Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002525.1

Orthogroup ID

OG0003380

Physical Location & Seq

Genomic Coordinates Forward (+)

52839 .. 55100

Gene Structure 2262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002525.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

atgtctgtaccactggaacatgactacataggcttagcagagacttcttcaatggaaagaagctctgataggatttcctcttcctcctcctctgcccactcaactacagaggatgtcaagacctctgctttcaacctcaaggagactgagctgaggcttggcttgcctggctctcactctcctgagagaaaaccaggaattgctctttcaatttttcgcaaagatttggaggacaataagcaaaatggatatcctctaaacccttcaaaaaccaaccctgtgtctggtgctaagaggggtttctctgatgccattgatgggtcttctgagaaatgggtttttcgtatgagtaatggatctgaagctgataaaggagcagtcttgttctctcctaaaggtgagagtaatgctaaaacacaacagctatgtgtgtctggacaaaccaagaaagaggttgctgcttctgttgttcctcagtcaccaaagccagtccaagagaagcagaagtctcaggtctctgagcatgttagtcctcctgctgccaaggcacaggtggtaggatggcccccaattcgatcatttcgaaagaacaccatggcctcaaatttggcaaagaacactgatgatgctgagggaaaacaagggtctgggtgtctttatgtgaaggttagcatggatggtgctccatatctaaggaaggttgaccttaaaatgtacaacaactacatggaactctctatggctttggagaagatgttcagctgcttcaccattgggcagtgcagttctaatggatttccagagaaggatggcctgagtgagagtcggttgatggatcttctccatggttctgaatacgttcttacttttgaagacaaggacgatgactggatgcttgttggtgatgttccttgggggatgttcactgagacgtgtaggaaactaaggatcatgaaaggttcagaagcaattggacttgctccaagggctatggagaagtgcaagaaccgcaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

338

Amino Acids

37.08

Weight (kDa)

