Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000207

Physical Location & Seq

Genomic Coordinates Reverse (-)

45079439 .. 45084928

Gene Structure 5490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0356900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGCGATGGTGAGCGTCACCGTGAAGGAGTCGACGATAGTGAAGCCGTCGGAGGAGATGGCGCCGCGGTCGCTGTGGAACGCCAACGTCGACCTCGTGATTCCGAGTATGCACACCCCCAGCGTCTACTTCTACCGCCCGAACGGAGCGTCTAACTTCTTCGAGCCGCGCGTGCTCAAACACGCGCTCTCGAAGGCTCTGGTGCCGTTCTACCCCATGGCGGGGCGTCTGAAGCGCGACGACGACGGTCGTATCGAGATCGATTGTAATGGCGAGGGCGTGCTGTTTGTCGTCGCCGAGACAAGCTCTGTGATCGATGATTTTGGCGATTTTGCCCCCACTCTCGAGCTCCGGAAGCTCATCCCCACCGTTGATTACGCCGCTGGGATTGCTTCGTATCCGCTCCTGGTCTTGCAGGTCACATACTTCAAATGTGGTGGAGTGTCACTTGGTGTTGGCATGCAACATCATGTTGCAGATGGATTTTCTGGTCTCCACTTTGTGAATACATGGTCTGATATGGCTCGAGGTCTTGACCTTACAATTCCACCATTCATCGACAGGACATTACTTCGTGCCCGAGACCCACCTCAGCCTGAATTCCCTCACATTGAATACCAACCTGCTCCACCCATGAAACATCCCCAGCAAAGCACAAAACCTGGTGCGGAGGAGACAACTATCGCCATCTTTAGATTGACGCGTGAACAACTCAACACTTTGAAAGCCAAGTCTAAGGAAGATGGCAACACTGTCAACTATAGCTCATATGAGATGTTGGCAGGTCATGTTTGGAGATGTGCATGTAAGGCGCGTGAACTTCCCGATGATCAAGACACCAAATTATATATTGCTACTGATGGCAGGTCCAGATTGCAACCCCCACTCCCACCTGGTTACTTTGGCAATGTGATTTTCACAGCCACACCTATTGCTGTAGCTGGGGACCTCCAATCAAAACCAACATGGTATGCGGCAAGCAAGATTCACAATGCTTTGGTGCGTATGGACAATGATTATCTTAGATCCGCTCTTGACTACCTTGAGCTTCAGCCTGATCTTTCAGCCCTTGTCCGTGGGGCTCATACTTTTAGGTGTCCCAATCTTGGGATTACTAGTTGGGTTAGGCTGCCGATCCATGATGCCGATTTTGGGTGGGGTCGACCCATTTTCATGGGACCTGGTGGAATCGGATACGAGGGGCTGGCATTTATAATACCAAGTGCAACTAATGACGGGAGTTTATCAGTCGCCATTTCCCTGCAATCTGAACATATGAAATCATTTTCGAAGCTGCTGTACGACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

436

Amino Acids

48.25

Weight (kDa)

6.07

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	5 - 433	2.8e-111	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27300
fragaria_vesca	FvH4_3g15930 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g21350 FvH4_3g21400 FvH4_3g21400 FvH4_6g12332
malus_domestica	MD02G1167100.v1.1 MD02G1167200.v1.1 MD03G1185600.v1.1 MD05G1213900.v1.1 MD05G1214100.v1.1 MD05G1214200.v1.1 MD05G1214700.v1.1 MD05G1216300.v1.1 MD05G1216800.v1.1 MD05G1217300.v1.1 MD05G1218000.v1.1 MD11G1231100.v1.1 MD11G1231200.v1.1 MD11G1231400.v1.1 MD11G1231500.v1.1 MD11G1232400.v1.1 MD11G1232500.v1.1
