Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003380

Physical Location & Seq

Genomic Coordinates Forward (+)

4690015 .. 4692899

Gene Structure 2885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016198

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTCTATGTCCTTGGAGCATGATTACATAGGCTTATCTGAGTCTGTTCCTTCAATGGATGCCTCTGACAAGTCTAACAAGGGAGCTGCTTTGAACCTCAAAGCCACTGAGCTCAGGCTGGGCTTGCCTGGGTCTGAGTCCCCAGAGAGAGATAGTGGTGGTGTGGAGGACAAAACTGGGTTTTCACTGCCTGTGCTTAAACCCTCTGTGTCTGGAGCCAAGAGGGTGTTCTCTGATGCCATTGATGGAGCTTCTGGGAAGTGGGTTTTCTCTGGGAGTGGTGGATCTGAGGCTGATTTGGCTAAAGGTGGTAACTTGGTTTCTCCTAGAGGTGTTAATGGTGGAAAAGGTCTTACTGGGCCTGAGTGTAAAAGTCAACCAATCTCTGCTGTGAAAGATGGGGTACAACAGTCCCCAAACCCTTTGCATGAGAAGAAGCCTCAGGTTTCTGCTCCTGCAGCAAAGGCACAGGTTGTTGGATGGCCACCAATTCGTCAATGTGGCCCACATGGAGTTTCAAGTCAAGATGGAATGAGTGAGAGTCGTTTAATGGATCTCCTCCATGGTGCTGAATACGTCCTCACTTATGAAGACAAGGATGGTGACTGGATGCTAGTTGGTGACGTTCCCTGGCAGATGTTCACTGACTCGTGTAGAAGGATGAGGATTATGAAGAGTTCAGAAGCTATAGGGCTAGCCCCAAGAGCCATGCAGAAGTGCAAAAATAGTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

245

Amino Acids

25.76

Weight (kDa)

6.44

Isoelectric Point (pI)