8.09

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29080
fragaria_vesca	FvH4_1g05630 FvH4_6g31930
malus_domestica	MD02G1057200.v1.1 MD09G1208000.v1.1 MD15G1191800.v1.1 MD17G1189100.v1.1
prunus_persica	Prupe.3G064200_v2.0.a1 Prupe.7G225600_v2.0.a1
pyrus_communis	pycom02g04630 pycom09g12420 pycom15g17170 pycom17g19740
rosa_chinensis	RchiOBHm_Chr2g0091261 RchiOBHm_Chr2g0139301
rosa_laevigata	RLG00000016198 RLG00000019806
rosa_multiflora	Rmu_sc0002270.1_g000025 Rmu_sc0002525.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105480 Rroxscaffold_2G00150310
rosa_rugosa	Rorug02G0015100 Rorug02G0015200 Rorug02G0356800 Rorug02G0356900
rosa_samantha	Rh2AG060800 Rh2AG406600 Rh2BG059500 Rh2BG417000 Rh2CG061400 Rh2CG392800 Rh2DG060100 Rh2DG426100
rosa_wichuraiana	Rw2G004900 Rw2G032950 Rw2G033210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	1009
AclWI	GGATC	3 cut(s)	364, 843, 956
AcsI	RAATTY	1 cut(s)	604
AcuI	CTGAAG	1 cut(s)	381
AfaI	GTAC	2 cut(s)	9, 716
AfiI	CCNNNNNNNGG	2 cut(s)	284, 318
AflIII	ACRYGT	1 cut(s)	932
AgsI	TTSAA	5 cut(s)	51, 133, 210, 267, 872
AjiI	CACGTC	1 cut(s)	933
AjnI	CCWGG	2 cut(s)	166, 193
AloI	GAACNNNNNNTCC	2 cut(s)	740, 772
AluBI	AGCT	5 cut(s)	63, 151, 365, 424, 762
AluI	AGCT	5 cut(s)	63, 151, 365, 424, 762
Alw21I	GWGCWC	1 cut(s)	685
Alw26I	GTCTC	5 cut(s)	35, 137, 513, 520, 923
AlwI	GGATC	3 cut(s)	364, 843, 956
AoxI	GGCC	3 cut(s)	563, 597, 811
ApeKI	GCWGC	3 cut(s)	458, 539, 762
ApoI	RAATTY	1 cut(s)	604
Asp700I	GAANNNNTTC	2 cut(s)	755, 858
AspS9I	GGNCC	1 cut(s)	564
AsuHPI	GGTGA	4 cut(s)	410, 471, 760, 914
AsuII	TTCGAA	1 cut(s)	583
BbsI	GAAGAC	2 cut(s)	315, 879
Bbv12I	GWGCWC	1 cut(s)	685
BbvCI	CCTCAGC	2 cut(s)	152, 630
BbvI	GCAGC	3 cut(s)	445, 526, 749
BccI	CCATC	5 cut(s)	311, 555, 671, 803, 826
BciT130I	CCWGG	2 cut(s)	168, 195
BcoDI	GTCTC	5 cut(s)	35, 137, 513, 520, 923
BfaI	CTAG	1 cut(s)	1015
BfmI	CTRYAG	1 cut(s)	105
BisI	GCNGC	3 cut(s)	459, 540, 763
BlpI	GCTNAGC	1 cut(s)	34
BlsI	GCNGC	3 cut(s)	460, 541, 764
Bme1390I	CCNGG	2 cut(s)	168, 195
BmgBI	CACGTC	1 cut(s)	933
BmgT120I	GGNCC	1 cut(s)	564
BmiI	GGNNCC	1 cut(s)	566
BmrFI	CCNGG	2 cut(s)	168, 195
BmsI	GCATC	3 cut(s)	298, 616, 882
BpiI	GAAGAC	2 cut(s)	315, 879
Bpu10I	CCTNAGC	2 cut(s)	152, 630
Bpu1102I	GCTNAGC	1 cut(s)	34
Bpu14I	TTCGAA	1 cut(s)	583
BpuEI	CTTGAG	1 cut(s)	122
BsaI	GGTCTC	1 cut(s)	520
BsaJI	CCNNGG	5 cut(s)	543, 594, 844, 911, 983
BsaXI	ACNNNNNCTCC	2 cut(s)	740, 770
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 318
Bse1I	ACTGG	3 cut(s)	18, 488, 893
BseBI	CCWGG	2 cut(s)	168, 195
BseDI	CCNNGG	5 cut(s)	543, 594, 844, 911, 983
BseGI	GGATG	6 cut(s)	118, 566, 682, 814, 897, 924
BseLI	CCNNNNNNNGG	2 cut(s)	284, 318
BseNI	ACTGG	3 cut(s)	18, 488, 893
BseRI	GAGGAG	2 cut(s)	76, 79
BseXI	GCAGC	3 cut(s)	445, 526, 749
BsgI	GTGCAG	1 cut(s)	802
BshFI	GGCC	3 cut(s)	565, 599, 813