prunus_persica	Prupe.4G142300_v2.0.a1 Prupe.4G142400_v2.0.a1 Prupe.4G142500_v2.0.a1 Prupe.4G142600_v2.0.a1 Prupe.4G142800_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195100_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195500_v2.0.a1 Prupe.4G195700_v2.0.a1 Prupe.4G195900_v2.0.a1
pyrus_communis	pycom03g16540 pycom05g19920 pycom11g20460 pycom11g20480 pycom11g20490 pycom11g20500 pycom11g20530
rosa_chinensis	RchiOBHm_Chr2g0139311 RchiOBHm_Chr2g0139351 RchiOBHm_Chr5g0026801 RchiOBHm_Chr5g0026851 RchiOBHm_Chr5g0026891 RchiOBHm_Chr5g0026911 RchiOBHm_Chr5g0036571 RchiOBHm_Chr5g0036591 RchiOBHm_Chr5g0036721 RchiOBHm_Chr5g0036741 RchiOBHm_Chr7g0222981
rosa_laevigata	RLG00000002006 RLG00000019807 RLG00000032964 RLG00000032968 RLG00000032969 RLG00000033706 RLG00000033708 RLG00000033712 RLG00000033716
rosa_multiflora	Rmu_co8256651.1_g000001 Rmu_co8279377.1_g000001 Rmu_co8429919.1_g000001 Rmu_co8490103.1_g000001 Rmu_sc0000774.1_g000002 Rmu_sc0002525.1_g000012 Rmu_sc0004223.1_g000008 Rmu_sc0004390.1_g000002 Rmu_sc0006059.1_g000014 Rmu_sc0006059.1_g000024 Rmu_sc0006514.1_g000020 Rmu_sc0014333.1_g000002 Rmu_ssc0000172.1_g000018 Rmu_ssc0000172.1_g000029
rosa_roxburghii	Rroxscaffold_1G00044230 Rroxscaffold_1G00044260 Rroxscaffold_1G00044320 Rroxscaffold_1G00044340 Rroxscaffold_1G00052560 Rroxscaffold_1G00052570 Rroxscaffold_1G00052660 Rroxscaffold_1G00052720 Rroxscaffold_2G00105450 Rroxscaffold_2G00105460
rosa_rugosa	Rorug02G0356900 Rorug02G0357000 Rorug02G0357100 Rorug02G0357200 Rorug02G0357300 Rorug02G0357400 Rorug02G0357500 Rorug02G0357600 Rorug05G0095400 Rorug05G0095500 Rorug05G0095500 Rorug05G0095600 Rorug05G0095700 Rorug05G0095800 Rorug05G0157700 Rorug05G0157800
rosa_samantha	Rh2AG406800 Rh2AG406900 Rh2BG417300 Rh2CG392900 Rh2DG426200 Rh5AG189300 Rh5AG249400 Rh5AG250100 Rh5BG186300 Rh5BG186900 Rh5BG187000 Rh5BG249500 Rh5BG250600 Rh5BG250900 Rh5BG251500 Rh5BG251800 Rh5CG205500 Rh5CG206300 Rh5CG206700 Rh5CG283000 Rh5CG283300 Rh5CG283500 Rh5DG188500 Rh5DG188700 Rh5DG258700 Rh5DG258900 Rh5DG259600 Rh5DG259900 Rh7CG375800 Rh7DG352500
rosa_wichuraiana	Rw2G032960 Rw2G032970 Rw2G033220 Rw2G033230 Rw5G017130 Rw5G017230 Rw5G022940 Rw5G022960 Rw5G022980 Rw7G030420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1214
Acc36I	ACCTGC	4 cut(s)	406, 631, 773, 855
AccB1I	GGYRCC	2 cut(s)	61, 202
AccBSI	CCGCTC	2 cut(s)	403, 1031
AccI	GTMKAC	4 cut(s)	32, 90, 126, 1162
AccII	CGCG	7 cut(s)	67, 169, 171, 185, 237, 703, 814
AccIII	TCCGGA	1 cut(s)	351
AclWI	GGATC	2 cut(s)	1020, 1129
