Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003380

Physical Location & Seq

Genomic Coordinates Forward (+)

53532184 .. 53542562

Gene Structure 10379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG392800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGTCTGTACCACTGGAACATGACTACATAGGCTTAGCAGAGACTTCTTCAATGGAAAGAAGCTCTGATAGGATTTCCTCTTCCTCCTCCTCTGCCCACTCAACTACAGAGGATGTCAAGACCTCTGCTTTCAACCTCAAGGAGACTGAGCTGAGGCTTGGCTTGCCTGGCTCTCACTCTCCTGAGAGAAAACCAGGAATTGCTCTTTCAATTTTTCGCAAAGATTTGGAGGACAATAAGCAAAATGGATATCCTCTAAACCCTTCAAAAACCAACCCTGTGTCTGGTGCTAAGAGGGGTTTCTCTGATGCCATTGATGGGTCTTCTGAGAAATGGGTTTTTCGTATGAGTAATGGATCTGAAGCTGATAAAGGAGCAGTCTTGTTCTCTCCTAAAGGTGAGAGTAATGCTAAAACACAACAGCTATGTGTGTCTGGACAAACCAAGAAAGAGGTTGCTGCTTCTGTTGTTCCTCAGTCACCAAAGCCAGTCCAAGAGAAGCAGAAGTCTCAGGTCTCTGAGCATGTTAGTCCTCCTGCTGCCAATTCACATTCACTAAAAGCTCATTCTGGGCCTTCCAGGCTCGGGTCCCGCCCAACGAACAGGAGACCTCCGCCAAAGCCAATGCGAAGGTCAATTTGCGCTTCAGCCACGGTTGTTCACCAGCGGGATGCTCTACATGCAGAACGATCTCGACATGGCCGCCGCATCCCTCACCAACCAGCTTCGCGACCTCGACCTGCTGCTCAGATCTTGCGTGCTCCACCAGTCAAACGCCACCTCCGCCGTCTCGCCCCTCGCTCAGCAAACGATGAGTCGCGCAAGTTGGTGTTCGAATTCGGGGCTACCACATTGAAAGAGAAGGCGGGGCCCTCACTGTCGACCCAGAAAACACCTGGGCTGTTTCGGCATACGGCGGCGTTTCGGTCTTCATTGGCGCCTCCTCCGGCGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

318

Amino Acids

34.51

Weight (kDa)

10.52

Isoelectric Point (pI)