BsiHKAI	GWGCWC	1 cut(s)	685
BslI	CCNNNNNNNGG	2 cut(s)	284, 318
BsmAI	GTCTC	5 cut(s)	35, 137, 513, 520, 923
BsmBI	CGTCTC	1 cut(s)	923
BsnI	GGCC	3 cut(s)	565, 599, 813
Bso31I	GGTCTC	1 cut(s)	520
Bsp119I	TTCGAA	1 cut(s)	583
Bsp1286I	GDGCHC	1 cut(s)	685
Bsp1407I	TGTACA	1 cut(s)	714
Bsp143I	GATC	4 cut(s)	356, 575, 835, 948
Bsp1720I	GCTNAGC	1 cut(s)	34
Bsp19I	CCATGG	2 cut(s)	594, 844
BspACI	CCGC	1 cut(s)	1009
BspANI	GGCC	3 cut(s)	565, 599, 813
BspHI	TCATGA	1 cut(s)	951
BspLI	GGNNCC	1 cut(s)	566
BspPI	GGATC	3 cut(s)	364, 843, 956
BspT104I	TTCGAA	1 cut(s)	583
BspTNI	GGTCTC	1 cut(s)	520
BsrGI	TGTACA	1 cut(s)	714
BsrI	ACTGG	3 cut(s)	18, 488, 893
BssECI	CCNNGG	5 cut(s)	543, 594, 844, 911, 983
BssMI	GATC	4 cut(s)	356, 575, 835, 948
BssT1I	CCWWGG	5 cut(s)	543, 594, 844, 911, 983
Bst2UI	CCWGG	2 cut(s)	168, 195
Bst6I	CTCTTC	1 cut(s)	85
BstAUI	TGTACA	1 cut(s)	714
BstBI	TTCGAA	1 cut(s)	583
BstC8I	GCNNGC	1 cut(s)	164
BstDSI	CCRYGG	2 cut(s)	594, 844
BstF5I	GGATG	6 cut(s)	118, 566, 682, 814, 897, 924
BstKTI	GATC	4 cut(s)	359, 578, 838, 951
BstMAI	GTCTC	5 cut(s)	35, 137, 513, 520, 923
BstMBI	GATC	4 cut(s)	356, 575, 835, 948
BstMWI	GCNNNNNNNGC	5 cut(s)	163, 168, 545, 986, 1008
BstNI	CCWGG	2 cut(s)	168, 195
BstNSI	RCATGY	1 cut(s)	527
BstSCI	CCNGG	2 cut(s)	166, 193
BstSFI	CTRYAG	1 cut(s)	105
BstV1I	GCAGC	3 cut(s)	445, 526, 749
BstV2I	GAAGAC	2 cut(s)	315, 879
BstX2I	RGATCY	2 cut(s)	356, 835
BstYI	RGATCY	2 cut(s)	356, 835
BsuRI	GGCC	3 cut(s)	565, 599, 813
BtgI	CCRYGG	2 cut(s)	594, 844
BtrI	CACGTC	1 cut(s)	933
BtsCI	GGATG	6 cut(s)	118, 566, 682, 814, 897, 924
BtsI	GCAGTG	1 cut(s)	785
BtsIMutI	CAGTG	4 cut(s)	11, 618, 785, 924
Cac8I	GCNNGC	1 cut(s)	164
CciI	TCATGA	1 cut(s)	951
Cfr13I	GGNCC	1 cut(s)	564
Csp6I	GTAC	2 cut(s)	8, 715
CviAII	CATG	7 cut(s)	20, 524, 595, 673, 727, 845, 952
CviQI	GTAC	2 cut(s)	8, 715
DpnI	GATC	4 cut(s)	358, 577, 837, 950
DpnII	GATC	4 cut(s)	356, 575, 835, 948
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco130I	CCWWGG	5 cut(s)	543, 594, 844, 911, 983
Eco31I	GGTCTC	1 cut(s)	520
Eco32I	GATATC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	381
EcoRII	CCWGG	2 cut(s)	166, 193
EcoRV	GATATC	1 cut(s)	251
EcoT14I	CCWWGG	5 cut(s)	543, 594, 844, 911, 983
ErhI	CCWWGG	5 cut(s)	543, 594, 844, 911, 983
Esp3I	CGTCTC	1 cut(s)	923
FaeI	CATG	7 cut(s)	23, 527, 598, 676, 730, 848, 955
FatI	CATG	7 cut(s)	19, 523, 594, 672, 726, 844, 951
Fnu4HI	GCNGC	3 cut(s)	459, 540, 763
FokI	GGATG	6 cut(s)	125, 573, 689, 821, 904, 931
Fsp4HI	GCNGC	3 cut(s)	459, 540, 763
FspBI	CTAG	1 cut(s)	1015
GluI	GCNGC	3 cut(s)	459, 540, 763
HaeIII	GGCC	3 cut(s)	565, 599, 813
Hin1II	CATG	7 cut(s)	23, 527, 598, 676, 730, 848, 955
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HinfI	GANTC	1 cut(s)	823
HphI	GGTGA	4 cut(s)	410, 471, 760, 914
Hpy166II	GTNNAC	2 cut(s)	703, 924
