Rmu_co8256651.1_g000001

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8256651.1
OG0000207
Physical Location & Seq
Reverse (-)
2 .. 689
688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8256651.1_g000001.1.cds

Sequence Viewer

Length: 688 bp
atgatcaacaccaccacaggggctctagttcttctcaacaacaacaagaccgttttttggtcatcaaattcgacgaaacaaacccagaatattagtcctgtcgttcagttactagacaatggcaatcttattctcagagacgagaaagaaggagcaaactccgaaagctatctgtggcaaagcttcgactatccgtcggatactttgttaccggggatgaagctgggatgggacctgagaaccgggctgaaccggagactgacggcgtggaagagtccagatgacccttctcctggagacttcatatgggagatgcagctgcataactatcctgagccagctatgttcagagcgggcaaagagtttttgaggagtggtccgtggaatggtgttttattcagtggaaaaccggcaaaggcgctaccggcattgaacttcagcttcttcatggatgagaatgaggtttacacaacaattggaatggtggacaagtcagcattagggaggatgatgctgaatttaactgcagattactaccgccagtcgtggatttggtctgaagcagaccgaaattggacactctatgcagcatttcctagggatccttgtgacagttatgccaagtgtggaggaaatggaaactgcatgcttagtgaatccccgatgtgtcaatgtttagacaggttca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

229

Amino Acids

25.99

Weight (kDa)