AcsI	RAATTY	1 cut(s)	599
AcuI	CTGAAG	2 cut(s)	251, 1034
AcyI	GRCGYC	2 cut(s)	62, 226
AdeI	CACNNNGTG	2 cut(s)	452, 502
AfaI	GTAC	1 cut(s)	1301
AfiI	CCNNNNNNNGG	6 cut(s)	220, 221, 222, 1106, 1107, 1152
AflIII	ACRYGT	2 cut(s)	701, 1305
AgsI	TTSAA	3 cut(s)	430, 614, 724
AhlI	ACTAGT	1 cut(s)	1115
AjnI	CCWGG	4 cut(s)	405, 661, 892, 1180
AluBI	AGCT	7 cut(s)	306, 349, 358, 765, 941, 1048, 1294
AluI	AGCT	7 cut(s)	306, 349, 358, 765, 941, 1048, 1294
Alw21I	GWGCWC	2 cut(s)	177, 351
Alw26I	GTCTC	4 cut(s)	293, 497, 576, 668
AlwI	GGATC	2 cut(s)	1020, 1129
Ama87I	CYCGRG	3 cut(s)	344, 525, 579
Aor13HI	TCCGGA	1 cut(s)	351
ApeKI	GCWGC	2 cut(s)	1129, 1294
ApoI	RAATTY	1 cut(s)	599
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
AspLEI	GCGC	5 cut(s)	64, 171, 187, 237, 814
AspS9I	GGNCC	3 cut(s)	867, 946, 1178
AsuHPI	GGTGA	2 cut(s)	10, 22
AsuII	TTCGAA	1 cut(s)	1289
AvaI	CYCGRG	3 cut(s)	344, 525, 579
AvaII	GGWCC	3 cut(s)	867, 946, 1178
BaeGI	GKGCMC	1 cut(s)	580
BaeI	ACNNNNGTAYC	2 cut(s)	235, 268
BanI	GGYRCC	2 cut(s)	61, 202
BanII	GRGCYC	2 cut(s)	351, 1084
BarI	GAAGNNNNNNTAC	1 cut(s)	1283
BauI	CACGAG	1 cut(s)	95
Bbv12I	GWGCWC	2 cut(s)	177, 351
BbvCI	CCTCAGC	1 cut(s)	591
BbvI	GCAGC	2 cut(s)	1116, 1281
BccI	CCATC	5 cut(s)	52, 473, 695, 737, 854
BceAI	ACGGC	2 cut(s)	31, 190
BciT130I	CCWGG	4 cut(s)	407, 663, 894, 1182
BciVI	GTATCC	2 cut(s)	408, 1187
BclI	TGATCA	1 cut(s)	829
BcoDI	GTCTC	4 cut(s)	293, 497, 576, 668
BcuI	ACTAGT	1 cut(s)	1115
BfaI	CTAG	1 cut(s)	1116
BfmI	CTRYAG	2 cut(s)	760, 936
BfoI	RGCGCY	1 cut(s)	65
BfuAI	ACCTGC	4 cut(s)	406, 631, 773, 855
BfuI	GTATCC	2 cut(s)	408, 1187
BisI	GCNGC	6 cut(s)	65, 167, 381, 975, 1130, 1295
BlsI	GCNGC	6 cut(s)	66, 168, 382, 976, 1131, 1296
Bme1390I	CCNGG	4 cut(s)	407, 663, 894, 1182
Bme18I	GGWCC	3 cut(s)	867, 946, 1178
BmeT110I	CYCGRG	3 cut(s)	344, 525, 579
BmgT120I	GGNCC	3 cut(s)	867, 946, 1178
BmiI	GGNNCC	4 cut(s)	63, 204, 947, 1179
BmrFI	CCNGG	4 cut(s)	407, 663, 894, 1182
BmsI	GCATC	1 cut(s)	1132
BoxI	GACNNNNGTC	1 cut(s)	246
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
Bpu10I	CCTNAGC	1 cut(s)	591
Bpu14I	TTCGAA	1 cut(s)	1289
BpuEI	CTTGAG	1 cut(s)	1064
Bsa29I	ATCGAT	2 cut(s)	261, 315
BsaHI	GRCGYC	2 cut(s)	62, 226
BsaI	GGTCTC	2 cut(s)	497, 576
BsaJI	CCNNGG	3 cut(s)	65, 216, 1075
BsaWI	WCCGGW	1 cut(s)	351
BsaXI	ACNNNNNCTCC	2 cut(s)	870, 900
Bsc4I	CCNNNNNNNGG	6 cut(s)	220, 221, 222, 1106, 1107, 1152
Bse3DI	GCAATG	1 cut(s)	913