Hpy188I	TCNGA	7 cut(s)	67, 307, 328, 361, 520, 853, 964
Hpy188III	TCNNGA	5 cut(s)	118, 182, 435, 800, 952
Hpy8I	GTNNAC	2 cut(s)	703, 924
HpyAV	CCTTC	4 cut(s)	273, 658, 691, 799
HpyCH4IV	ACGT	2 cut(s)	858, 932
HpyCH4V	TGCA	2 cut(s)	783, 1002
HpyF10VI	GCNNNNNNNGC	5 cut(s)	163, 168, 545, 986, 1008
HpySE526I	ACGT	2 cut(s)	858, 932
Hsp92II	CATG	7 cut(s)	23, 527, 598, 676, 730, 848, 955
Kzo9I	GATC	4 cut(s)	356, 575, 835, 948
LmnI	GCTCC	3 cut(s)	374, 688, 985
Lsp1109I	GCAGC	3 cut(s)	445, 526, 749
LweI	GCATC	3 cut(s)	298, 616, 882
MaeI	CTAG	1 cut(s)	1015
MaeII	ACGT	2 cut(s)	858, 932
MaeIII	GTNAC	1 cut(s)	477
MalI	GATC	4 cut(s)	358, 577, 837, 950
MboI	GATC	4 cut(s)	356, 575, 835, 948
MboII	GAAGA	6 cut(s)	39, 72, 315, 763, 830, 884
MfeI	CAATTG	1 cut(s)	969
MflI	RGATCY	2 cut(s)	356, 835
MhlI	GDGCHC	1 cut(s)	685
MluCI	AATT	5 cut(s)	198, 210, 570, 604, 969
MlyI	GAGTC	1 cut(s)	832
MroXI	GAANNNNTTC	2 cut(s)	755, 858
MseI	TTAA	1 cut(s)	708
MspA1I	CMGCKG	1 cut(s)	762
MspR9I	CCNGG	2 cut(s)	168, 195
MunI	CAATTG	1 cut(s)	969
MvaI	CCWGG	2 cut(s)	168, 195
MwoI	GCNNNNNNNGC	5 cut(s)	163, 168, 545, 986, 1008
NcoI	CCATGG	2 cut(s)	594, 844
NdeII	GATC	4 cut(s)	356, 575, 835, 948
NlaIII	CATG	7 cut(s)	23, 527, 598, 676, 730, 848, 955
NlaIV	GGNNCC	1 cut(s)	566
NmuCI	GTSAC	1 cut(s)	477
NspI	RCATGY	1 cut(s)	527
NspV	TTCGAA	1 cut(s)	583
PagI	TCATGA	1 cut(s)	951
PcsI	WCGNNNNNNNCGW	1 cut(s)	580
PdmI	GAANNNNTTC	2 cut(s)	755, 858
PkrI	GCNGC	3 cut(s)	460, 541, 764
PleI	GAGTC	1 cut(s)	831
PpsI	GAGTC	1 cut(s)	831
Psp6I	CCWGG	2 cut(s)	166, 193
PspGI	CCWGG	2 cut(s)	166, 193
PspN4I	GGNNCC	1 cut(s)	566
PspPI	GGNCC	1 cut(s)	564
PsuI	RGATCY	2 cut(s)	356, 835
PvuII	CAGCTG	1 cut(s)	762
RsaI	GTAC	2 cut(s)	9, 716
RsaNI	GTAC	2 cut(s)	8, 715
SaqAI	TTAA	1 cut(s)	708
SatI	GCNGC	3 cut(s)	459, 540, 763
Sau3AI	GATC	4 cut(s)	356, 575, 835, 948
Sau96I	GGNCC	1 cut(s)	564
SchI	GAGTC	1 cut(s)	832
ScrFI	CCNGG	2 cut(s)	168, 195
SduI	GDGCHC	1 cut(s)	685
SfaNI	GCATC	3 cut(s)	298, 616, 882
SfcI	CTRYAG	1 cut(s)	105
SfuI	TTCGAA	1 cut(s)	583
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	5 cut(s)	198, 210, 570, 604, 969
SsiI	CCGC	1 cut(s)	1009
SspMI	CTAG	1 cut(s)	1015
StyD4I	CCNGG	2 cut(s)	166, 193
StyI	CCWWGG	5 cut(s)	543, 594, 844, 911, 983
TaiI	ACGT	2 cut(s)	861, 935
TaqI	TCGA	2 cut(s)	574, 583
TasI	AATT	5 cut(s)	198, 210, 570, 604, 969
TatI	WGTACW	1 cut(s)	714
Tru1I	TTAA	1 cut(s)	708
Tru9I	TTAA	1 cut(s)	708
TscAI	CASTG	4 cut(s)	18, 625, 785, 931
TseFI	GTSAC	1 cut(s)	477
TseI	GCWGC	3 cut(s)	458, 539, 762
Tsp45I	GTSAC	1 cut(s)	477
TspDTI	ATGAA	1 cut(s)	968
TspRI	CASTG	4 cut(s)	18, 625, 785, 931
XapI	RAATTY	1 cut(s)	604
XceI	RCATGY	1 cut(s)	527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	550
XmnI	GAANNNNTTC	2 cut(s)	755, 858
XspI	CTAG	1 cut(s)	1015

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.