Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003380

Physical Location & Seq

Genomic Coordinates Reverse (-)

14323296 .. 14325361

Gene Structure 2066 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G29080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTCTGTATCTGTAGCAGCAGAGCATGATTACATAGGTTTGTCAGAGTTTCCAACCATGGAAGCAACAACAATGTCTGACAAAACCAAAACCAGAGACAATAACAACGGTCTCAATTTCAAGGCTACCGAGTTAAGACTCGGTTTACCCGGTTCTGAGTCGCCGGAGCGAGTCGACTCAAGATTCTTGGCTCTCAACAAGAGTAGCTGTCCCGTGTCAGGTGCCAAAAGGGTGTTCTCCGACGCTATTAACGACTCTAACAAATGGGTCTTCTCTCCTGGATCCACTACTGCTACTGGTGATGTCGGCTCGGGTTCTGGTCCCCGTACCTCCGTCGTTAAAGATGGAAAGTCGACAACTTTCACTAAACCGGCTGTTCCGGTTAAGGAGAAGAAGAGCTCTGCTACAGCTCCAGCTTCAAAAGCACAAGTGGTGGGATGGCCACCAATAAGATCATTCAGGAAGAACTCAATGGCTTCTTCTCAATCTCAGAAACCTGGTAATAACTCAGAGACTGAAGAAGCAGAAGCTAAGTCTGGACCAGAACAACCTTGCTTGTATGTCAAAGTGAGTATGGAAGGTGCTCCTTACTTGAGGAAAATCGATCTCAAGACTTACAAAAGCTACCTTGAGCTCTCTTCTGCTCTTGAGAAGATGTTCAGTTGCTTCACCATTGGTCAGTTTGGTTCTCATGGAGGGTGTGGCAGAGATGGGTTAAACGAGAGTCGCTTGACTGATCTCTTGCGTGGTTCTGAGTATGTTGTAACCTATGAAGATAAAGACAGTGACTGGATGCTGGTCGGAGATGTCCCTTGGGAAATGTTTATATGCTCCTGCAAGAAGCTGAGAATCATGAAGAGCTCTGAGGCTATCGGCTTAGCTCCAAGGGTGATGGAGAAGTGCAGAAGCAGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

305

Amino Acids

33.2

Weight (kDa)

8.84

Isoelectric Point (pI)