BseAI	TCCGGA	1 cut(s)	351
BseBI	CCWGG	4 cut(s)	407, 663, 894, 1182
BseCI	ATCGAT	2 cut(s)	261, 315
BseDI	CCNNGG	3 cut(s)	65, 216, 1075
BseGI	GGATG	2 cut(s)	360, 640
BseLI	CCNNNNNNNGG	6 cut(s)	220, 221, 222, 1106, 1107, 1152
BseMI	GCAATG	1 cut(s)	913
BseMII	CTCAG	1 cut(s)	605
BseRI	GAGGAG	2 cut(s)	68, 686
BseSI	GKGCMC	1 cut(s)	580
BseXI	GCAGC	2 cut(s)	1116, 1281
BseYI	CCCAGC	4 cut(s)	119, 383, 645, 941
Bsh1236I	CGCG	7 cut(s)	67, 169, 171, 185, 237, 703, 814
Bsh1285I	CGRYCG	2 cut(s)	71, 250
BshNI	GGYRCC	2 cut(s)	61, 202
BshVI	ATCGAT	2 cut(s)	261, 315
BsiEI	CGRYCG	2 cut(s)	71, 250
BsiHKAI	GWGCWC	2 cut(s)	177, 351
BsiHKCI	CYCGRG	3 cut(s)	344, 525, 579
BsiSI	CCGG	1 cut(s)	352
BslFI	GGGAC	3 cut(s)	959, 1083, 1191
BslI	CCNNNNNNNGG	6 cut(s)	220, 221, 222, 1106, 1107, 1152
BsmAI	GTCTC	4 cut(s)	293, 497, 576, 668
BsmFI	GGGAC	3 cut(s)	959, 1083, 1191
Bso31I	GGTCTC	2 cut(s)	497, 576
BsoBI	CYCGRG	3 cut(s)	344, 525, 579
Bsp119I	TTCGAA	1 cut(s)	1289
Bsp1286I	GDGCHC	4 cut(s)	177, 351, 580, 1084
Bsp13I	TCCGGA	1 cut(s)	351
Bsp143I	GATC	6 cut(s)	258, 312, 829, 1025, 1057, 1134
Bsp19I	CCATGG	1 cut(s)	216
BspCNI	CTCAG	1 cut(s)	604
BspDI	ATCGAT	2 cut(s)	261, 315
BspEI	TCCGGA	1 cut(s)	351
BspFNI	CGCG	7 cut(s)	67, 169, 171, 185, 237, 703, 814
BspLI	GGNNCC	4 cut(s)	63, 204, 947, 1179
BspMI	ACCTGC	4 cut(s)	406, 631, 773, 855
BspPI	GGATC	2 cut(s)	1020, 1129
BspT104I	TTCGAA	1 cut(s)	1289
BspT107I	GGYRCC	2 cut(s)	61, 202
BspTNI	GGTCTC	2 cut(s)	497, 576
BsrBI	CCGCTC	2 cut(s)	403, 1031
BsrDI	GCAATG	1 cut(s)	913
BssECI	CCNNGG	3 cut(s)	65, 216, 1075
BssMI	GATC	6 cut(s)	258, 312, 829, 1025, 1057, 1134
BssNI	GRCGYC	2 cut(s)	62, 226
BssSI	CACGAG	1 cut(s)	95
BssT1I	CCWWGG	1 cut(s)	216
Bst2BI	CACGAG	1 cut(s)	95
Bst2UI	CCWGG	4 cut(s)	407, 663, 894, 1182
Bst4CI	ACNGT	4 cut(s)	22, 248, 370, 754
BstACI	GRCGYC	2 cut(s)	62, 226
BstBI	TTCGAA	1 cut(s)	1289
BstC8I	GCNNGC	5 cut(s)	173, 281, 461, 979, 1206
BstDEI	CTNAG	3 cut(s)	591, 735, 1022
BstDSI	CCRYGG	3 cut(s)	65, 216, 1075
BstF5I	GGATG	2 cut(s)	360, 640
BstFNI	CGCG	7 cut(s)	67, 169, 171, 185, 237, 703, 814
BstH2I	RGCGCY	1 cut(s)	65
BstHHI	GCGC	5 cut(s)	64, 171, 187, 237, 814
BstKTI	GATC	6 cut(s)	261, 315, 832, 1028, 1060, 1137
BstMAI	GTCTC	4 cut(s)	293, 497, 576, 668
BstMBI	GATC	6 cut(s)	258, 312, 829, 1025, 1057, 1134
BstMCI	CGRYCG	2 cut(s)	71, 250
BstMWI	GCNNNNNNNGC	6 cut(s)	70, 172, 232, 355, 389, 809
BstNI	CCWGG	4 cut(s)	407, 663, 894, 1182
