Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003380

Physical Location & Seq

Genomic Coordinates Reverse (-)

4610314 .. 4613168

Gene Structure 2855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G004900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTCTATGTCCTTGGAGCATGATTACATAGGCTTATCTGAGTCTGTTCCTTCAATGGAAGCCTCTGACAGGTCTAACAAGGGAGCTGCTTTGAACCTCAAAGCCACTGAGCTCAGGCTGGGCTTGCCTGGGTCTGAGTCCCCAGAGAGAGATAGTGGTGGTGTGGAGGACAAAACTGGGTTTTCACTGCCTAGGGTGTTCTCTGACGCCATTGATGGAGCTTCTGGGAAGTGGGTTTTCTCTGGGAGTGGTGGATCTGAGGCTGATTTGGGTAAAGGTGGTAACTTGGTTTCTCCTAGAGGTGTTAATGGTGGAAAAGGTCTTGCTGGGCCTGAGTGTAAAAGTCAACCAATCTCTGCAGTGAAAGATGGGGTACAACAGTCCCCAAACCCTTTGCATGAGAAGAAGCCTCAGGTTTCTGCTCCTGCAGCAAAGGCACAGGTTGTTGGATGGCCACCAATTCGTTCATTCCGGAAGAATTCAATGGCATCCATTCCTCCCAAAAAGGATGATGATGCAGAAGGCAAGATCGGAGCAGGGTGTCTTTATATCAAGGTCAGCATGGATGGTGCACCATACCTGAGGAAAGTCGATCTCAAAACCTATGGTAGCTATGTGGATCTATCATTAGCACTGGAGAAGATGTTCAGCTGCTTTACAATTGGTCAATGTGGCCCACATGGAGTTTCAAGTCAAGATGGAATGAGCGAGAGTCGTTTAATGGATCTCCTCCATGGTGCTGAATACGTCCTCACTTATGAAGACAAGGATCATGACTGGATGCTAGTTGGTGACGTTCCCTGGCAGATGTTCACTGACTCGTGTAGAAGGATGAGGATTATGAAGAGTTCAGACGCTATAGGGCTAGCCCCAAGAGCCATGCAGAAGTGCAAAAATAGTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

301

Amino Acids

32.18

Weight (kDa)

