9 cut(s)	35, 38, 229, 232, 268, 304, 386, 394, 812
MflI	RGATCY	3 cut(s)	447, 562, 852
MhlI	GDGCHC	1 cut(s)	585
MluCI	AATT	3 cut(s)	273, 743, 863
MmeI	TCCRAC	1 cut(s)	848
MnlI	CCTC	8 cut(s)	10, 154, 163, 364, 370, 457, 619, 826
MroI	TCCGGA	1 cut(s)	880
MroXI	GAANNNNTTC	1 cut(s)	110
MseI	TTAA	5 cut(s)	279, 474, 525, 858, 909
MslI	CAYNNNNRTG	1 cut(s)	482
MspA1I	CMGCKG	1 cut(s)	158
MspCI	CTTAAG	1 cut(s)	857
MspI	CCGG	1 cut(s)	881
MspR9I	CCNGG	2 cut(s)	461, 560
MvaI	CCWGG	2 cut(s)	461, 560
MvnI	CGCG	2 cut(s)	158, 179
MwoI	GCNNNNNNNGC	4 cut(s)	39, 185, 338, 844
NlaIII	CATG	3 cut(s)	52, 447, 871
NlaIV	GGNNCC	3 cut(s)	397, 449, 564
NmeAIII	GCCGAG	1 cut(s)	289
NmuCI	GTSAC	1 cut(s)	749
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	110
PfeI	GAWTC	3 cut(s)	389, 454, 646
PflFI	GACNNNGTC	1 cut(s)	658
PfoI	TCCNGGA	1 cut(s)	459
PkrI	GCNGC	3 cut(s)	41, 190, 331
Psp124BI	GAGCTC	1 cut(s)	585
Psp6I	CCWGG	2 cut(s)	459, 558
PspEI	GGTNACC	1 cut(s)	749
PspGI	CCWGG	2 cut(s)	459, 558
PspN4I	GGNNCC	3 cut(s)	397, 449, 564
PspPI	GGNCC	1 cut(s)	395
PsuI	RGATCY	3 cut(s)	447, 562, 852
PsyI	GACNNNGTC	1 cut(s)	658
RseI	CAYNNNNRTG	1 cut(s)	482
SacI	GAGCTC	1 cut(s)	585
SacII	CCGCGG	1 cut(s)	159
SaqAI	TTAA	5 cut(s)	279, 474, 525, 858, 909
SatI	GCNGC	3 cut(s)	40, 189, 330
Sau96I	GGNCC	1 cut(s)	395
ScrFI	CCNGG	2 cut(s)	461, 560
SduI	GDGCHC	1 cut(s)	585
SfaNI	GCATC	1 cut(s)	886
SfcI	CTRYAG	3 cut(s)	324, 348, 839
Sfr303I	CCGCGG	1 cut(s)	159
SgrBI	CCGCGG	1 cut(s)	159
SinI	GGWCC	1 cut(s)	395
SmiMI	CAYNNNNRTG	1 cut(s)	482
SmlI	CTYRAG	4 cut(s)	143, 431, 539, 857
SmoI	CTYRAG	4 cut(s)	143, 431, 539, 857
SpeI	ACTAGT	1 cut(s)	737
Sse9I	AATT	3 cut(s)	273, 743, 863
SsiI	CCGC	4 cut(s)	156, 158, 179, 188
SspMI	CTAG	1 cut(s)	738
SstI	GAGCTC	1 cut(s)	585
StyD4I	CCNGG	2 cut(s)	459, 558
TaaI	ACNGT	4 cut(s)	472, 511, 536, 778
TaqI	TCGA	6 cut(s)	114, 573, 624, 644, 711, 773
TasI	AATT	3 cut(s)	273, 743, 863
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	3 cut(s)	389, 454, 646
Tru1I	TTAA	5 cut(s)	279, 474, 525, 858, 909
Tru9I	TTAA	5 cut(s)	279, 474, 525, 858, 909
TscAI	CASTG	1 cut(s)	489
TseFI	GTSAC	1 cut(s)	749
TseI	GCWGC	2 cut(s)	39, 329
Tsp45I	GTSAC	1 cut(s)	749
TspDTI	ATGAA	1 cut(s)	856
TspGWI	ACGGA	1 cut(s)	520
TspRI	CASTG	1 cut(s)	489
Tth111I	GACNNNGTC	1 cut(s)	658
Vha464I	CTTAAG	1 cut(s)	857
VpaK11BI	GGWCC	1 cut(s)	395
XagI	CCTNNNNNAGG	1 cut(s)	411
XapI	RAATTY	1 cut(s)	863
XmnI	GAANNNNTTC	1 cut(s)	110
XspI	CTAG	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.