Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003380

Physical Location & Seq

Genomic Coordinates Reverse (-)

22550880 .. 22553660

Gene Structure 2781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1189100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGTCTAGGCCACTGGAGCTTGATTACATAGGCCTAACAGAGACTTCATCTTCTCCAATGGAAAGAAGCTCTGAGAAGATTTCATCTTCCACTTCCTCTACCTTCTCTTCCACAACAGCTGAGGAAAAGAGGACCTCCTCCTCTGCTATCAACCTCAGGGAGACTGAGCTCAGGCTCGGCCTTCCTGGTTCCCACTTCCCTGACAGAAAAAAACTGTCAGGGGTCTCAATTTTTGGGAAAGATTTGGAGGACAACAACAAGCCAAATGGGTGTTCTCCAAATCCTCCAAAGAACCCTGTGTCAGGGGCAAAAAGGGGATTCTCCGACGCCATTGATGGGTGTGAGAAATGGGTTTTCTCCATGGGTAATGGATCTGAGGTTGATGTGGGTAAAGCAGCAGTGTTGGGTTCTCCATTAGCCAAGAAAGAGGTTTCTTCTGTTCCTCTGCCACCAAAGCCATCAGCTCAGTTGGAGAAGAAGAAGCCTCAGGCCTCTGAGCATGCTGCTGCTCCTCCTGCTGCCAAGGCACAGGTGGTGGGATGGCCCCCAATTCGATCGTTTCGGAAGAACTCCATGGCCTCTAATTTGGCAAAGAACAACGACGATGCTGAGGGCAAACAAGGGTCCGGGTGCCTGTATGTGAAGGTTGGCATGGATGGTGCTCCGTACCTACGAAAGGTTGACCTTAAAACGTACAACAACTACACTGAACTTTCCATGGCTCTGGAGAAGATGTTTAGCTGCTTCACCATTGGGCAGAGCAGTTGTAATGGACTTCCGGAGCGAGATGGTCTGAGCGCGAGTCGTCTGATGGATCTTCTCAACGGTTCTGAATTTGTTCTGACTTATGAGGACAGGGATGATGACTGGATGCTTGTTGGTGATGTTCCTTGGCAGATGTTCACCGAGACCTGTAGGAGGCTGAGGATCATGAAGGGTTCCGAAGCAATCGGTCTAGCTCCAAGGGCTGTGGAGAAATGCAAGAACCGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

332

Amino Acids

35.96

Weight (kDa)

8.56

Isoelectric Point (pI)