50.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	35 - 166	6.6e-12	AUX/IAA family
AUX_IAA	PF02309	166 - 235	6.4e-36	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29080
fragaria_vesca	FvH4_1g05630 FvH4_6g31930
malus_domestica	MD02G1057200.v1.1 MD09G1208000.v1.1 MD15G1191800.v1.1 MD17G1189100.v1.1
prunus_persica	Prupe.3G064200_v2.0.a1 Prupe.7G225600_v2.0.a1
pyrus_communis	pycom02g04630 pycom09g12420 pycom15g17170 pycom17g19740
rosa_chinensis	RchiOBHm_Chr2g0091261 RchiOBHm_Chr2g0139301
rosa_laevigata	RLG00000016198 RLG00000019806
rosa_multiflora	Rmu_sc0002270.1_g000025 Rmu_sc0002525.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105480 Rroxscaffold_2G00150310
rosa_rugosa	Rorug02G0015100 Rorug02G0015200 Rorug02G0356800 Rorug02G0356900
rosa_samantha	Rh2AG060800 Rh2AG406600 Rh2BG059500 Rh2BG417000 Rh2CG061400 Rh2CG392800 Rh2DG060100 Rh2DG426100
rosa_wichuraiana	Rw2G004900 Rw2G032950 Rw2G033210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	292, 561
AcoI	YGGCCR	1 cut(s)	482
AfaI	GTAC	1 cut(s)	405
AgsI	TTSAA	3 cut(s)	54, 94, 519
AjnI	CCWGG	2 cut(s)	127, 629
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	4 cut(s)	86, 112, 251, 686
AluI	AGCT	4 cut(s)	86, 112, 251, 686
Alw21I	GWGCWC	1 cut(s)	114
AlwI	GGATC	2 cut(s)	292, 561
AoxI	GGCC	3 cut(s)	359, 482, 502
ApeKI	GCWGC	2 cut(s)	86, 458
AspS9I	GGNCC	2 cut(s)	359, 503
AsuHPI	GGTGA	2 cut(s)	614, 632
AsuNHI	GCTAGC	1 cut(s)	694
AxyI	CCTNAGG	1 cut(s)	441
BaeI	ACNNNNGTAYC	2 cut(s)	395, 428
BalI	TGGCCA	1 cut(s)	484
BanII	GRGCYC	1 cut(s)	114
BauI	CACGAG	1 cut(s)	649
BbsI	GAAGAC	1 cut(s)	597
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	73, 470
BccI	CCATC	5 cut(s)	239, 392, 474, 521, 593
BciT130I	CCWGG	2 cut(s)	129, 631
BfaI	CTAG	3 cut(s)	327, 614, 695
BfmI	CTRYAG	2 cut(s)	456, 687
BisI	GCNGC	2 cut(s)	87, 459
BlsI	GCNGC	2 cut(s)	88, 460
Bme1390I	CCNGG	2 cut(s)	129, 631
BmgT120I	GGNCC	2 cut(s)	359, 503
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	2 cut(s)	129, 631
BmrI	ACTGGG	2 cut(s)	186, 366
BmsI	GCATC	3 cut(s)	49, 226, 600
BmtI	GCTAGC	1 cut(s)	698
BmuI	ACTGGG	2 cut(s)	186, 366
BpiI	GAAGAC	1 cut(s)	597
BpmI	CTGGAG	1 cut(s)	234
Bpu10I	CCTNAGC	1 cut(s)	113
BsaJI	CCNNGG	4 cut(s)	12, 128, 562, 629
Bse1I	ACTGG	3 cut(s)	181, 361, 611
Bse21I	CCTNAGG	1 cut(s)	441
BseBI	CCWGG	2 cut(s)	129, 631
BseDI	CCNNGG	4 cut(s)	12, 128, 562, 629
BseGI	GGATG	5 cut(s)	64, 485, 604, 615, 666
BseMII	CTCAG	7 cut(s)	30, 99, 126, 127, 279, 354, 455
BseNI	ACTGG	3 cut(s)	181, 361, 611
BseRI	GAGGAG	1 cut(s)	548
BseXI	GCAGC	2 cut(s)	73, 470
BseYI	CCCAGC	1 cut(s)	118
BshFI	GGCC	3 cut(s)	361, 484, 504
BsiHKAI	GWGCWC	1 cut(s)	114
BslFI	GGGAC	2 cut(s)	124, 397