5.09

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27300
fragaria_vesca FvH4_3g15930 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g21350 FvH4_3g21400 FvH4_3g21400 FvH4_6g12332
malus_domestica MD02G1167100.v1.1 MD02G1167200.v1.1 MD03G1185600.v1.1 MD05G1213900.v1.1 MD05G1214100.v1.1 MD05G1214200.v1.1 MD05G1214700.v1.1 MD05G1216300.v1.1 MD05G1216800.v1.1 MD05G1217300.v1.1 MD05G1218000.v1.1 MD11G1231100.v1.1 MD11G1231200.v1.1 MD11G1231400.v1.1 MD11G1231500.v1.1 MD11G1232400.v1.1 MD11G1232500.v1.1
prunus_persica Prupe.4G142300_v2.0.a1 Prupe.4G142400_v2.0.a1 Prupe.4G142500_v2.0.a1 Prupe.4G142600_v2.0.a1 Prupe.4G142800_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195100_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195500_v2.0.a1 Prupe.4G195700_v2.0.a1 Prupe.4G195900_v2.0.a1
pyrus_communis pycom03g16540 pycom05g19920 pycom11g20460 pycom11g20480 pycom11g20490 pycom11g20500 pycom11g20530
rosa_chinensis RchiOBHm_Chr2g0139311 RchiOBHm_Chr2g0139351 RchiOBHm_Chr5g0026801 RchiOBHm_Chr5g0026851 RchiOBHm_Chr5g0026891 RchiOBHm_Chr5g0026911 RchiOBHm_Chr5g0036571 RchiOBHm_Chr5g0036591 RchiOBHm_Chr5g0036721 RchiOBHm_Chr5g0036741 RchiOBHm_Chr7g0222981
rosa_laevigata RLG00000002006 RLG00000019807 RLG00000032964 RLG00000032968 RLG00000032969 RLG00000033706 RLG00000033708 RLG00000033712 RLG00000033716
rosa_multiflora Rmu_co8256651.1_g000001 Rmu_co8279377.1_g000001 Rmu_co8429919.1_g000001 Rmu_co8490103.1_g000001 Rmu_sc0000774.1_g000002 Rmu_sc0002525.1_g000012 Rmu_sc0004223.1_g000008 Rmu_sc0004390.1_g000002 Rmu_sc0006059.1_g000014 Rmu_sc0006059.1_g000024 Rmu_sc0006514.1_g000020 Rmu_sc0014333.1_g000002 Rmu_ssc0000172.1_g000018 Rmu_ssc0000172.1_g000029
rosa_roxburghii Rroxscaffold_1G00044230 Rroxscaffold_1G00044260 Rroxscaffold_1G00044320 Rroxscaffold_1G00044340 Rroxscaffold_1G00052560 Rroxscaffold_1G00052570 Rroxscaffold_1G00052660 Rroxscaffold_1G00052720 Rroxscaffold_2G00105450 Rroxscaffold_2G00105460
rosa_rugosa Rorug02G0356900 Rorug02G0357000 Rorug02G0357100 Rorug02G0357200 Rorug02G0357300 Rorug02G0357400 Rorug02G0357500 Rorug02G0357600 Rorug05G0095400 Rorug05G0095500 Rorug05G0095500 Rorug05G0095600 Rorug05G0095700 Rorug05G0095800 Rorug05G0157700 Rorug05G0157800
rosa_samantha Rh2AG406800 Rh2AG406900 Rh2BG417300 Rh2CG392900 Rh2DG426200 Rh5AG189300 Rh5AG249400 Rh5AG250100 Rh5BG186300 Rh5BG186900 Rh5BG187000 Rh5BG249500 Rh5BG250600 Rh5BG250900 Rh5BG251500 Rh5BG251800 Rh5CG205500 Rh5CG206300 Rh5CG206700 Rh5CG283000 Rh5CG283300 Rh5CG283500 Rh5DG188500 Rh5DG188700 Rh5DG258700 Rh5DG258900 Rh5DG259600 Rh5DG259900 Rh7CG375800 Rh7DG352500
rosa_wichuraiana Rw2G032960 Rw2G032970 Rw2G033220 Rw2G033230 Rw5G017130 Rw5G017230 Rw5G022940 Rw5G022960 Rw5G022980 Rw7G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 353
AciI CCGC 2 cut(s) 353, 538
AclWI GGATC 2 cut(s) 596, 609
AcsI RAATTY 2 cut(s) 67, 517
AcuI CTGAAG 2 cut(s) 421, 579
AfiI CCNNNNNNNGG 4 cut(s) 18, 57, 293, 386
AgsI TTSAA 1 cut(s) 433