48.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	54 - 322	2.6e-87	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29080
fragaria_vesca	FvH4_1g05630 FvH4_6g31930
malus_domestica	MD02G1057200.v1.1 MD09G1208000.v1.1 MD15G1191800.v1.1 MD17G1189100.v1.1
prunus_persica	Prupe.3G064200_v2.0.a1 Prupe.7G225600_v2.0.a1
pyrus_communis	pycom02g04630 pycom09g12420 pycom15g17170 pycom17g19740
rosa_chinensis	RchiOBHm_Chr2g0091261 RchiOBHm_Chr2g0139301
rosa_laevigata	RLG00000016198 RLG00000019806
rosa_multiflora	Rmu_sc0002270.1_g000025 Rmu_sc0002525.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105480 Rroxscaffold_2G00150310
rosa_rugosa	Rorug02G0015100 Rorug02G0015200 Rorug02G0356800 Rorug02G0356900
rosa_samantha	Rh2AG060800 Rh2AG406600 Rh2BG059500 Rh2BG417000 Rh2CG061400 Rh2CG392800 Rh2DG060100 Rh2DG426100
rosa_wichuraiana	Rw2G004900 Rw2G032950 Rw2G033210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	630
AccII	CGCG	1 cut(s)	800
AccIII	TCCGGA	1 cut(s)	778
AclWI	GGATC	3 cut(s)	379, 822, 935
AcsI	RAATTY	1 cut(s)	833
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	2 cut(s)	668, 695
AfiI	CCNNNNNNNGG	4 cut(s)	302, 336, 676, 918
AjnI	CCWGG	1 cut(s)	184
AjuI	GAANNNNNNNTTGG	2 cut(s)	256, 288
AluBI	AGCT	7 cut(s)	19, 69, 119, 169, 464, 741, 959
AluI	AGCT	7 cut(s)	19, 69, 119, 169, 464, 741, 959
Alw21I	GWGCWC	2 cut(s)	171, 664
Alw26I	GTCTC	4 cut(s)	35, 155, 229, 902
AlwI	GGATC	3 cut(s)	379, 822, 935
Aor13HI	TCCGGA	1 cut(s)	778
AoxI	GGCC	6 cut(s)	8, 31, 178, 489, 542, 576
ApeKI	GCWGC	5 cut(s)	395, 503, 506, 518, 741
ApoI	RAATTY	1 cut(s)	833
Asp700I	GAANNNNTTC	1 cut(s)	837
AspLEI	GCGC	1 cut(s)	800
AspS9I	GGNCC	3 cut(s)	132, 543, 624
AsuC2I	CCSGG	1 cut(s)	628
AsuHPI	GGTGA	3 cut(s)	739, 893, 895
AvaII	GGWCC	2 cut(s)	132, 624
AxyI	CCTNAGG	2 cut(s)	155, 486
BanI	GGYRCC	1 cut(s)	630
BanII	GRGCYC	1 cut(s)	171
Bbv12I	GWGCWC	2 cut(s)	171, 664
BbvCI	CCTCAGC	3 cut(s)	120, 609, 923
BbvI	GCAGC	5 cut(s)	407, 490, 493, 505, 728
BccI	CCATC	6 cut(s)	329, 466, 534, 650, 782, 805
BciT130I	CCWGG	1 cut(s)	186
BcnI	CCSGG	1 cut(s)	628
BcoDI	GTCTC	4 cut(s)	35, 155, 229, 902
BfaI	CTAG	2 cut(s)	6, 956
BfmI	CTRYAG	1 cut(s)	913
BisI	GCNGC	5 cut(s)	396, 504, 507, 519, 742
BlsI	GCNGC	5 cut(s)	397, 505, 508, 520, 743
Bme1390I	CCNGG	2 cut(s)	186, 628
Bme18I	GGWCC	2 cut(s)	132, 624
BmgT120I	GGNCC	3 cut(s)	132, 543, 624
BmiI	GGNNCC	5 cut(s)	190, 545, 625, 632, 940
BmrFI	CCNGG	2 cut(s)	186, 628
BmsI	GCATC	2 cut(s)	595, 861
BpmI	CTGGAG	2 cut(s)	35, 746
Bpu10I	CCTNAGC	4 cut(s)	120, 170, 609, 923
BpuMI	CCSGG	1 cut(s)	628
BsaHI	GRCGYC	1 cut(s)	327
BsaI	GGTCTC	2 cut(s)	229, 902