BsmFI	GGGAC	2 cut(s)	124, 397
BsnI	GGCC	3 cut(s)	361, 484, 504
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	284, 553
Bsp19I	CCATGG	1 cut(s)	562
BspANI	GGCC	3 cut(s)	361, 484, 504
BspCNI	CTCAG	7 cut(s)	31, 100, 126, 127, 280, 355, 454
BspLI	GGNNCC	1 cut(s)	217
BspMAI	CTGCAG	1 cut(s)	460
BspOI	GCTAGC	1 cut(s)	698
BspPI	GGATC	2 cut(s)	292, 561
BsrI	ACTGG	3 cut(s)	181, 361, 611
BssECI	CCNNGG	4 cut(s)	12, 128, 562, 629
BssMI	GATC	2 cut(s)	284, 553
BssSI	CACGAG	1 cut(s)	649
BssT1I	CCWWGG	2 cut(s)	12, 562
Bst2BI	CACGAG	1 cut(s)	649
Bst2UI	CCWGG	2 cut(s)	129, 631
Bst4CI	ACNGT	1 cut(s)	411
Bst6I	CTCTTC	1 cut(s)	668
BstC8I	GCNNGC	2 cut(s)	125, 696
BstDEI	CTNAG	7 cut(s)	39, 108, 113, 135, 288, 363, 441
BstDSI	CCRYGG	1 cut(s)	562
BstF5I	GGATG	5 cut(s)	64, 485, 604, 615, 666
BstKTI	GATC	2 cut(s)	287, 556
BstMBI	GATC	2 cut(s)	284, 553
BstMWI	GCNNNNNNNGC	5 cut(s)	124, 299, 458, 464, 704
BstNI	CCWGG	2 cut(s)	129, 631
BstSCI	CCNGG	2 cut(s)	127, 629
BstSFI	CTRYAG	2 cut(s)	456, 687
BstV1I	GCAGC	2 cut(s)	73, 470
BstV2I	GAAGAC	1 cut(s)	597
BstX2I	RGATCY	2 cut(s)	284, 553
BstYI	RGATCY	2 cut(s)	284, 553
Bsu36I	CCTNAGG	1 cut(s)	441
BsuRI	GGCC	3 cut(s)	361, 484, 504
BtgI	CCRYGG	1 cut(s)	562
BtsCI	GGATG	5 cut(s)	64, 485, 604, 615, 666
BtsI	GCAGTG	1 cut(s)	185
BtsIMutI	CAGTG	3 cut(s)	105, 185, 642
Cac8I	GCNNGC	2 cut(s)	125, 696
Cfr13I	GGNCC	2 cut(s)	359, 503
Csp6I	GTAC	1 cut(s)	404
CviAII	CATG	5 cut(s)	20, 428, 509, 563, 709
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	7 cut(s)	39, 108, 113, 135, 288, 363, 441
DpnI	GATC	2 cut(s)	286, 555
DpnII	GATC	2 cut(s)	284, 553
EaeI	YGGCCR	1 cut(s)	482
Eam1104I	CTCTTC	1 cut(s)	668
EarI	CTCTTC	1 cut(s)	668
Ecl136II	GAGCTC	1 cut(s)	112
Eco130I	CCWWGG	2 cut(s)	12, 562
Eco24I	GRGCYC	1 cut(s)	114
Eco53kI	GAGCTC	1 cut(s)	112
Eco81I	CCTNAGG	1 cut(s)	441
EcoICRI	GAGCTC	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	127, 629
EcoT14I	CCWWGG	2 cut(s)	12, 562
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	2 cut(s)	12, 562
FaeI	CATG	5 cut(s)	23, 431, 512, 566, 712
FaqI	GGGAC	2 cut(s)	124, 397
FatI	CATG	5 cut(s)	19, 427, 508, 562, 708
Fnu4HI	GCNGC	2 cut(s)	87, 459
FokI	GGATG	5 cut(s)	71, 492, 611, 622, 673
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	2 cut(s)	87, 459
FspBI	CTAG	3 cut(s)	327, 614, 695
GluI	GCNGC	2 cut(s)	87, 459
GsaI	CCCAGC	1 cut(s)	122
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	3 cut(s)	361, 484, 504
Hin1II	CATG	5 cut(s)	23, 431, 512, 566, 712
HincII	GTYRAC	1 cut(s)	377
HindII	GTYRAC	1 cut(s)	377
HinfI	GANTC	4 cut(s)	41, 137, 541, 647
HphI	GGTGA	2 cut(s)	614, 632
Hpy166II	GTNNAC	2 cut(s)	377, 642