6.53

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	35 - 292	5.7e-85	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29080
fragaria_vesca	FvH4_1g05630 FvH4_6g31930
malus_domestica	MD02G1057200.v1.1 MD09G1208000.v1.1 MD15G1191800.v1.1 MD17G1189100.v1.1
prunus_persica	Prupe.3G064200_v2.0.a1 Prupe.7G225600_v2.0.a1
pyrus_communis	pycom02g04630 pycom09g12420 pycom15g17170 pycom17g19740
rosa_chinensis	RchiOBHm_Chr2g0091261 RchiOBHm_Chr2g0139301
rosa_laevigata	RLG00000016198 RLG00000019806
rosa_multiflora	Rmu_sc0002270.1_g000025 Rmu_sc0002525.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105480 Rroxscaffold_2G00150310
rosa_rugosa	Rorug02G0015100 Rorug02G0015200 Rorug02G0356800 Rorug02G0356900
rosa_samantha	Rh2AG060800 Rh2AG406600 Rh2BG059500 Rh2BG417000 Rh2CG061400 Rh2CG392800 Rh2DG060100 Rh2DG426100
rosa_wichuraiana	Rw2G004900 Rw2G032950 Rw2G033210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	471
AclWI	GGATC	4 cut(s)	262, 627, 732, 777
AcoI	YGGCCR	1 cut(s)	452
AcsI	RAATTY	1 cut(s)	478
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	1 cut(s)	375
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgsI	TTSAA	4 cut(s)	54, 94, 483, 690
AjnI	CCWGG	2 cut(s)	127, 800
AloI	GAACNNNNNNTCC	2 cut(s)	629, 661
AluBI	AGCT	5 cut(s)	86, 112, 221, 612, 651
AluI	AGCT	5 cut(s)	86, 112, 221, 612, 651
Alw21I	GWGCWC	2 cut(s)	114, 574
Alw44I	GTGCAC	1 cut(s)	570
AlwI	GGATC	4 cut(s)	262, 627, 732, 777
Aor13HI	TCCGGA	1 cut(s)	471
AoxI	GGCC	3 cut(s)	329, 452, 673
ApaLI	GTGCAC	1 cut(s)	570
ApeKI	GCWGC	3 cut(s)	86, 428, 651
ApoI	RAATTY	1 cut(s)	478
Asp700I	GAANNNNTTC	1 cut(s)	644
AspA2I	CCTAGG	1 cut(s)	191
AspS9I	GGNCC	2 cut(s)	329, 674
AsuHPI	GGTGA	1 cut(s)	803
AsuNHI	GCTAGC	1 cut(s)	865
AvrII	CCTAGG	1 cut(s)	191
AxyI	CCTNAGG	2 cut(s)	411, 581
BaeGI	GKGCMC	1 cut(s)	574
BaeI	ACNNNNGTAYC	2 cut(s)	365, 398
BalI	TGGCCA	1 cut(s)	454
BanII	GRGCYC	1 cut(s)	114
BauI	CACGAG	1 cut(s)	820
BbsI	GAAGAC	1 cut(s)	768
Bbv12I	GWGCWC	2 cut(s)	114, 574
BbvI	GCAGC	3 cut(s)	73, 440, 638
BccI	CCATC	5 cut(s)	209, 362, 444, 560, 692
BciT130I	CCWGG	2 cut(s)	129, 802
BfaI	CTAG	4 cut(s)	192, 297, 785, 866
BfmI	CTRYAG	3 cut(s)	357, 426, 858
BisI	GCNGC	3 cut(s)	87, 429, 652
BlnI	CCTAGG	1 cut(s)	191
BlsI	GCNGC	3 cut(s)	88, 430, 653
Bme1390I	CCNGG	2 cut(s)	129, 802
BmgT120I	GGNCC	2 cut(s)	329, 674
BmrFI	CCNGG	2 cut(s)	129, 802
BmrI	ACTGGG	1 cut(s)	186
BmsI	GCATC	3 cut(s)	497, 505, 771
BmtI	GCTAGC	1 cut(s)	869
BmuI	ACTGGG	1 cut(s)	186
BpiI	GAAGAC	1 cut(s)	768
BpmI	CTGGAG	1 cut(s)	656