BsaJI	CCNNGG	6 cut(s)	360, 522, 573, 717, 890, 962
BsaWI	WCCGGW	2 cut(s)	778, 987
BsaXI	ACNNNNNCTCC	2 cut(s)	719, 749
Bsc4I	CCNNNNNNNGG	4 cut(s)	302, 336, 676, 918
Bse1I	ACTGG	2 cut(s)	18, 872
Bse21I	CCTNAGG	2 cut(s)	155, 486
BseAI	TCCGGA	1 cut(s)	778
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	6 cut(s)	360, 522, 573, 717, 890, 962
BseGI	GGATG	4 cut(s)	545, 661, 865, 876
BseLI	CCNNNNNNNGG	4 cut(s)	302, 336, 676, 918
BseNI	ACTGG	2 cut(s)	18, 872
BseRI	GAGGAG	3 cut(s)	127, 130, 501
BseXI	GCAGC	5 cut(s)	407, 490, 493, 505, 728
Bsh1236I	CGCG	1 cut(s)	800
Bsh1285I	CGRYCG	1 cut(s)	557
BshFI	GGCC	6 cut(s)	10, 33, 180, 491, 544, 578
BshNI	GGYRCC	1 cut(s)	630
BsiEI	CGRYCG	1 cut(s)	557
BsiHKAI	GWGCWC	2 cut(s)	171, 664
BsiSI	CCGG	3 cut(s)	627, 779, 988
BslI	CCNNNNNNNGG	4 cut(s)	302, 336, 676, 918
BsmAI	GTCTC	4 cut(s)	35, 155, 229, 902
BsnI	GGCC	6 cut(s)	10, 33, 180, 491, 544, 578
Bso31I	GGTCTC	2 cut(s)	229, 902
Bsp1286I	GDGCHC	2 cut(s)	171, 664
Bsp13I	TCCGGA	1 cut(s)	778
Bsp143I	GATC	4 cut(s)	371, 554, 814, 927
Bsp19I	CCATGG	3 cut(s)	360, 573, 717
BspANI	GGCC	6 cut(s)	10, 33, 180, 491, 544, 578
BspEI	TCCGGA	1 cut(s)	778
BspFNI	CGCG	1 cut(s)	800
BspHI	TCATGA	1 cut(s)	930
BspLI	GGNNCC	5 cut(s)	190, 545, 625, 632, 940
BspPI	GGATC	3 cut(s)	379, 822, 935
BspT107I	GGYRCC	1 cut(s)	630
BspTNI	GGTCTC	2 cut(s)	229, 902
BsrI	ACTGG	2 cut(s)	18, 872
BssECI	CCNNGG	6 cut(s)	360, 522, 573, 717, 890, 962
BssMI	GATC	4 cut(s)	371, 554, 814, 927
BssNI	GRCGYC	1 cut(s)	327
BssT1I	CCWWGG	6 cut(s)	360, 522, 573, 717, 890, 962
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	216, 827
Bst6I	CTCTTC	1 cut(s)	112
BstACI	GRCGYC	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	501
BstDSI	CCRYGG	3 cut(s)	360, 573, 717
BstENI	CCTNNNNNAGG	3 cut(s)	300, 674, 916
BstF5I	GGATG	4 cut(s)	545, 661, 865, 876
BstFNI	CGCG	1 cut(s)	800
BstHHI	GCGC	1 cut(s)	800
BstKTI	GATC	4 cut(s)	374, 557, 817, 930
BstMAI	GTCTC	4 cut(s)	35, 155, 229, 902
BstMBI	GATC	4 cut(s)	371, 554, 814, 927
BstMCI	CGRYCG	1 cut(s)	557
BstMWI	GCNNNNNNNGC	5 cut(s)	16, 454, 515, 524, 965
BstNI	CCWGG	1 cut(s)	186
BstNSI	RCATGY	1 cut(s)	503
BstSCI	CCNGG	2 cut(s)	184, 626
BstSFI	CTRYAG	1 cut(s)	913
BstUI	CGCG	1 cut(s)	800
BstV1I	GCAGC	5 cut(s)	407, 490, 493, 505, 728
BstX2I	RGATCY	2 cut(s)	371, 814
BstXI	CCANNNNNNTGG	1 cut(s)	724
BstYI	RGATCY	2 cut(s)	371, 814
Bsu36I	CCTNAGG	2 cut(s)	155, 486
BsuRI	GGCC	6 cut(s)	10, 33, 180, 491, 544, 578
BtgI	CCRYGG	3 cut(s)	360, 573, 717
BtsCI	GGATG	4 cut(s)	545, 661, 865, 876
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	3 cut(s)	11, 405, 705