64.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29080
fragaria_vesca	FvH4_1g05630 FvH4_6g31930
malus_domestica	MD02G1057200.v1.1 MD09G1208000.v1.1 MD15G1191800.v1.1 MD17G1189100.v1.1
prunus_persica	Prupe.3G064200_v2.0.a1 Prupe.7G225600_v2.0.a1
pyrus_communis	pycom02g04630 pycom09g12420 pycom15g17170 pycom17g19740
rosa_chinensis	RchiOBHm_Chr2g0091261 RchiOBHm_Chr2g0139301
rosa_laevigata	RLG00000016198 RLG00000019806
rosa_multiflora	Rmu_sc0002270.1_g000025 Rmu_sc0002525.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105480 Rroxscaffold_2G00150310
rosa_rugosa	Rorug02G0015100 Rorug02G0015200 Rorug02G0356800 Rorug02G0356900
rosa_samantha	Rh2AG060800 Rh2AG406600 Rh2BG059500 Rh2BG417000 Rh2CG061400 Rh2CG392800 Rh2DG060100 Rh2DG426100
rosa_wichuraiana	Rw2G004900 Rw2G032950 Rw2G033210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	748
AccB1I	GGYRCC	1 cut(s)	937
AccI	GTMKAC	1 cut(s)	881
AccII	CGCG	2 cut(s)	730, 820
AciI	CCGC	8 cut(s)	592, 614, 667, 703, 706, 784, 866, 917
AclWI	GGATC	1 cut(s)	364
AcoI	YGGCCR	1 cut(s)	700
AcsI	RAATTY	1 cut(s)	836
AcuI	CTGAAG	2 cut(s)	381, 630
AcyI	GRCGYC	1 cut(s)	938
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	3 cut(s)	284, 318, 585
AgsI	TTSAA	5 cut(s)	51, 133, 210, 267, 856
AjnI	CCWGG	4 cut(s)	166, 193, 578, 895
AluBI	AGCT	6 cut(s)	63, 151, 365, 424, 563, 725
AluI	AGCT	6 cut(s)	63, 151, 365, 424, 563, 725
Alw21I	GWGCWC	1 cut(s)	763
Alw26I	GTCTC	6 cut(s)	35, 137, 513, 520, 601, 794
AlwI	GGATC	1 cut(s)	364
Ama87I	CYCGRG	1 cut(s)	584
AoxI	GGCC	3 cut(s)	572, 700, 869
ApaI	GGGCCC	1 cut(s)	873
ApeKI	GCWGC	3 cut(s)	458, 539, 743
ApoI	RAATTY	1 cut(s)	836
ArsI	GACNNNNNNTTYG	2 cut(s)	800, 832
AspLEI	GCGC	3 cut(s)	644, 822, 940
AspS9I	GGNCC	4 cut(s)	572, 588, 869, 870
AsuHPI	GGTGA	4 cut(s)	410, 471, 653, 707
AsuII	TTCGAA	1 cut(s)	834
AvaI	CYCGRG	1 cut(s)	584
AvaII	GGWCC	1 cut(s)	588
BaeGI	GKGCMC	1 cut(s)	873
BanI	GGYRCC	1 cut(s)	937
BanII	GRGCYC	1 cut(s)	873
BbsI	GAAGAC	2 cut(s)	315, 921
Bbv12I	GWGCWC	1 cut(s)	763
BbvCI	CCTCAGC	1 cut(s)	152
BbvI	GCAGC	3 cut(s)	445, 526, 730
BccI	CCATC	1 cut(s)	311
BceAI	ACGGC	2 cut(s)	771, 930
BciT130I	CCWGG	4 cut(s)	168, 195, 580, 897
BcoDI	GTCTC	6 cut(s)	35, 137, 513, 520, 601, 794
BfmI	CTRYAG	1 cut(s)	105
BfoI	RGCGCY	1 cut(s)	941
BfuAI	ACCTGC	1 cut(s)	748
BglI	GCCNNNNNGGC	1 cut(s)	580
BglII	AGATCT	1 cut(s)	750
BisI	GCNGC	6 cut(s)	459, 540, 703, 706, 744, 918
BlpI	GCTNAGC	2 cut(s)	34, 802
BlsI	GCNGC	6 cut(s)	460, 541, 704, 707, 745, 919
Bme1390I	CCNGG	4 cut(s)	168, 195, 580, 897
Bme18I	GGWCC	1 cut(s)	588
BmeT110I	CYCGRG	1 cut(s)	584