49.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	42 - 296	3.7e-88	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29080
fragaria_vesca	FvH4_1g05630 FvH4_6g31930
malus_domestica	MD02G1057200.v1.1 MD09G1208000.v1.1 MD15G1191800.v1.1 MD17G1189100.v1.1
prunus_persica	Prupe.3G064200_v2.0.a1 Prupe.7G225600_v2.0.a1
pyrus_communis	pycom02g04630 pycom09g12420 pycom15g17170 pycom17g19740
rosa_chinensis	RchiOBHm_Chr2g0091261 RchiOBHm_Chr2g0139301
rosa_laevigata	RLG00000016198 RLG00000019806
rosa_multiflora	Rmu_sc0002270.1_g000025 Rmu_sc0002525.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105480 Rroxscaffold_2G00150310
rosa_rugosa	Rorug02G0015100 Rorug02G0015200 Rorug02G0356800 Rorug02G0356900
rosa_samantha	Rh2AG060800 Rh2AG406600 Rh2BG059500 Rh2BG417000 Rh2CG061400 Rh2CG392800 Rh2DG060100 Rh2DG426100
rosa_wichuraiana	Rw2G004900 Rw2G032950 Rw2G033210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	221
AccI	GTMKAC	2 cut(s)	174, 353
AclWI	GGATC	2 cut(s)	276, 289
AcoI	YGGCCR	1 cut(s)	440
AcuI	CTGAAG	1 cut(s)	537
AfaI	GTAC	1 cut(s)	328
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgsI	TTSAA	2 cut(s)	121, 420
AjnI	CCWGG	2 cut(s)	277, 496
AjuI	GAANNNNNNNTTGG	2 cut(s)	218, 250
Alw21I	GWGCWC	4 cut(s)	401, 586, 636, 863
Alw26I	GTCTC	3 cut(s)	90, 116, 506
AlwI	GGATC	2 cut(s)	276, 289
AlwNI	CAGNNNCTG	2 cut(s)	515, 789
Ama87I	CYCGRG	1 cut(s)	310
AoxI	GGCC	1 cut(s)	440
ApeKI	GCWGC	1 cut(s)	17
Asp700I	GAANNNNTTC	1 cut(s)	656
AspS9I	GGNCC	2 cut(s)	320, 539
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	3 cut(s)	311, 661, 901
AvaI	CYCGRG	1 cut(s)	310
AvaII	GGWCC	2 cut(s)	320, 539
BalI	TGGCCA	1 cut(s)	442
BamHI	GGATCC	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	221
BanII	GRGCYC	3 cut(s)	401, 636, 863
BbsI	GAAGAC	1 cut(s)	262
Bbv12I	GWGCWC	4 cut(s)	401, 586, 636, 863
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	4 cut(s)	338, 432, 704, 886
BciT130I	CCWGG	2 cut(s)	279, 498
BcnI	CCSGG	1 cut(s)	150
BcoDI	GTCTC	3 cut(s)	90, 116, 506
BfaI	CTAG	1 cut(s)	916
BfmI	CTRYAG	2 cut(s)	12, 405
BisI	GCNGC	1 cut(s)	18
BlpI	GCTNAGC	1 cut(s)	877
BlsI	GCNGC	1 cut(s)	19
Bme1390I	CCNGG	3 cut(s)	150, 279, 498
Bme18I	GGWCC	2 cut(s)	320, 539
BmeT110I	CYCGRG	1 cut(s)	310
BmgT120I	GGNCC	2 cut(s)	320, 539
BmiI	GGNNCC	3 cut(s)	223, 283, 322
BmrFI	CCNGG	3 cut(s)	150, 279, 498
BmsI	GCATC	1 cut(s)	783
BpiI	GAAGAC	1 cut(s)	262
BpmI	CTGGAG	1 cut(s)	396
Bpu1102I	GCTNAGC	1 cut(s)	877
BpuEI	CTTGAG	5 cut(s)	163, 593, 613, 650, 668
BpuMI	CCSGG	1 cut(s)	150
Bsa29I	ATCGAT	1 cut(s)	603
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	3 cut(s)	57, 812, 884
BsaWI	WCCGGW	1 cut(s)	379
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse118I	RCCGGY	1 cut(s)	370
Bse1I	ACTGG	2 cut(s)	301, 794
BseBI	CCWGG	2 cut(s)	279, 498
BseCI	ATCGAT	1 cut(s)	603
BseDI	CCNNGG	3 cut(s)	57, 812, 884
BseGI	GGATG	2 cut(s)	443, 798
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMII	CTCAG	6 cut(s)	147, 503, 522, 744, 836, 855
BseNI	ACTGG	2 cut(s)	301, 794
BseXI	GCAGC	1 cut(s)	29
BshFI	GGCC	1 cut(s)	442
BshNI	GGYRCC	1 cut(s)	221
BshVI	ATCGAT	1 cut(s)	603
BsiHKAI	GWGCWC	4 cut(s)	401, 586, 636, 863
BsiHKCI	CYCGRG	1 cut(s)	310
BsiSI	CCGG	4 cut(s)	150, 164, 371, 380
BslFI	GGGAC	3 cut(s)	195, 306, 794
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	3 cut(s)	90, 116, 506