BstNSI	RCATGY	3 cut(s)	463, 807, 1309
BstPAI	GACNNNNGTC	1 cut(s)	246
BstSCI	CCNGG	4 cut(s)	405, 661, 892, 1180
BstSFI	CTRYAG	2 cut(s)	760, 936
BstSLI	GKGCMC	1 cut(s)	580
BstUI	CGCG	7 cut(s)	67, 169, 171, 185, 237, 703, 814
BstV1I	GCAGC	2 cut(s)	1116, 1281
BstX2I	RGATCY	1 cut(s)	1025
BstXI	CCANNNNNNTGG	1 cut(s)	1174
BstYI	RGATCY	1 cut(s)	1025
Bsu15I	ATCGAT	2 cut(s)	261, 315
BsuI	GTATCC	2 cut(s)	408, 1187
BsuTUI	ATCGAT	2 cut(s)	261, 315
BtgI	CCRYGG	3 cut(s)	65, 216, 1075
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	360, 640
BtsIMutI	CAGTG	1 cut(s)	750
BveI	ACCTGC	4 cut(s)	406, 631, 773, 855
Cac8I	GCNNGC	5 cut(s)	173, 281, 461, 979, 1206
CfoI	GCGC	5 cut(s)	64, 171, 187, 237, 814
Cfr13I	GGNCC	3 cut(s)	867, 946, 1178
Cfr42I	CCGCGG	1 cut(s)	68
ClaI	ATCGAT	2 cut(s)	261, 315
CseI	GACGC	5 cut(s)	4, 112, 138, 215, 709
CsiI	ACCWGGT	3 cut(s)	661, 892, 1180
Csp6I	GTAC	1 cut(s)	1300
CspCI	CAANNNNNGTGG	4 cut(s)	418, 453, 913, 948
CviQI	GTAC	1 cut(s)	1300
DdeI	CTNAG	3 cut(s)	591, 735, 1022
DinI	GGCGCC	1 cut(s)	63
DpnI	GATC	6 cut(s)	260, 314, 831, 1027, 1059, 1136
DpnII	GATC	6 cut(s)	258, 312, 829, 1025, 1057, 1134
DraIII	CACNNNGTG	2 cut(s)	452, 502
Ecl136II	GAGCTC	1 cut(s)	349
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	2 cut(s)	351, 1084
Eco31I	GGTCTC	2 cut(s)	497, 576
Eco47I	GGWCC	3 cut(s)	867, 946, 1178
Eco53kI	GAGCTC	1 cut(s)	349
Eco57I	CTGAAG	2 cut(s)	251, 1034
Eco88I	CYCGRG	3 cut(s)	344, 525, 579
EcoICRI	GAGCTC	1 cut(s)	349
EcoO109I	RGGNCCY	2 cut(s)	946, 1178
EcoRI	GAATTC	1 cut(s)	599
EcoRII	CCWGG	4 cut(s)	405, 661, 892, 1180
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	2 cut(s)	351, 1084
EgeI	GGCGCC	1 cut(s)	63
EheI	GGCGCC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	216
FaqI	GGGAC	3 cut(s)	959, 1083, 1191
FauI	CCCGC	1 cut(s)	214
FauNDI	CATATG	2 cut(s)	769, 1275
FbaI	TGATCA	1 cut(s)	829
FblI	GTMKAC	4 cut(s)	32, 90, 126, 1162
Fnu4HI	GCNGC	6 cut(s)	65, 167, 381, 975, 1130, 1295
FokI	GGATG	2 cut(s)	347, 627
FriOI	GRGCYC	2 cut(s)	351, 1084
Fsp4HI	GCNGC	6 cut(s)	65, 167, 381, 975, 1130, 1295
FspBI	CTAG	1 cut(s)	1116
GlaI	GCGC	5 cut(s)	63, 170, 186, 236, 813
GluI	GCNGC	6 cut(s)	65, 167, 381, 975, 1130, 1295
GsaI	CCCAGC	4 cut(s)	123, 387, 649, 945
HaeII	RGCGCY	1 cut(s)	65
HapII	CCGG	1 cut(s)	352
HgaI	GACGC	5 cut(s)	4, 112, 138, 215, 709
HhaI	GCGC	5 cut(s)	64, 171, 187, 237, 814
Hin1I	GRCGYC	2 cut(s)	62, 226