Bpu10I	CCTNAGC	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	5 cut(s)	12, 128, 191, 733, 800
BsaWI	WCCGGW	1 cut(s)	471
BsaXI	ACNNNNNCTCC	2 cut(s)	629, 659
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse1I	ACTGG	3 cut(s)	181, 639, 782
Bse21I	CCTNAGG	2 cut(s)	411, 581
BseAI	TCCGGA	1 cut(s)	471
BseBI	CCWGG	2 cut(s)	129, 802
BseDI	CCNNGG	5 cut(s)	12, 128, 191, 733, 800
BseGI	GGATG	6 cut(s)	455, 488, 514, 571, 786, 837
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMII	CTCAG	8 cut(s)	30, 99, 126, 127, 249, 324, 425, 572
BseNI	ACTGG	3 cut(s)	181, 639, 782
BseRI	GAGGAG	1 cut(s)	719
BseSI	GKGCMC	1 cut(s)	574
BseXI	GCAGC	3 cut(s)	73, 440, 638
BseYI	CCCAGC	2 cut(s)	118, 326
BshFI	GGCC	3 cut(s)	331, 454, 675
BsiHKAI	GWGCWC	2 cut(s)	114, 574
BsiSI	CCGG	1 cut(s)	472
BslFI	GGGAC	2 cut(s)	124, 367
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmFI	GGGAC	2 cut(s)	124, 367
BsnI	GGCC	3 cut(s)	331, 454, 675
Bsp1286I	GDGCHC	2 cut(s)	114, 574
Bsp13I	TCCGGA	1 cut(s)	471
Bsp143I	GATC	6 cut(s)	254, 528, 592, 619, 724, 769
Bsp19I	CCATGG	1 cut(s)	733
BspANI	GGCC	3 cut(s)	331, 454, 675
BspCNI	CTCAG	8 cut(s)	31, 100, 126, 127, 250, 325, 424, 573
BspEI	TCCGGA	1 cut(s)	471
BspHI	TCATGA	1 cut(s)	772
BspMAI	CTGCAG	2 cut(s)	361, 430
BspOI	GCTAGC	1 cut(s)	869
BspPI	GGATC	4 cut(s)	262, 627, 732, 777
BsrI	ACTGG	3 cut(s)	181, 639, 782
BssECI	CCNNGG	5 cut(s)	12, 128, 191, 733, 800
BssMI	GATC	6 cut(s)	254, 528, 592, 619, 724, 769
BssNI	GRCGYC	1 cut(s)	207
BssSI	CACGAG	1 cut(s)	820
BssT1I	CCWWGG	3 cut(s)	12, 191, 733
Bst2BI	CACGAG	1 cut(s)	820
Bst2UI	CCWGG	2 cut(s)	129, 802
Bst4CI	ACNGT	1 cut(s)	381
Bst6I	CTCTTC	1 cut(s)	839
BstACI	GRCGYC	1 cut(s)	207
BstC8I	GCNNGC	2 cut(s)	125, 867
BstDEI	CTNAG	8 cut(s)	39, 108, 113, 135, 258, 333, 411, 581
BstDSI	CCRYGG	1 cut(s)	733
BstENI	CCTNNNNNAGG	1 cut(s)	67
BstF5I	GGATG	6 cut(s)	455, 488, 514, 571, 786, 837
BstKTI	GATC	6 cut(s)	257, 531, 595, 622, 727, 772
BstMBI	GATC	6 cut(s)	254, 528, 592, 619, 724, 769
BstMWI	GCNNNNNNNGC	4 cut(s)	124, 428, 434, 875
BstNI	CCWGG	2 cut(s)	129, 802
BstSCI	CCNGG	2 cut(s)	127, 800
BstSFI	CTRYAG	3 cut(s)	357, 426, 858
BstSLI	GKGCMC	1 cut(s)	574
BstV1I	GCAGC	3 cut(s)	73, 440, 638
BstV2I	GAAGAC	1 cut(s)	768
BstX2I	RGATCY	3 cut(s)	254, 619, 724
BstYI	RGATCY	3 cut(s)	254, 619, 724
Bsu36I	CCTNAGG	2 cut(s)	411, 581
BsuRI	GGCC	3 cut(s)	331, 454, 675
BtgI	CCRYGG	1 cut(s)	733
BtsCI	GGATG	6 cut(s)	455, 488, 514, 571, 786, 837
BtsI	GCAGTG	2 cut(s)	185, 366
BtsIMutI	CAGTG	5 cut(s)	105, 185, 366, 632, 813