AhdI GACNNNNNGTC 1 cut(s) 193
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 6 cut(s) 168, 183, 223, 319, 341, 441
AluI AGCT 6 cut(s) 168, 183, 223, 319, 341, 441
Alw26I GTCTC 3 cut(s) 132, 250, 291
AlwI GGATC 2 cut(s) 596, 609
ApeKI GCWGC 3 cut(s) 316, 319, 587
ApoI RAATTY 2 cut(s) 67, 517
AspA2I CCTAGG 1 cut(s) 596
AspLEI GCGC 1 cut(s) 421
AspS9I GGNCC 2 cut(s) 232, 377
AsuC2I CCSGG 2 cut(s) 213, 244
AvaII GGWCC 2 cut(s) 232, 377
AvrII CCTAGG 1 cut(s) 596
BamHI GGATCC 1 cut(s) 601
BanII GRGCYC 1 cut(s) 25
BbvI GCAGC 3 cut(s) 306, 328, 599
BccI CCATC 1 cut(s) 222
BceAI ACGGC 1 cut(s) 279
BciT130I CCWGG 1 cut(s) 294
BciVI GTATCC 1 cut(s) 193
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 2 cut(s) 213, 244
BcoDI GTCTC 3 cut(s) 132, 250, 291
BfaI CTAG 3 cut(s) 26, 113, 597
BfmI CTRYAG 1 cut(s) 525
BfoI RGCGCY 1 cut(s) 422
BfuI GTATCC 1 cut(s) 193
BisI GCNGC 3 cut(s) 317, 320, 588
BlnI CCTAGG 1 cut(s) 596
BlsI GCNGC 3 cut(s) 318, 321, 589
Bme1390I CCNGG 3 cut(s) 213, 244, 294
Bme18I GGWCC 2 cut(s) 232, 377
BmeRI GACNNNNNGTC 1 cut(s) 193
BmgT120I GGNCC 2 cut(s) 232, 377
BmiI GGNNCC 2 cut(s) 233, 603
BmrFI CCNGG 3 cut(s) 213, 244, 294
BmsI GCATC 2 cut(s) 303, 501
BpmI CTGGAG 1 cut(s) 315
Bpu10I CCTNAGC 1 cut(s) 333
BpuMI CCSGG 2 cut(s) 213, 244
BsaJI CCNNGG 3 cut(s) 212, 380, 596
BsaWI WCCGGW 1 cut(s) 252
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 57, 293, 386
Bse118I RCCGGY 2 cut(s) 409, 424
Bse1I ACTGG 1 cut(s) 541
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 3 cut(s) 212, 380, 596
BseGI GGATG 4 cut(s) 222, 233, 457, 513
BseLI CCNNNNNNNGG 4 cut(s) 18, 57, 293, 386
BseMII CTCAG 3 cut(s) 148, 227, 324
BseNI ACTGG 1 cut(s) 541
BseRI GAGGAG 1 cut(s) 385
BseXI GCAGC 3 cut(s) 306, 328, 599
BseYI CCCAGC 1 cut(s) 223
BsiSI CCGG 5 cut(s) 212, 243, 253, 410, 425
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 4 cut(s) 18, 57, 293, 386
BsmAI GTCTC 3 cut(s) 132, 250, 291
BsmBI CGTCTC 1 cut(s) 132
BsmFI GGGAC 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 2 cut(s) 3, 601
BspACI CCGC 2 cut(s) 353, 538
BspCNI CTCAG 3 cut(s) 147, 228, 325
BspLI GGNNCC 2 cut(s) 233, 603
BspMAI CTGCAG 1 cut(s) 529
BspPI GGATC 2 cut(s) 596, 609
BsrBI CCGCTC 1 cut(s) 353
BsrFI RCCGGY 2 cut(s) 409, 424
BsrI ACTGG 1 cut(s) 541
BssAI RCCGGY 2 cut(s) 409, 424
BssECI CCNNGG 3 cut(s) 212, 380, 596
BssMI GATC 2 cut(s) 3, 601
BssT1I CCWWGG 1 cut(s) 596
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 2 cut(s) 52, 614
Bst6I CTCTTC 1 cut(s) 266
BstC8I GCNNGC 3 cut(s) 339, 355, 647
BstDEI CTNAG 4 cut(s) 134, 236, 333, 650
BstDSI CCRYGG 1 cut(s) 380
BstF5I GGATG 4 cut(s) 222, 233, 457, 513
BstH2I RGCGCY 1 cut(s) 422
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 2 cut(s) 6, 604
BstMAI GTCTC 3 cut(s) 132, 250, 291
BstMBI GATC 2 cut(s) 3, 601
BstMWI GCNNNNNNNGC 1 cut(s) 425
BstNI CCWGG 1 cut(s) 294
BstNSI RCATGY 1 cut(s) 649
BstSCI CCNGG 3 cut(s) 211, 242, 292
BstSFI CTRYAG 1 cut(s) 525
BstV1I GCAGC 3 cut(s) 306, 328, 599