Hin6I	GCGC	5 cut(s)	62, 169, 185, 235, 812
HinP1I	GCGC	5 cut(s)	62, 169, 185, 235, 812
HincII	GTYRAC	4 cut(s)	33, 91, 757, 1163
HindII	GTYRAC	4 cut(s)	33, 91, 757, 1163
HinfI	GANTC	4 cut(s)	29, 100, 985, 1188
HpaII	CCGG	1 cut(s)	352
HphI	GGTGA	2 cut(s)	10, 22
Hpy166II	GTNNAC	7 cut(s)	33, 91, 127, 707, 757, 818, 1163
Hpy188I	TCNGA	6 cut(s)	52, 105, 231, 517, 1193, 1270
Hpy8I	GTNNAC	7 cut(s)	33, 91, 127, 707, 757, 818, 1163
Hpy99I	CGWCG	7 cut(s)	37, 52, 92, 242, 245, 248, 296
HpyAV	CCTTC	2 cut(s)	19, 187
HpyCH4III	ACNGT	4 cut(s)	22, 248, 370, 754
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	8 cut(s)	112, 415, 463, 476, 803, 877, 1226, 1264
HpyF10VI	GCNNNNNNNGC	6 cut(s)	70, 172, 232, 355, 389, 809
HpyF3I	CTNAG	3 cut(s)	591, 735, 1022
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	2 cut(s)	62, 226
HspAI	GCGC	5 cut(s)	62, 169, 185, 235, 812
KasI	GGCGCC	1 cut(s)	61
Kpn2I	TCCGGA	1 cut(s)	351
Ksp22I	TGATCA	1 cut(s)	829
KspI	CCGCGG	1 cut(s)	68
Kzo9I	GATC	6 cut(s)	258, 312, 829, 1025, 1057, 1134
LmnI	GCTCC	4 cut(s)	146, 354, 408, 631
Lsp1109I	GCAGC	2 cut(s)	1116, 1281
LweI	GCATC	1 cut(s)	1132
MabI	ACCWGGT	3 cut(s)	661, 892, 1180
MaeI	CTAG	1 cut(s)	1116
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	4 cut(s)	16, 418, 444, 896
MalI	GATC	6 cut(s)	260, 314, 831, 1027, 1059, 1136
MbiI	CCGCTC	2 cut(s)	403, 1031
MboI	GATC	6 cut(s)	258, 312, 829, 1025, 1057, 1134
MboII	GAAGA	2 cut(s)	151, 752
MflI	RGATCY	1 cut(s)	1025
MhlI	GDGCHC	4 cut(s)	177, 351, 580, 1084
MluCI	AATT	3 cut(s)	543, 599, 842
MluI	ACGCGT	1 cut(s)	701
Mly113I	GGCGCC	1 cut(s)	62
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	9 cut(s)	46, 104, 268, 521, 600, 615, 664, 959, 1192
MroI	TCCGGA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	1172
MspA1I	CMGCKG	2 cut(s)	67, 383
MspI	CCGG	1 cut(s)	352
MspR9I	CCNGG	4 cut(s)	407, 663, 894, 1182
MvaI	CCWGG	4 cut(s)	407, 663, 894, 1182
MvnI	CGCG	7 cut(s)	67, 169, 171, 185, 237, 703, 814
MwoI	GCNNNNNNNGC	6 cut(s)	70, 172, 232, 355, 389, 809
NarI	GGCGCC	1 cut(s)	62
NcoI	CCATGG	1 cut(s)	216
NdeI	CATATG	2 cut(s)	769, 1275
NdeII	GATC	6 cut(s)	258, 312, 829, 1025, 1057, 1134
NlaIV	GGNNCC	4 cut(s)	63, 204, 947, 1179
NmeAIII	GCCGAG	1 cut(s)	322
NmuCI	GTSAC	3 cut(s)	16, 418, 444
NspI	RCATGY	3 cut(s)	463, 807, 1309
NspV	TTCGAA	1 cut(s)	1289
PaeI	GCATGC	1 cut(s)	463
PaeR7I	CTCGAG	2 cut(s)	344, 525
PciI	ACATGT	1 cut(s)	1305