Hpy188I	TCNGA	6 cut(s)	40, 67, 136, 235, 289, 682
Hpy188III	TCNNGA	2 cut(s)	213, 524
Hpy8I	GTNNAC	2 cut(s)	377, 642
HpyAV	CCTTC	2 cut(s)	60, 651
HpyCH4III	ACNGT	1 cut(s)	411
HpyCH4IV	ACGT	2 cut(s)	576, 624
HpyCH4V	TGCA	4 cut(s)	427, 458, 712, 720
HpyF10VI	GCNNNNNNNGC	5 cut(s)	124, 299, 458, 464, 704
HpyF3I	CTNAG	7 cut(s)	39, 108, 113, 135, 288, 363, 441
HpySE526I	ACGT	2 cut(s)	576, 624
Hsp92II	CATG	5 cut(s)	23, 431, 512, 566, 712
Kzo9I	GATC	2 cut(s)	284, 553
LmnI	GCTCC	5 cut(s)	16, 83, 215, 248, 457
Lsp1109I	GCAGC	2 cut(s)	73, 470
LweI	GCATC	3 cut(s)	49, 226, 600
MaeI	CTAG	3 cut(s)	327, 614, 695
MaeII	ACGT	2 cut(s)	576, 624
MaeIII	GTNAC	3 cut(s)	311, 602, 620
MalI	GATC	2 cut(s)	286, 555
MboI	GATC	2 cut(s)	284, 553
MboII	GAAGA	3 cut(s)	445, 602, 685
MflI	RGATCY	2 cut(s)	284, 553
MhlI	GDGCHC	1 cut(s)	114
MlsI	TGGCCA	1 cut(s)	484
MluCI	AATT	2 cut(s)	489, 730
MluNI	TGGCCA	1 cut(s)	484
MlyI	GAGTC	4 cut(s)	50, 146, 550, 641
MmeI	TCCRAC	1 cut(s)	457
Mox20I	TGGCCA	1 cut(s)	484
MscI	TGGCCA	1 cut(s)	484
MseI	TTAA	3 cut(s)	198, 336, 548
Msp20I	TGGCCA	1 cut(s)	484
MspR9I	CCNGG	2 cut(s)	129, 631
MvaI	CCWGG	2 cut(s)	129, 631
MwoI	GCNNNNNNNGC	5 cut(s)	124, 299, 458, 464, 704
NcoI	CCATGG	1 cut(s)	562
NdeII	GATC	2 cut(s)	284, 553
NheI	GCTAGC	1 cut(s)	694
NlaIII	CATG	5 cut(s)	23, 431, 512, 566, 712
NlaIV	GGNNCC	1 cut(s)	217
NmuCI	GTSAC	2 cut(s)	602, 620
PkrI	GCNGC	2 cut(s)	88, 460
PleI	GAGTC	4 cut(s)	49, 145, 549, 641
PpsI	GAGTC	4 cut(s)	49, 145, 549, 641
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	2 cut(s)	127, 629
PspFI	CCCAGC	1 cut(s)	118
PspGI	CCWGG	2 cut(s)	127, 629
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	2 cut(s)	359, 503
PstI	CTGCAG	1 cut(s)	460
PsuI	RGATCY	2 cut(s)	284, 553
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
SacI	GAGCTC	1 cut(s)	114
SaqAI	TTAA	3 cut(s)	198, 336, 548
SatI	GCNGC	2 cut(s)	87, 459
Sau3AI	GATC	2 cut(s)	284, 553
Sau96I	GGNCC	2 cut(s)	359, 503
SchI	GAGTC	4 cut(s)	50, 146, 550, 641
ScrFI	CCNGG	2 cut(s)	129, 631
SduI	GDGCHC	1 cut(s)	114
SfaNI	GCATC	3 cut(s)	49, 226, 600
SfcI	CTRYAG	2 cut(s)	456, 687
Sse9I	AATT	2 cut(s)	489, 730
SspMI	CTAG	3 cut(s)	327, 614, 695
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	127, 629
StyI	CCWWGG	2 cut(s)	12, 562
TaaI	ACNGT	1 cut(s)	411
TaiI	ACGT	2 cut(s)	579, 627
TasI	AATT	2 cut(s)	489, 730
Tru1I	TTAA	3 cut(s)	198, 336, 548
Tru9I	TTAA	3 cut(s)	198, 336, 548
TscAI	CASTG	3 cut(s)	112, 192, 649
TseFI	GTSAC	2 cut(s)	602, 620
TseI	GCWGC	2 cut(s)	86, 458
Tsp45I	GTSAC	2 cut(s)	602, 620
TspDTI	ATGAA	2 cut(s)	603, 686
TspRI	CASTG	3 cut(s)	112, 192, 649
XspI	CTAG	3 cut(s)	327, 614, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.