Cac8I	GCNNGC	2 cut(s)	125, 867
CciI	TCATGA	1 cut(s)	772
Cfr13I	GGNCC	2 cut(s)	329, 674
CseI	GACGC	2 cut(s)	215, 863
Csp6I	GTAC	1 cut(s)	374
CviAII	CATG	7 cut(s)	20, 398, 562, 680, 734, 773, 880
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	8 cut(s)	39, 108, 113, 135, 258, 333, 411, 581
DpnI	GATC	6 cut(s)	256, 530, 594, 621, 726, 771
DpnII	GATC	6 cut(s)	254, 528, 592, 619, 724, 769
EaeI	YGGCCR	1 cut(s)	452
Eam1104I	CTCTTC	1 cut(s)	839
EarI	CTCTTC	1 cut(s)	839
Ecl136II	GAGCTC	1 cut(s)	112
Eco130I	CCWWGG	3 cut(s)	12, 191, 733
Eco24I	GRGCYC	1 cut(s)	114
Eco53kI	GAGCTC	1 cut(s)	112
Eco81I	CCTNAGG	2 cut(s)	411, 581
EcoICRI	GAGCTC	1 cut(s)	112
EcoNI	CCTNNNNNAGG	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	478
EcoRII	CCWGG	2 cut(s)	127, 800
EcoT14I	CCWWGG	3 cut(s)	12, 191, 733
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	3 cut(s)	12, 191, 733
FaeI	CATG	7 cut(s)	23, 401, 565, 683, 737, 776, 883
FaqI	GGGAC	2 cut(s)	124, 367
FatI	CATG	7 cut(s)	19, 397, 561, 679, 733, 772, 879
Fnu4HI	GCNGC	3 cut(s)	87, 429, 652
FokI	GGATG	6 cut(s)	462, 475, 521, 578, 793, 844
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	3 cut(s)	87, 429, 652
FspBI	CTAG	4 cut(s)	192, 297, 785, 866
GluI	GCNGC	3 cut(s)	87, 429, 652
GsaI	CCCAGC	2 cut(s)	122, 330
GsuI	CTGGAG	1 cut(s)	656
HaeIII	GGCC	3 cut(s)	331, 454, 675
HapII	CCGG	1 cut(s)	472
HgaI	GACGC	2 cut(s)	215, 863
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	7 cut(s)	23, 401, 565, 683, 737, 776, 883
HincII	GTYRAC	1 cut(s)	347
HindII	GTYRAC	1 cut(s)	347
HinfI	GANTC	4 cut(s)	41, 137, 712, 818
HpaII	CCGG	1 cut(s)	472
HphI	GGTGA	1 cut(s)	803
Hpy166II	GTNNAC	3 cut(s)	347, 572, 813
Hpy188I	TCNGA	7 cut(s)	40, 67, 136, 205, 259, 533, 853
Hpy188III	TCNNGA	3 cut(s)	472, 695, 773
Hpy8I	GTNNAC	3 cut(s)	347, 572, 813
HpyAV	CCTTC	3 cut(s)	60, 515, 822
HpyCH4III	ACNGT	1 cut(s)	381
HpyCH4IV	ACGT	2 cut(s)	747, 795
HpyCH4V	TGCA	7 cut(s)	359, 397, 428, 518, 572, 883, 891
HpyF10VI	GCNNNNNNNGC	4 cut(s)	124, 428, 434, 875
HpyF3I	CTNAG	8 cut(s)	39, 108, 113, 135, 258, 333, 411, 581
HpySE526I	ACGT	2 cut(s)	747, 795
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	7 cut(s)	23, 401, 565, 683, 737, 776, 883
Kpn2I	TCCGGA	1 cut(s)	471
Kzo9I	GATC	6 cut(s)	254, 528, 592, 619, 724, 769
LmnI	GCTCC	5 cut(s)	16, 83, 218, 427, 533
Lsp1109I	GCAGC	3 cut(s)	73, 440, 638
LweI	GCATC	3 cut(s)	497, 505, 771
MaeI	CTAG	4 cut(s)	192, 297, 785, 866
MaeII	ACGT	2 cut(s)	747, 795
MaeIII	GTNAC	2 cut(s)	281, 791