Cac8I	GCNNGC	1 cut(s)	501
CciI	TCATGA	1 cut(s)	930
CfoI	GCGC	1 cut(s)	800
Cfr13I	GGNCC	3 cut(s)	132, 543, 624
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	2 cut(s)	667, 694
CspCI	CAANNNNNGTGG	2 cut(s)	951, 986
CviAII	CATG	6 cut(s)	361, 500, 574, 652, 718, 931
CviQI	GTAC	2 cut(s)	667, 694
DpnI	GATC	4 cut(s)	373, 556, 816, 929
DpnII	GATC	4 cut(s)	371, 554, 814, 927
Eam1104I	CTCTTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	112
Ecl136II	GAGCTC	1 cut(s)	169
Eco130I	CCWWGG	6 cut(s)	360, 522, 573, 717, 890, 962
Eco147I	AGGCCT	2 cut(s)	33, 491
Eco24I	GRGCYC	1 cut(s)	171
Eco31I	GGTCTC	2 cut(s)	229, 902
Eco47I	GGWCC	2 cut(s)	132, 624
Eco53kI	GAGCTC	1 cut(s)	169
Eco81I	CCTNAGG	2 cut(s)	155, 486
EcoICRI	GAGCTC	1 cut(s)	169
EcoNI	CCTNNNNNAGG	3 cut(s)	300, 674, 916
EcoO109I	RGGNCCY	1 cut(s)	132
EcoRII	CCWGG	1 cut(s)	184
EcoT14I	CCWWGG	6 cut(s)	360, 522, 573, 717, 890, 962
EcoT38I	GRGCYC	1 cut(s)	171
ErhI	CCWWGG	6 cut(s)	360, 522, 573, 717, 890, 962
FaeI	CATG	6 cut(s)	364, 503, 577, 655, 721, 934
FaiI	YATR	9 cut(s)	29, 362, 501, 575, 639, 653, 719, 849, 932
FatI	CATG	6 cut(s)	360, 499, 573, 651, 717, 930
Fnu4HI	GCNGC	5 cut(s)	396, 504, 507, 519, 742
FokI	GGATG	4 cut(s)	552, 668, 872, 883
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	5 cut(s)	396, 504, 507, 519, 742
FspBI	CTAG	2 cut(s)	6, 956
GlaI	GCGC	1 cut(s)	799
GluI	GCNGC	5 cut(s)	396, 504, 507, 519, 742
GsuI	CTGGAG	2 cut(s)	35, 746
HaeIII	GGCC	6 cut(s)	10, 33, 180, 491, 544, 578
HapII	CCGG	3 cut(s)	627, 779, 988
HgaI	GACGC	1 cut(s)	335
HhaI	GCGC	1 cut(s)	800
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	6 cut(s)	364, 503, 577, 655, 721, 934
Hin6I	GCGC	1 cut(s)	798
HinP1I	GCGC	1 cut(s)	798
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HinfI	GANTC	2 cut(s)	318, 802
HpaII	CCGG	3 cut(s)	627, 779, 988
HphI	GGTGA	3 cut(s)	739, 893, 895
Hpy166II	GTNNAC	2 cut(s)	682, 903
Hpy188III	TCNNGA	3 cut(s)	725, 779, 931
Hpy8I	GTNNAC	2 cut(s)	682, 903
Hpy99I	CGWCG	2 cut(s)	329, 605
HpyAV	CCTTC	4 cut(s)	112, 191, 637, 928
HpyCH4III	ACNGT	2 cut(s)	216, 827
HpyCH4IV	ACGT	1 cut(s)	692
HpyCH4V	TGCA	1 cut(s)	981
HpyF10VI	GCNNNNNNNGC	5 cut(s)	16, 454, 515, 524, 965
HpySE526I	ACGT	1 cut(s)	692
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	6 cut(s)	364, 503, 577, 655, 721, 934
HspAI	GCGC	1 cut(s)	798
Kpn2I	TCCGGA	1 cut(s)	778
Kzo9I	GATC	4 cut(s)	371, 554, 814, 927
LmnI	GCTCC	5 cut(s)	16, 514, 667, 781, 964
Lsp1109I	GCAGC	5 cut(s)	407, 490, 493, 505, 728
LweI	GCATC	2 cut(s)	595, 861
MaeI	CTAG	2 cut(s)	6, 956
MaeII	ACGT	1 cut(s)	692
MalI	GATC	4 cut(s)	373, 556, 816, 929
