Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003380

Physical Location & Seq

Genomic Coordinates Forward (+)

3022035 .. 3022379

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g04630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTCTATATCTTTGGAGCATGATTACATAGGCTTATCTCCTTCAATGGAAACCTCTACCAAGTCTGCTGCTTTGAACCTCAAAGCCACTGAGCTGAGGCTGGGTTTGCCTGGCTCTCGGTCTCCGGAGAGAGACAGCGGCGGCGGCGGTGGTGGTGGGGTTGAGGAGAAGGCTGCTGGGTTTTCAGTCTGTGGGGTTAAGGGGTTGGTGTCTGGGGCCAAGAGGGGCTTCTCAGACGCCATTGATGGAGCTTCTGGAAAGTGGGTTTTCTCTGGGCCATCAAAAGTGATGGATCTGCGGTGGAGTTGGGCAAAGGTGGAAACTTGCTCTCTCCCAGAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

115

Amino Acids

11.75

Weight (kDa)

6.57

Isoelectric Point (pI)

51.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29080
fragaria_vesca	FvH4_1g05630 FvH4_6g31930
malus_domestica	MD02G1057200.v1.1 MD09G1208000.v1.1 MD15G1191800.v1.1 MD17G1189100.v1.1
prunus_persica	Prupe.3G064200_v2.0.a1 Prupe.7G225600_v2.0.a1
pyrus_communis	pycom02g04630 pycom09g12420 pycom15g17170 pycom17g19740
rosa_chinensis	RchiOBHm_Chr2g0091261 RchiOBHm_Chr2g0139301
rosa_laevigata	RLG00000016198 RLG00000019806
rosa_multiflora	Rmu_sc0002270.1_g000025 Rmu_sc0002525.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105480 Rroxscaffold_2G00150310
rosa_rugosa	Rorug02G0015100 Rorug02G0015200 Rorug02G0356800 Rorug02G0356900
rosa_samantha	Rh2AG060800 Rh2AG406600 Rh2BG059500 Rh2BG417000 Rh2CG061400 Rh2CG392800 Rh2DG060100 Rh2DG426100
rosa_wichuraiana	Rw2G004900 Rw2G032950 Rw2G033210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	5 cut(s)	138, 141, 144, 147, 298
AclWI	GGATC	1 cut(s)	300
AcyI	GRCGYC	1 cut(s)	237
AgsI	TTSAA	2 cut(s)	45, 76
AjnI	CCWGG	1 cut(s)	109
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	2 cut(s)	94, 251
AluI	AGCT	2 cut(s)	94, 251
Alw26I	GTCTC	2 cut(s)	126, 126
AlwI	GGATC	1 cut(s)	300
Aor13HI	TCCGGA	1 cut(s)	124
AoxI	GGCC	2 cut(s)	216, 275
ApeKI	GCWGC	2 cut(s)	68, 173
AspS9I	GGNCC	2 cut(s)	216, 275
BbvCI	CCTCAGC	1 cut(s)	95
BbvI	GCAGC	2 cut(s)	55, 160
BccI	CCATC	3 cut(s)	239, 283, 286
BciT130I	CCWGG	1 cut(s)	111
BcoDI	GTCTC	2 cut(s)	126, 126
BisI	GCNGC	5 cut(s)	69, 139, 142, 145, 174
BlsI	GCNGC	5 cut(s)	70, 140, 143, 146, 175
Bme1390I	CCNGG	1 cut(s)	111
BmgT120I	GGNCC	2 cut(s)	216, 275
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	111
Bpu10I	CCTNAGC	1 cut(s)	95
BsaHI	GRCGYC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	124
BseAI	TCCGGA	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	111
BseMII	CTCAG	3 cut(s)	81, 86, 246
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	2 cut(s)	55, 160
BseYI	CCCAGC	2 cut(s)	100, 176
BshFI	GGCC	2 cut(s)	218, 277
BsiSI	CCGG	1 cut(s)	125
BsmAI	GTCTC	2 cut(s)	126, 126
BsnI	GGCC	2 cut(s)	218, 277
Bso31I	GGTCTC	1 cut(s)	126
Bsp13I	TCCGGA	1 cut(s)	124
Bsp143I	GATC	1 cut(s)	292
BspACI	CCGC	5 cut(s)	138, 141, 144, 147, 298
BspANI	GGCC	2 cut(s)	218, 277
BspCNI	CTCAG	3 cut(s)	82, 87, 245
BspEI	TCCGGA	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	217
BspPI	GGATC	1 cut(s)	300
BspTNI	GGTCTC	1 cut(s)	126
BssMI	GATC	1 cut(s)	292
BssNI	GRCGYC	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	111
BstACI	GRCGYC	1 cut(s)	237
BstDEI	CTNAG	3 cut(s)	90, 95, 232
BstKTI	GATC	1 cut(s)	295
BstMAI	GTCTC	2 cut(s)	126, 126
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 144
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	109
BstV1I	GCAGC	2 cut(s)	55, 160
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuRI	GGCC	2 cut(s)	218, 277
BtsIMutI	CAGTG	1 cut(s)	87
Cfr13I	GGNCC	2 cut(s)	216, 275
CseI	GACGC	1 cut(s)	245
CviAII	CATG	1 cut(s)	20
DdeI	CTNAG	3 cut(s)	90, 95, 232
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	109
FaeI	CATG	1 cut(s)	23
FaiI	YATR	3 cut(s)	8, 21, 29
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FatI	CATG	1 cut(s)	19
Fnu4HI	GCNGC	5 cut(s)	69, 139, 142, 145, 174
Fsp4HI	GCNGC	5 cut(s)	69, 139, 142, 145, 174
GluI	GCNGC	5 cut(s)	69, 139, 142, 145, 174
GsaI	CCCAGC	2 cut(s)	104, 180
HaeIII	GGCC	2 cut(s)	218, 277
HapII	CCGG	1 cut(s)	125
HgaI	GACGC	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	1 cut(s)	23
HpaII	CCGG	1 cut(s)	125
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	2 cut(s)	125, 255
HpyAV	CCTTC	2 cut(s)	51, 163
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 144
HpyF3I	CTNAG	3 cut(s)	90, 95, 232
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	1 cut(s)	23
Kpn2I	TCCGGA	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	292
LmnI	GCTCC	2 cut(s)	16, 248
LpnPI	CCDG	8 cut(s)	86, 96, 123, 138, 162, 198, 240, 258
Lsp1109I	GCAGC	2 cut(s)	55, 160
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MflI	RGATCY	1 cut(s)	292
MnlI	CCTC	6 cut(s)	64, 89, 90, 157, 216, 331
MroI	TCCGGA	1 cut(s)	124
MseI	TTAA	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	138
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	106, 144
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	1 cut(s)	217
PkrI	GCNGC	5 cut(s)	70, 140, 143, 146, 175
Psp6I	CCWGG	1 cut(s)	109
PspFI	CCCAGC	2 cut(s)	100, 176
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	2 cut(s)	216, 275
PsuI	RGATCY	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	5 cut(s)	69, 139, 142, 145, 174
Sau3AI	GATC	1 cut(s)	292
Sau96I	GGNCC	2 cut(s)	216, 275
ScrFI	CCNGG	1 cut(s)	111
SetI	ASST	6 cut(s)	56, 81, 96, 253, 318, 342
SsiI	CCGC	5 cut(s)	138, 141, 144, 147, 298
StyD4I	CCNGG	1 cut(s)	109
TaqII	GACCGA	1 cut(s)	108
TauI	GCSGC	3 cut(s)	141, 144, 147
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	2 cut(s)	68, 173
TspRI	CASTG	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.