BmgT120I	GGNCC	4 cut(s)	572, 588, 869, 870
BmiI	GGNNCC	5 cut(s)	589, 590, 870, 871, 939
BmrFI	CCNGG	4 cut(s)	168, 195, 580, 897
BmsI	GCATC	3 cut(s)	298, 661, 717
BpiI	GAAGAC	2 cut(s)	315, 921
Bpu10I	CCTNAGC	1 cut(s)	152
Bpu1102I	GCTNAGC	2 cut(s)	34, 802
Bpu14I	TTCGAA	1 cut(s)	834
BpuEI	CTTGAG	1 cut(s)	122
BsaHI	GRCGYC	1 cut(s)	938
BsaI	GGTCTC	2 cut(s)	520, 601
BsaJI	CCNNGG	2 cut(s)	651, 896
BsaXI	ACNNNNNCTCC	2 cut(s)	765, 795
Bsc4I	CCNNNNNNNGG	3 cut(s)	284, 318, 585
Bse1I	ACTGG	3 cut(s)	18, 488, 767
BseBI	CCWGG	4 cut(s)	168, 195, 580, 897
BseDI	CCNNGG	2 cut(s)	651, 896
BseGI	GGATG	3 cut(s)	118, 676, 708
BseLI	CCNNNNNNNGG	3 cut(s)	284, 318, 585
BseMII	CTCAG	9 cut(s)	138, 143, 174, 318, 488, 510, 524, 761, 816
BseNI	ACTGG	3 cut(s)	18, 488, 767
BseRI	GAGGAG	3 cut(s)	76, 79, 933
BseSI	GKGCMC	1 cut(s)	873
BseXI	GCAGC	3 cut(s)	445, 526, 730
Bsh1236I	CGCG	2 cut(s)	730, 820
BshFI	GGCC	3 cut(s)	574, 702, 871
BshNI	GGYRCC	1 cut(s)	937
BsiHKAI	GWGCWC	1 cut(s)	763
BsiHKCI	CYCGRG	1 cut(s)	584
BsiSI	CCGG	1 cut(s)	947
BslFI	GGGAC	1 cut(s)	574
BslI	CCNNNNNNNGG	3 cut(s)	284, 318, 585
BsmAI	GTCTC	6 cut(s)	35, 137, 513, 520, 601, 794
BsmBI	CGTCTC	1 cut(s)	794
BsmFI	GGGAC	1 cut(s)	574
BsnI	GGCC	3 cut(s)	574, 702, 871
Bso31I	GGTCTC	2 cut(s)	520, 601
BsoBI	CYCGRG	1 cut(s)	584
Bsp119I	TTCGAA	1 cut(s)	834
Bsp120I	GGGCCC	1 cut(s)	869
Bsp1286I	GDGCHC	2 cut(s)	763, 873
Bsp143I	GATC	3 cut(s)	356, 689, 750
Bsp1720I	GCTNAGC	2 cut(s)	34, 802
Bsp68I	TCGCGA	1 cut(s)	730
BspACI	CCGC	8 cut(s)	592, 614, 667, 703, 706, 784, 866, 917
BspANI	GGCC	3 cut(s)	574, 702, 871
BspCNI	CTCAG	9 cut(s)	139, 144, 175, 319, 487, 511, 523, 760, 815
BspFNI	CGCG	2 cut(s)	730, 820
BspLI	GGNNCC	5 cut(s)	589, 590, 870, 871, 939
BspMI	ACCTGC	1 cut(s)	748
BspPI	GGATC	1 cut(s)	364
BspT104I	TTCGAA	1 cut(s)	834
BspT107I	GGYRCC	1 cut(s)	937
BspTNI	GGTCTC	2 cut(s)	520, 601
BsrI	ACTGG	3 cut(s)	18, 488, 767
BssECI	CCNNGG	2 cut(s)	651, 896
BssMI	GATC	3 cut(s)	356, 689, 750
BssNI	GRCGYC	1 cut(s)	938
Bst2UI	CCWGG	4 cut(s)	168, 195, 580, 897
Bst4CI	ACNGT	2 cut(s)	655, 879
Bst6I	CTCTTC	1 cut(s)	85
BstACI	GRCGYC	1 cut(s)	938
BstBI	TTCGAA	1 cut(s)	834
BstC8I	GCNNGC	2 cut(s)	164, 759
BstDSI	CCRYGG	1 cut(s)	651
BstF5I	GGATG	3 cut(s)	118, 676, 708
BstFNI	CGCG	2 cut(s)	730, 820
BstH2I	RGCGCY	1 cut(s)	941
BstHHI	GCGC	3 cut(s)	644, 822, 940
BstKTI	GATC	3 cut(s)	359, 692, 753
BstMAI	GTCTC	6 cut(s)	35, 137, 513, 520, 601, 794
BstMBI	GATC	3 cut(s)	356, 689, 750
BstMWI	GCNNNNNNNGC	6 cut(s)	163, 168, 580, 680, 783, 907
BstNI	CCWGG	4 cut(s)	168, 195, 580, 897
BstNSI	RCATGY	2 cut(s)	527, 683