MboI	GATC	4 cut(s)	371, 554, 814, 927
MflI	RGATCY	2 cut(s)	371, 814
MhlI	GDGCHC	2 cut(s)	171, 664
MluCI	AATT	4 cut(s)	228, 549, 583, 833
MlyI	GAGTC	1 cut(s)	811
MmeI	TCCRAC	2 cut(s)	348, 450
MroI	TCCGGA	1 cut(s)	778
MroXI	GAANNNNTTC	1 cut(s)	837
MseI	TTAA	1 cut(s)	687
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	3 cut(s)	627, 779, 988
MspR9I	CCNGG	2 cut(s)	186, 628
MvaI	CCWGG	1 cut(s)	186
MvnI	CGCG	1 cut(s)	800
MwoI	GCNNNNNNNGC	5 cut(s)	16, 454, 515, 524, 965
NciI	CCSGG	1 cut(s)	628
NcoI	CCATGG	3 cut(s)	360, 573, 717
NdeII	GATC	4 cut(s)	371, 554, 814, 927
NlaIII	CATG	6 cut(s)	364, 503, 577, 655, 721, 934
NlaIV	GGNNCC	5 cut(s)	190, 545, 625, 632, 940
NmeAIII	GCCGAG	1 cut(s)	156
NspI	RCATGY	1 cut(s)	503
PaeI	GCATGC	1 cut(s)	503
PagI	TCATGA	1 cut(s)	930
PceI	AGGCCT	2 cut(s)	33, 491
PdmI	GAANNNNTTC	1 cut(s)	837
PfeI	GAWTC	1 cut(s)	318
PkrI	GCNGC	5 cut(s)	397, 505, 508, 520, 743
Ple19I	CGATCG	1 cut(s)	557
PleI	GAGTC	1 cut(s)	810
PpsI	GAGTC	1 cut(s)	810
PpuMI	RGGWCCY	1 cut(s)	132
Psp124BI	GAGCTC	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	5 cut(s)	190, 545, 625, 632, 940
PspPI	GGNCC	3 cut(s)	132, 543, 624
PspPPI	RGGWCCY	1 cut(s)	132
PsuI	RGATCY	2 cut(s)	371, 814
PvuI	CGATCG	1 cut(s)	557
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	2 cut(s)	668, 695
RsaNI	GTAC	2 cut(s)	667, 694
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	687
SatI	GCNGC	5 cut(s)	396, 504, 507, 519, 742
Sau3AI	GATC	4 cut(s)	371, 554, 814, 927
Sau96I	GGNCC	3 cut(s)	132, 543, 624
SchI	GAGTC	1 cut(s)	811
ScrFI	CCNGG	2 cut(s)	186, 628
SduI	GDGCHC	2 cut(s)	171, 664
SfaNI	GCATC	2 cut(s)	595, 861
SfcI	CTRYAG	1 cut(s)	913
SinI	GGWCC	2 cut(s)	132, 624
SphI	GCATGC	1 cut(s)	503
Sse9I	AATT	4 cut(s)	228, 549, 583, 833
SseBI	AGGCCT	2 cut(s)	33, 491
SspMI	CTAG	2 cut(s)	6, 956
SstI	GAGCTC	1 cut(s)	171
StuI	AGGCCT	2 cut(s)	33, 491
StyD4I	CCNGG	2 cut(s)	184, 626
StyI	CCWWGG	6 cut(s)	360, 522, 573, 717, 890, 962
TaaI	ACNGT	2 cut(s)	216, 827
TaiI	ACGT	1 cut(s)	695
TaqI	TCGA	1 cut(s)	553
TaqII	GACCGA	1 cut(s)	941
TasI	AATT	4 cut(s)	228, 549, 583, 833
TfiI	GAWTC	1 cut(s)	318
Tru1I	TTAA	1 cut(s)	687
Tru9I	TTAA	1 cut(s)	687
TscAI	CASTG	3 cut(s)	18, 405, 712
TseI	GCWGC	5 cut(s)	395, 503, 506, 518, 741
TspDTI	ATGAA	3 cut(s)	36, 72, 947
TspGWI	ACGGA	1 cut(s)	654
TspRI	CASTG	3 cut(s)	18, 405, 712
VpaK11BI	GGWCC	2 cut(s)	132, 624
XagI	CCTNNNNNAGG	3 cut(s)	300, 674, 916
XapI	RAATTY	1 cut(s)	833
XceI	RCATGY	1 cut(s)	503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XmnI	GAANNNNTTC	1 cut(s)	837
XspI	CTAG	2 cut(s)	6, 956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.