BsmFI	GGGAC	3 cut(s)	195, 306, 794
BsnI	GGCC	1 cut(s)	442
Bso31I	GGTCTC	1 cut(s)	116
BsoBI	CYCGRG	1 cut(s)	310
Bsp1286I	GDGCHC	4 cut(s)	401, 586, 636, 863
Bsp143I	GATC	4 cut(s)	281, 452, 604, 736
Bsp1720I	GCTNAGC	1 cut(s)	877
Bsp19I	CCATGG	1 cut(s)	57
BspANI	GGCC	1 cut(s)	442
BspCNI	CTCAG	6 cut(s)	148, 502, 521, 745, 837, 856
BspDI	ATCGAT	1 cut(s)	603
BspHI	TCATGA	1 cut(s)	852
BspLI	GGNNCC	3 cut(s)	223, 283, 322
BspPI	GGATC	2 cut(s)	276, 289
BspQI	GCTCTTC	2 cut(s)	389, 851
BspT107I	GGYRCC	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	370
BsrI	ACTGG	2 cut(s)	301, 794
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	3 cut(s)	57, 812, 884
BssMI	GATC	4 cut(s)	281, 452, 604, 736
BssT1I	CCWWGG	3 cut(s)	57, 812, 884
Bst2UI	CCWGG	2 cut(s)	279, 498
Bst4CI	ACNGT	2 cut(s)	110, 785
Bst6I	CTCTTC	3 cut(s)	389, 643, 851
BstDEI	CTNAG	8 cut(s)	156, 489, 508, 531, 753, 845, 864, 877
BstDSI	CCRYGG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	443, 798
BstKTI	GATC	4 cut(s)	284, 455, 607, 739
BstMAI	GTCTC	3 cut(s)	90, 116, 506
BstMBI	GATC	4 cut(s)	281, 452, 604, 736
BstMWI	GCNNNNNNNGC	1 cut(s)	422
BstNI	CCWGG	2 cut(s)	279, 498
BstSCI	CCNGG	3 cut(s)	148, 277, 496
BstSFI	CTRYAG	2 cut(s)	12, 405
BstV1I	GCAGC	1 cut(s)	29
BstV2I	GAAGAC	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	281
BstYI	RGATCY	1 cut(s)	281
Bsu15I	ATCGAT	1 cut(s)	603
BsuRI	GGCC	1 cut(s)	442
BsuTUI	ATCGAT	1 cut(s)	603
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	443, 798
BtsIMutI	CAGTG	1 cut(s)	790
CaiI	CAGNNNCTG	2 cut(s)	515, 789
CciI	TCATGA	1 cut(s)	852
Cfr10I	RCCGGY	1 cut(s)	370
Cfr13I	GGNCC	2 cut(s)	320, 539
ClaI	ATCGAT	1 cut(s)	603
CseI	GACGC	1 cut(s)	251
CsiI	ACCWGGT	1 cut(s)	496
Csp6I	GTAC	1 cut(s)	327
CviAII	CATG	4 cut(s)	26, 58, 692, 853
CviQI	GTAC	1 cut(s)	327
DdeI	CTNAG	8 cut(s)	156, 489, 508, 531, 753, 845, 864, 877
DpnI	GATC	4 cut(s)	283, 454, 606, 738
DpnII	GATC	4 cut(s)	281, 452, 604, 736
EaeI	YGGCCR	1 cut(s)	440
Eam1104I	CTCTTC	3 cut(s)	389, 643, 851
EarI	CTCTTC	3 cut(s)	389, 643, 851
Ecl136II	GAGCTC	3 cut(s)	399, 634, 861
Eco130I	CCWWGG	3 cut(s)	57, 812, 884
Eco24I	GRGCYC	3 cut(s)	401, 636, 863
Eco31I	GGTCTC	1 cut(s)	116
Eco47I	GGWCC	2 cut(s)	320, 539
Eco53kI	GAGCTC	3 cut(s)	399, 634, 861
Eco57I	CTGAAG	1 cut(s)	537
Eco88I	CYCGRG	1 cut(s)	310
EcoICRI	GAGCTC	3 cut(s)	399, 634, 861
EcoRII	CCWGG	2 cut(s)	277, 496
EcoT14I	CCWWGG	3 cut(s)	57, 812, 884
EcoT38I	GRGCYC	3 cut(s)	401, 636, 863
ErhI	CCWWGG	3 cut(s)	57, 812, 884
FaeI	CATG	4 cut(s)	29, 61, 695, 856
FaqI	GGGAC	3 cut(s)	195, 306, 794
FatI	CATG	4 cut(s)	25, 57, 691, 852
FblI	GTMKAC	2 cut(s)	174, 353
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	2 cut(s)	450, 805
FriOI	GRGCYC	3 cut(s)	401, 636, 863
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	1 cut(s)	916
GluI	GCNGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	442
HapII	CCGG	4 cut(s)	150, 164, 371, 380
HgaI	GACGC	1 cut(s)	251
Hin1II	CATG	4 cut(s)	29, 61, 695, 856
HincII	GTYRAC	2 cut(s)	175, 354
HindII	GTYRAC	2 cut(s)	175, 354
HinfI	GANTC	8 cut(s)	138, 158, 171, 176, 183, 254, 724, 849
HpaII	CCGG	4 cut(s)	150, 164, 371, 380
HphI	GGTGA	3 cut(s)	311, 661, 901
Hpy166II	GTNNAC	3 cut(s)	146, 175, 354
Hpy188I	TCNGA	9 cut(s)	46, 79, 157, 241, 492, 511, 754, 803, 865
