Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001992

Physical Location & Seq

Genomic Coordinates Forward (+)

65441089 .. 65448473

Gene Structure 7385 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00214800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTCAAGAAGGATCGAGAGTGTGCAGGCGGTGAGGGAGAAGGAGAGGAAGAAGAGGCGGGCGGAGGAGGAGGAGAAGAAGAAGAGATGGGTGGAGGCCAAGGCCAAGGCGGAGCGCAAGGTGGTGGAGGAGAAGAAGGACAAGGAGGAGGAGGAGGAGGAGGAGAGTGGAAAGAGAGTTCCAAACAAAGGGAATGGGCTTGATATGGAGAAATACTCATGGACCCAAAGTCTGCAGGAGGTTAATATAATCATTCCAGTGCCTGCTGGAACTAAGTCAAGGGATATTGTTTATGAGGCAAAGAAGAACCGTCAAAAAATACTCTTATCAAGTGCAGGGAAGAAAACGGTGGAGTACACGGTGCCATTAAGAGAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

126

Amino Acids

14.79

Weight (kDa)

9.42

Isoelectric Point (pI)

86.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	70 - 114	4.3e-06	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27890 AT5G53400
fragaria_vesca	FvH4_1g23100 FvH4_1g24630 FvH4_7g31690
malus_domestica	MD01G1220500.v1.1 MD07G1289500.v1.1
prunus_persica	Prupe.2G310800_v2.0.a1 Prupe.7G105200_v2.0.a1
pyrus_communis	pycom01g23010 pycom07g26230
rosa_chinensis	RchiOBHm_Chr1g0380871 RchiOBHm_Chr2g0117791 RchiOBHm_Chr3g0471811
rosa_laevigata	RLG00000018374 RLG00000024126 RLG00000024128 RLG00000026266
rosa_multiflora	Rmu_co8012830.1_g000001 Rmu_sc0002570.1_g000001 Rmu_sc0002962.1_g000016 Rmu_sc0004622.1_g000002 Rmu_sc0005241.1_g000009
rosa_roxburghii	Rroxscaffold_2G00126210 Rroxscaffold_4G00279000 Rroxscaffold_6G00409530 Rroxscaffold_7G00214800
rosa_rugosa	Rorug01G0424600 Rorug01G0424600 Rorug02G0214200 Rorug05G0519100
rosa_samantha	Rh1BG404600 Rh1DG435000 Rh2AG270200 Rh2BG281700 Rh2CG269800 Rh2DG278100 Rh2DG295900 Rh3AG171300 Rh3CG187800 Rh3DG177500
rosa_wichuraiana	Rw1G039130 Rw2G021350 Rw3G016870 Rw3G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	361
AciI	CCGC	4 cut(s)	29, 58, 62, 110
AclWI	GGATC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	188
AhdI	GACNNNNNGTC	1 cut(s)	228
AloI	GAACNNNNNNTCC	2 cut(s)	162, 194
AlwI	GGATC	1 cut(s)	20
AlwNI	CAGNNNCTG	1 cut(s)	263
AoxI	GGCC	2 cut(s)	96, 102
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	43
AvaII	GGWCC	1 cut(s)	222
BanI	GGYRCC	1 cut(s)	361
BccI	CCATC	1 cut(s)	81
BfmI	CTRYAG	1 cut(s)	233
Bme18I	GGWCC	1 cut(s)	222
BmeRI	GACNNNNNGTC	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	2 cut(s)	224, 363
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
BsaJI	CCNNGG	2 cut(s)	99, 105
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	257
BseDI	CCNNGG	2 cut(s)	99, 105
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseNI	ACTGG	1 cut(s)	257
BsgI	GTGCAG	2 cut(s)	44, 354
BshFI	GGCC	2 cut(s)	98, 104