PcsI	WCGNNNNNNNCGW	4 cut(s)	87, 93, 168, 252
PfeI	GAWTC	3 cut(s)	100, 985, 1188
PkrI	GCNGC	6 cut(s)	66, 168, 382, 976, 1131, 1296
PleI	GAGTC	1 cut(s)	37
PluTI	GGCGCC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	37
PpuMI	RGGWCCY	2 cut(s)	946, 1178
PscI	ACATGT	1 cut(s)	1305
PshAI	GACNNNNGTC	1 cut(s)	246
PsiI	TTATAA	1 cut(s)	1214
Psp124BI	GAGCTC	1 cut(s)	351
Psp5II	RGGWCCY	2 cut(s)	946, 1178
Psp6I	CCWGG	4 cut(s)	405, 661, 892, 1180
PspFI	CCCAGC	4 cut(s)	119, 383, 645, 941
PspGI	CCWGG	4 cut(s)	405, 661, 892, 1180
PspN4I	GGNNCC	4 cut(s)	63, 204, 947, 1179
PspPI	GGNCC	3 cut(s)	867, 946, 1178
PspPPI	RGGWCCY	2 cut(s)	946, 1178
PspXI	VCTCGAGB	1 cut(s)	525
PsuI	RGATCY	1 cut(s)	1025
RsaI	GTAC	1 cut(s)	1301
RsaNI	GTAC	1 cut(s)	1300
RseI	CAYNNNNRTG	1 cut(s)	1172
SacI	GAGCTC	1 cut(s)	351
SacII	CCGCGG	1 cut(s)	68
SalI	GTCGAC	3 cut(s)	31, 89, 1161
SatI	GCNGC	6 cut(s)	65, 167, 381, 975, 1130, 1295
Sau3AI	GATC	6 cut(s)	258, 312, 829, 1025, 1057, 1134
Sau96I	GGNCC	3 cut(s)	867, 946, 1178
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	4 cut(s)	407, 663, 894, 1182
SduI	GDGCHC	4 cut(s)	177, 351, 580, 1084
SexAI	ACCWGGT	3 cut(s)	661, 892, 1180
SfaNI	GCATC	1 cut(s)	1132
SfcI	CTRYAG	2 cut(s)	760, 936
SfoI	GGCGCC	1 cut(s)	63
Sfr274I	CTCGAG	2 cut(s)	344, 525
Sfr303I	CCGCGG	1 cut(s)	68
SfuI	TTCGAA	1 cut(s)	1289
SgrBI	CCGCGG	1 cut(s)	68
SinI	GGWCC	3 cut(s)	867, 946, 1178
SlaI	CTCGAG	2 cut(s)	344, 525
SmiMI	CAYNNNNRTG	1 cut(s)	1172
SmlI	CTYRAG	3 cut(s)	344, 525, 1043
SmoI	CTYRAG	3 cut(s)	344, 525, 1043
SpeI	ACTAGT	1 cut(s)	1115
SphI	GCATGC	1 cut(s)	463
Sse9I	AATT	3 cut(s)	543, 599, 842
SspDI	GGCGCC	1 cut(s)	61
SspMI	CTAG	1 cut(s)	1116
SstI	GAGCTC	1 cut(s)	351
StyD4I	CCNGG	4 cut(s)	405, 661, 892, 1180
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	4 cut(s)	22, 248, 370, 754
TaiI	ACGT	1 cut(s)	90
TasI	AATT	3 cut(s)	543, 599, 842
TauI	GCSGC	4 cut(s)	67, 169, 383, 977
TfiI	GAWTC	3 cut(s)	100, 985, 1188
TscAI	CASTG	1 cut(s)	757
TseFI	GTSAC	3 cut(s)	16, 418, 444
TseI	GCWGC	2 cut(s)	1129, 1294
Tsp45I	GTSAC	3 cut(s)	16, 418, 444
TspDTI	ATGAA	4 cut(s)	544, 650, 1162, 1292
TspGWI	ACGGA	2 cut(s)	159, 1064
TspRI	CASTG	1 cut(s)	757
VpaK11BI	GGWCC	3 cut(s)	867, 946, 1178
XapI	RAATTY	1 cut(s)	599
XceI	RCATGY	3 cut(s)	463, 807, 1309
XhoI	CTCGAG	2 cut(s)	344, 525
XmiI	GTMKAC	4 cut(s)	32, 90, 126, 1162
XspI	CTAG	1 cut(s)	1116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.