MalI	GATC	6 cut(s)	256, 530, 594, 621, 726, 771
MboI	GATC	6 cut(s)	254, 528, 592, 619, 724, 769
MboII	GAAGA	5 cut(s)	415, 487, 652, 773, 856
MfeI	CAATTG	1 cut(s)	660
MflI	RGATCY	3 cut(s)	254, 619, 724
MhlI	GDGCHC	2 cut(s)	114, 574
MlsI	TGGCCA	1 cut(s)	454
MluCI	AATT	4 cut(s)	459, 478, 660, 901
MluNI	TGGCCA	1 cut(s)	454
MlyI	GAGTC	4 cut(s)	50, 146, 721, 812
MmeI	TCCRAC	1 cut(s)	427
Mox20I	TGGCCA	1 cut(s)	454
MroI	TCCGGA	1 cut(s)	471
MroXI	GAANNNNTTC	1 cut(s)	644
MscI	TGGCCA	1 cut(s)	454
MseI	TTAA	2 cut(s)	306, 719
Msp20I	TGGCCA	1 cut(s)	454
MspA1I	CMGCKG	1 cut(s)	651
MspI	CCGG	1 cut(s)	472
MspR9I	CCNGG	2 cut(s)	129, 802
MunI	CAATTG	1 cut(s)	660
MvaI	CCWGG	2 cut(s)	129, 802
MwoI	GCNNNNNNNGC	4 cut(s)	124, 428, 434, 875
NcoI	CCATGG	1 cut(s)	733
NdeII	GATC	6 cut(s)	254, 528, 592, 619, 724, 769
NheI	GCTAGC	1 cut(s)	865
NlaIII	CATG	7 cut(s)	23, 401, 565, 683, 737, 776, 883
NmuCI	GTSAC	1 cut(s)	791
PagI	TCATGA	1 cut(s)	772
PdmI	GAANNNNTTC	1 cut(s)	644
PkrI	GCNGC	3 cut(s)	88, 430, 653
PleI	GAGTC	4 cut(s)	49, 145, 720, 812
PpsI	GAGTC	4 cut(s)	49, 145, 720, 812
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	2 cut(s)	127, 800
PspFI	CCCAGC	2 cut(s)	118, 326
PspGI	CCWGG	2 cut(s)	127, 800
PspPI	GGNCC	2 cut(s)	329, 674
PstI	CTGCAG	2 cut(s)	361, 430
PsuI	RGATCY	3 cut(s)	254, 619, 724
PvuII	CAGCTG	1 cut(s)	651
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
SacI	GAGCTC	1 cut(s)	114
SaqAI	TTAA	2 cut(s)	306, 719
SatI	GCNGC	3 cut(s)	87, 429, 652
Sau3AI	GATC	6 cut(s)	254, 528, 592, 619, 724, 769
Sau96I	GGNCC	2 cut(s)	329, 674
SchI	GAGTC	4 cut(s)	50, 146, 721, 812
ScrFI	CCNGG	2 cut(s)	129, 802
SduI	GDGCHC	2 cut(s)	114, 574
SfaNI	GCATC	3 cut(s)	497, 505, 771
SfcI	CTRYAG	3 cut(s)	357, 426, 858
Sse9I	AATT	4 cut(s)	459, 478, 660, 901
SspMI	CTAG	4 cut(s)	192, 297, 785, 866
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	127, 800
StyI	CCWWGG	3 cut(s)	12, 191, 733
TaaI	ACNGT	1 cut(s)	381
TaiI	ACGT	2 cut(s)	750, 798
TaqI	TCGA	1 cut(s)	591
TasI	AATT	4 cut(s)	459, 478, 660, 901
Tru1I	TTAA	2 cut(s)	306, 719
Tru9I	TTAA	2 cut(s)	306, 719
TscAI	CASTG	5 cut(s)	112, 192, 366, 639, 820
TseFI	GTSAC	1 cut(s)	791
TseI	GCWGC	3 cut(s)	86, 428, 651
Tsp45I	GTSAC	1 cut(s)	791
TspDTI	ATGAA	3 cut(s)	456, 774, 857
TspRI	CASTG	5 cut(s)	112, 192, 366, 639, 820
VneI	GTGCAC	1 cut(s)	570
XagI	CCTNNNNNAGG	1 cut(s)	67
XapI	RAATTY	1 cut(s)	478
XmaJI	CCTAGG	1 cut(s)	191
XmnI	GAANNNNTTC	1 cut(s)	644
XspI	CTAG	4 cut(s)	192, 297, 785, 866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.