BshNI	GGYRCC	1 cut(s)	361
BslI	CCNNNNNNNGG	1 cut(s)	188
BsnI	GGCC	2 cut(s)	98, 104
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	4 cut(s)	29, 58, 62, 110
BspANI	GGCC	2 cut(s)	98, 104
BspLI	GGNNCC	2 cut(s)	224, 363
BspMAI	CTGCAG	1 cut(s)	237
BspPI	GGATC	1 cut(s)	20
BspT107I	GGYRCC	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	257
BssECI	CCNNGG	2 cut(s)	99, 105
BssMI	GATC	1 cut(s)	12
BssT1I	CCWWGG	2 cut(s)	99, 105
Bst4CI	ACNGT	3 cut(s)	311, 349, 361
Bst6I	CTCTTC	2 cut(s)	47, 77
BstC8I	GCNNGC	3 cut(s)	27, 60, 264
BstDEI	CTNAG	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstSFI	CTRYAG	1 cut(s)	233
BsuRI	GGCC	2 cut(s)	98, 104
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	3 cut(s)	27, 60, 264
CaiI	CAGNNNCTG	1 cut(s)	263
CfoI	GCGC	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	1 cut(s)	219
CviJI	RGCY	3 cut(s)	98, 104, 199
CviKI_1	RGCY	3 cut(s)	98, 104, 199
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
DriI	GACNNNNNGTC	1 cut(s)	228
Eam1104I	CTCTTC	2 cut(s)	47, 77
Eam1105I	GACNNNNNGTC	1 cut(s)	228
EarI	CTCTTC	2 cut(s)	47, 77
EciI	GGCGGA	2 cut(s)	77, 125
Eco130I	CCWWGG	2 cut(s)	99, 105
Eco47I	GGWCC	1 cut(s)	222
EcoT14I	CCWWGG	2 cut(s)	99, 105
ErhI	CCWWGG	2 cut(s)	99, 105
FaeI	CATG	1 cut(s)	222
FaiI	YATR	4 cut(s)	206, 220, 248, 294
FatI	CATG	1 cut(s)	218
FauI	CCCGC	1 cut(s)	51
GlaI	GCGC	1 cut(s)	116
HaeIII	GGCC	2 cut(s)	98, 104
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	222
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	357
Hpy188III	TCNNGA	2 cut(s)	6, 16
Hpy8I	GTNNAC	1 cut(s)	357
HpyAV	CCTTC	3 cut(s)	3, 34, 130
HpyCH4III	ACNGT	3 cut(s)	311, 349, 361
HpyCH4V	TGCA	3 cut(s)	25, 235, 335
HpyF3I	CTNAG	1 cut(s)	273
Hsp92II	CATG	1 cut(s)	222
HspAI	GCGC	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	6 cut(s)	11, 221, 252, 270, 276, 321
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	8 cut(s)	61, 64, 88, 91, 94, 145, 316, 352
MseI	TTAA	2 cut(s)	243, 368
MslI	CAYNNNNRTG	1 cut(s)	257
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	1 cut(s)	222
NlaIV	GGNNCC	2 cut(s)	224, 363
PspN4I	GGNNCC	2 cut(s)	224, 363
PspPI	GGNCC	1 cut(s)	222
PstI	CTGCAG	1 cut(s)	237
PstNI	CAGNNNCTG	1 cut(s)	263
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	243, 368
Sau3AI	GATC	1 cut(s)	12
Sau96I	GGNCC	1 cut(s)	222
SetI	ASST	2 cut(s)	123, 243
SfcI	CTRYAG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	257
SsiI	CCGC	4 cut(s)	29, 58, 62, 110
StyI	CCWWGG	2 cut(s)	99, 105
TaaI	ACNGT	3 cut(s)	311, 349, 361
TaqI	TCGA	1 cut(s)	15
TatI	WGTACW	1 cut(s)	354
Tru1I	TTAA	2 cut(s)	243, 368
Tru9I	TTAA	2 cut(s)	243, 368
TscAI	CASTG	1 cut(s)	264
TspRI	CASTG	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.