BstSCI	CCNGG	4 cut(s)	166, 193, 578, 895
BstSFI	CTRYAG	1 cut(s)	105
BstSLI	GKGCMC	1 cut(s)	873
BstUI	CGCG	2 cut(s)	730, 820
BstV1I	GCAGC	3 cut(s)	445, 526, 730
BstV2I	GAAGAC	2 cut(s)	315, 921
BstX2I	RGATCY	2 cut(s)	356, 750
BstYI	RGATCY	2 cut(s)	356, 750
BsuRI	GGCC	3 cut(s)	574, 702, 871
BtgI	CCRYGG	1 cut(s)	651
BtsCI	GGATG	3 cut(s)	118, 676, 708
BtsIMutI	CAGTG	2 cut(s)	11, 875
BtuMI	TCGCGA	1 cut(s)	730
BveI	ACCTGC	1 cut(s)	748
Cac8I	GCNNGC	2 cut(s)	164, 759
CfoI	GCGC	3 cut(s)	644, 822, 940
Cfr13I	GGNCC	4 cut(s)	572, 588, 869, 870
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	4 cut(s)	20, 524, 680, 698
CviQI	GTAC	1 cut(s)	8
DinI	GGCGCC	1 cut(s)	939
DpnI	GATC	3 cut(s)	358, 691, 752
DpnII	GATC	3 cut(s)	356, 689, 750
EaeI	YGGCCR	1 cut(s)	700
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
EciI	GGCGGA	2 cut(s)	603, 773
Eco24I	GRGCYC	1 cut(s)	873
Eco31I	GGTCTC	2 cut(s)	520, 601
Eco32I	GATATC	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	588
Eco57I	CTGAAG	2 cut(s)	381, 630
Eco88I	CYCGRG	1 cut(s)	584
EcoO109I	RGGNCCY	3 cut(s)	588, 869, 870
EcoRI	GAATTC	1 cut(s)	836
EcoRII	CCWGG	4 cut(s)	166, 193, 578, 895
EcoRV	GATATC	1 cut(s)	251
EcoT38I	GRGCYC	1 cut(s)	873
EgeI	GGCGCC	1 cut(s)	939
EheI	GGCGCC	1 cut(s)	939
Esp3I	CGTCTC	1 cut(s)	794
FaeI	CATG	4 cut(s)	23, 527, 683, 701
FaiI	YATR	8 cut(s)	21, 29, 347, 427, 525, 681, 699, 912
FaqI	GGGAC	1 cut(s)	574
FatI	CATG	4 cut(s)	19, 523, 679, 697
FauI	CCCGC	3 cut(s)	599, 660, 859
FblI	GTMKAC	1 cut(s)	881
Fnu4HI	GCNGC	6 cut(s)	459, 540, 703, 706, 744, 918
FokI	GGATG	3 cut(s)	125, 683, 695
FriOI	GRGCYC	1 cut(s)	873
Fsp4HI	GCNGC	6 cut(s)	459, 540, 703, 706, 744, 918
GlaI	GCGC	3 cut(s)	643, 821, 939
GluI	GCNGC	6 cut(s)	459, 540, 703, 706, 744, 918
HaeII	RGCGCY	1 cut(s)	941
HaeIII	GGCC	3 cut(s)	574, 702, 871
HapII	CCGG	1 cut(s)	947
HhaI	GCGC	3 cut(s)	644, 822, 940
Hin1I	GRCGYC	1 cut(s)	938
Hin1II	CATG	4 cut(s)	23, 527, 683, 701
Hin6I	GCGC	3 cut(s)	642, 820, 938
HinP1I	GCGC	3 cut(s)	642, 820, 938
HincII	GTYRAC	1 cut(s)	882
HindII	GTYRAC	1 cut(s)	882
HinfI	GANTC	1 cut(s)	815
HpaII	CCGG	1 cut(s)	947
HphI	GGTGA	4 cut(s)	410, 471, 653, 707
Hpy166II	GTNNAC	2 cut(s)	661, 882
Hpy188I	TCNGA	6 cut(s)	67, 307, 328, 361, 520, 750
Hpy188III	TCNNGA	5 cut(s)	118, 182, 435, 693, 729
Hpy8I	GTNNAC	2 cut(s)	661, 882
HpyAV	CCTTC	4 cut(s)	273, 585, 624, 856
HpyCH4III	ACNGT	2 cut(s)	655, 879
HpyCH4V	TGCA	1 cut(s)	683
HpyF10VI	GCNNNNNNNGC	6 cut(s)	163, 168, 580, 680, 783, 907
Hsp92I	GRCGYC	1 cut(s)	938
Hsp92II	CATG	4 cut(s)	23, 527, 683, 701
HspAI	GCGC	3 cut(s)	642, 820, 938