Hpy188III	TCNNGA	6 cut(s)	180, 460, 537, 610, 647, 853
Hpy8I	GTNNAC	3 cut(s)	146, 175, 354
Hpy99I	CGWCG	2 cut(s)	245, 338
HpyAV	CCTTC	1 cut(s)	572
HpyCH4III	ACNGT	2 cut(s)	110, 785
HpyCH4V	TGCA	2 cut(s)	837, 903
HpyF10VI	GCNNNNNNNGC	1 cut(s)	422
HpyF3I	CTNAG	8 cut(s)	156, 489, 508, 531, 753, 845, 864, 877
Hsp92II	CATG	4 cut(s)	29, 61, 695, 856
Kzo9I	GATC	4 cut(s)	281, 452, 604, 736
LguI	GCTCTTC	2 cut(s)	389, 851
LmnI	GCTCC	5 cut(s)	166, 415, 589, 836, 886
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	1 cut(s)	783
MabI	ACCWGGT	1 cut(s)	496
MaeI	CTAG	1 cut(s)	916
MaeIII	GTNAC	2 cut(s)	763, 785
MalI	GATC	4 cut(s)	283, 454, 606, 738
MboI	GATC	4 cut(s)	281, 452, 604, 736
MflI	RGATCY	1 cut(s)	281
MhlI	GDGCHC	4 cut(s)	401, 586, 636, 863
MlsI	TGGCCA	1 cut(s)	442
MluCI	AATT	1 cut(s)	115
MluNI	TGGCCA	1 cut(s)	442
MlyI	GAGTC	6 cut(s)	132, 167, 170, 180, 248, 733
MmeI	TCCRAC	3 cut(s)	77, 264, 781
MnlI	CCTC	4 cut(s)	340, 588, 689, 859
Mox20I	TGGCCA	1 cut(s)	442
MroXI	GAANNNNTTC	1 cut(s)	656
MscI	TGGCCA	1 cut(s)	442
MseI	TTAA	5 cut(s)	134, 249, 339, 384, 716
Msp20I	TGGCCA	1 cut(s)	442
MspI	CCGG	4 cut(s)	150, 164, 371, 380
MspR9I	CCNGG	3 cut(s)	150, 279, 498
MvaI	CCWGG	2 cut(s)	279, 498
MwoI	GCNNNNNNNGC	1 cut(s)	422
NciI	CCSGG	1 cut(s)	150
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	4 cut(s)	281, 452, 604, 736
NlaIII	CATG	4 cut(s)	29, 61, 695, 856
NlaIV	GGNNCC	3 cut(s)	223, 283, 322
NmuCI	GTSAC	1 cut(s)	785
PagI	TCATGA	1 cut(s)	852
PciSI	GCTCTTC	2 cut(s)	389, 851
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	656
PfeI	GAWTC	2 cut(s)	183, 849
PfoI	TCCNGGA	1 cut(s)	277
PkrI	GCNGC	1 cut(s)	19
PleI	GAGTC	6 cut(s)	132, 166, 170, 179, 248, 732
PpsI	GAGTC	6 cut(s)	132, 166, 170, 179, 248, 732
Psp124BI	GAGCTC	3 cut(s)	401, 636, 863
Psp6I	CCWGG	2 cut(s)	277, 496
PspGI	CCWGG	2 cut(s)	277, 496
PspN4I	GGNNCC	3 cut(s)	223, 283, 322
PspPI	GGNCC	2 cut(s)	320, 539
PstNI	CAGNNNCTG	2 cut(s)	515, 789
PsuI	RGATCY	1 cut(s)	281
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
SacI	GAGCTC	3 cut(s)	401, 636, 863
SalI	GTCGAC	2 cut(s)	173, 352
SapI	GCTCTTC	2 cut(s)	389, 851
SaqAI	TTAA	5 cut(s)	134, 249, 339, 384, 716
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	4 cut(s)	281, 452, 604, 736
Sau96I	GGNCC	2 cut(s)	320, 539
SchI	GAGTC	6 cut(s)	132, 167, 170, 180, 248, 733
ScrFI	CCNGG	3 cut(s)	150, 279, 498
SduI	GDGCHC	4 cut(s)	401, 586, 636, 863
SexAI	ACCWGGT	1 cut(s)	496
SfaNI	GCATC	1 cut(s)	783
SfcI	CTRYAG	2 cut(s)	12, 405
SinI	GGWCC	2 cut(s)	320, 539
SmlI	CTYRAG	5 cut(s)	178, 592, 608, 629, 647
SmoI	CTYRAG	5 cut(s)	178, 592, 608, 629, 647
Sse9I	AATT	1 cut(s)	115
SspMI	CTAG	1 cut(s)	916
SstI	GAGCTC	3 cut(s)	401, 636, 863
StyD4I	CCNGG	3 cut(s)	148, 277, 496
StyI	CCWWGG	3 cut(s)	57, 812, 884
TaaI	ACNGT	2 cut(s)	110, 785
TaqI	TCGA	3 cut(s)	174, 353, 603
TasI	AATT	1 cut(s)	115
TfiI	GAWTC	2 cut(s)	183, 849
Tru1I	TTAA	5 cut(s)	134, 249, 339, 384, 716
Tru9I	TTAA	5 cut(s)	134, 249, 339, 384, 716
TscAI	CASTG	1 cut(s)	790
TseFI	GTSAC	1 cut(s)	785
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	785
TspDTI	ATGAA	2 cut(s)	786, 869
TspGWI	ACGGA	1 cut(s)	322
TspRI	CASTG	1 cut(s)	790
VpaK11BI	GGWCC	2 cut(s)	320, 539
XmiI	GTMKAC	2 cut(s)	174, 353
XmnI	GAANNNNTTC	1 cut(s)	656
XspI	CTAG	1 cut(s)	916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.