KasI	GGCGCC	1 cut(s)	937
KflI	GGGWCCC	1 cut(s)	588
Kzo9I	GATC	3 cut(s)	356, 689, 750
LmnI	GCTCC	2 cut(s)	374, 766
Lsp1109I	GCAGC	3 cut(s)	445, 526, 730
LweI	GCATC	3 cut(s)	298, 661, 717
MaeIII	GTNAC	1 cut(s)	477
MalI	GATC	3 cut(s)	358, 691, 752
MboI	GATC	3 cut(s)	356, 689, 750
MboII	GAAGA	4 cut(s)	39, 72, 315, 921
MflI	RGATCY	2 cut(s)	356, 750
MhlI	GDGCHC	2 cut(s)	763, 873
MluCI	AATT	5 cut(s)	198, 210, 544, 636, 836
Mly113I	GGCGCC	1 cut(s)	938
MlyI	GAGTC	1 cut(s)	824
MspA1I	CMGCKG	1 cut(s)	667
MspI	CCGG	1 cut(s)	947
MspR9I	CCNGG	4 cut(s)	168, 195, 580, 897
MvaI	CCWGG	4 cut(s)	168, 195, 580, 897
MvnI	CGCG	2 cut(s)	730, 820
MwoI	GCNNNNNNNGC	6 cut(s)	163, 168, 580, 680, 783, 907
NarI	GGCGCC	1 cut(s)	938
NdeII	GATC	3 cut(s)	356, 689, 750
NlaIII	CATG	4 cut(s)	23, 527, 683, 701
NlaIV	GGNNCC	5 cut(s)	589, 590, 870, 871, 939
NmuCI	GTSAC	1 cut(s)	477
NruI	TCGCGA	1 cut(s)	730
NspI	RCATGY	2 cut(s)	527, 683
NspV	TTCGAA	1 cut(s)	834
PkrI	GCNGC	6 cut(s)	460, 541, 704, 707, 745, 919
PleI	GAGTC	1 cut(s)	823
PluTI	GGCGCC	1 cut(s)	941
PpsI	GAGTC	1 cut(s)	823
PpuMI	RGGWCCY	1 cut(s)	588
Psp5II	RGGWCCY	1 cut(s)	588
Psp6I	CCWGG	4 cut(s)	166, 193, 578, 895
PspGI	CCWGG	4 cut(s)	166, 193, 578, 895
PspN4I	GGNNCC	5 cut(s)	589, 590, 870, 871, 939
PspOMI	GGGCCC	1 cut(s)	869
PspPI	GGNCC	4 cut(s)	572, 588, 869, 870
PspPPI	RGGWCCY	1 cut(s)	588
PsuI	RGATCY	2 cut(s)	356, 750
RruI	TCGCGA	1 cut(s)	730
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
SalI	GTCGAC	1 cut(s)	880
SatI	GCNGC	6 cut(s)	459, 540, 703, 706, 744, 918
Sau3AI	GATC	3 cut(s)	356, 689, 750
Sau96I	GGNCC	4 cut(s)	572, 588, 869, 870
SchI	GAGTC	1 cut(s)	824
ScrFI	CCNGG	4 cut(s)	168, 195, 580, 897
SduI	GDGCHC	2 cut(s)	763, 873
SfaNI	GCATC	3 cut(s)	298, 661, 717
SfcI	CTRYAG	1 cut(s)	105
SfoI	GGCGCC	1 cut(s)	939
SfuI	TTCGAA	1 cut(s)	834
SinI	GGWCC	1 cut(s)	588
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	5 cut(s)	198, 210, 544, 636, 836
SsiI	CCGC	8 cut(s)	592, 614, 667, 703, 706, 784, 866, 917
SspDI	GGCGCC	1 cut(s)	937
StyD4I	CCNGG	4 cut(s)	166, 193, 578, 895
TaaI	ACNGT	2 cut(s)	655, 879
TaqI	TCGA	4 cut(s)	694, 736, 834, 881
TaqII	GACCGA	1 cut(s)	915
TasI	AATT	5 cut(s)	198, 210, 544, 636, 836
TauI	GCSGC	3 cut(s)	705, 708, 920
TscAI	CASTG	2 cut(s)	18, 882
TseFI	GTSAC	1 cut(s)	477
TseI	GCWGC	3 cut(s)	458, 539, 743
Tsp45I	GTSAC	1 cut(s)	477
TspDTI	ATGAA	1 cut(s)	921
TspRI	CASTG	2 cut(s)	18, 882
VpaK11BI	GGWCC	1 cut(s)	588
XapI	RAATTY	1 cut(s)	836
XceI	RCATGY	2 cut(s)	527, 683
XcmI	CCANNNNNNNNNTGG	1 cut(s)	893
XmiI	GTMKAC	1 cut(s)	881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.