BstX2I RGATCY 1 cut(s) 601
BstYI RGATCY 1 cut(s) 601
BsuI GTATCC 1 cut(s) 193
BtgI CCRYGG 1 cut(s) 380
BtsCI GGATG 4 cut(s) 222, 233, 457, 513
BtsIMutI CAGTG 1 cut(s) 406
Cac8I GCNNGC 3 cut(s) 339, 355, 647
CfoI GCGC 1 cut(s) 421
Cfr10I RCCGGY 2 cut(s) 409, 424
Cfr13I GGNCC 2 cut(s) 232, 377
CviAII CATG 2 cut(s) 448, 646
CviJI RGCY 9 cut(s) 23, 168, 183, 223, 247, 319, 337, 341, 441
CviKI_1 RGCY 9 cut(s) 23, 168, 183, 223, 247, 319, 337, 341, 441
DdeI CTNAG 4 cut(s) 134, 236, 333, 650
DpnI GATC 2 cut(s) 5, 603
DpnII GATC 2 cut(s) 3, 601
DriI GACNNNNNGTC 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 266
Eam1105I GACNNNNNGTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 596
Eco24I GRGCYC 1 cut(s) 25
Eco47I GGWCC 2 cut(s) 232, 377
Eco57I CTGAAG 2 cut(s) 421, 579
EcoO109I RGGNCCY 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 596
EcoT38I GRGCYC 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 596
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 2 cut(s) 451, 649
FaiI YATR 8 cut(s) 305, 307, 324, 344, 449, 585, 618, 647
FaqI GGGAC 1 cut(s) 245
FatI CATG 2 cut(s) 447, 645
FauI CCCGC 1 cut(s) 346
FauNDI CATATG 1 cut(s) 305
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 3 cut(s) 317, 320, 588
FokI GGATG 4 cut(s) 229, 240, 464, 520
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 3 cut(s) 317, 320, 588
FspBI CTAG 3 cut(s) 26, 113, 597
GlaI GCGC 1 cut(s) 420
GluI GCNGC 3 cut(s) 317, 320, 588
GsaI CCCAGC 1 cut(s) 227
GsuI CTGGAG 1 cut(s) 315
HaeII RGCGCY 1 cut(s) 422
HapII CCGG 5 cut(s) 212, 243, 253, 410, 425
HhaI GCGC 1 cut(s) 421
Hin1II CATG 2 cut(s) 451, 649
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HindIII AAGCTT 1 cut(s) 181
HinfI GANTC 2 cut(s) 274, 656
HpaII CCGG 5 cut(s) 212, 243, 253, 410, 425
Hpy166II GTNNAC 2 cut(s) 466, 487
Hpy188I TCNGA 5 cut(s) 137, 163, 199, 350, 559
Hpy188III TCNNGA 2 cut(s) 278, 332
Hpy8I GTNNAC 2 cut(s) 466, 487
Hpy99I CGWCG 2 cut(s) 76, 199
HpyAV CCTTC 2 cut(s) 143, 297
HpyCH4III ACNGT 2 cut(s) 52, 614
HpyCH4V TGCA 5 cut(s) 316, 322, 527, 587, 645
HpyF10VI GCNNNNNNNGC 1 cut(s) 425
HpyF3I CTNAG 4 cut(s) 134, 236, 333, 650
Hsp92II CATG 2 cut(s) 451, 649
HspAI GCGC 1 cut(s) 419
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 601
LmnI GCTCC 1 cut(s) 152
Lsp1109I GCAGC 3 cut(s) 306, 328, 599
LweI GCATC 2 cut(s) 303, 501
MaeI CTAG 3 cut(s) 26, 113, 597
MaeIII GTNAC 3 cut(s) 108, 207, 608
MalI GATC 2 cut(s) 5, 603
MbiI CCGCTC 1 cut(s) 353
MboI GATC 2 cut(s) 3, 601
MboII GAAGA 3 cut(s) 23, 283, 436
MfeI CAATTG 1 cut(s) 474
MflI RGATCY 1 cut(s) 601
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 4 cut(s) 67, 474, 517, 571
MlyI GAGTC 1 cut(s) 283
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 4 cut(s) 363, 454, 498, 623
MseI TTAA 1 cut(s) 521
MspA1I CMGCKG 1 cut(s) 319
MspI CCGG 5 cut(s) 212, 243, 253, 410, 425
MspR9I CCNGG 3 cut(s) 213, 244, 294
MunI CAATTG 1 cut(s) 474
MvaI CCWGG 1 cut(s) 294
MwoI GCNNNNNNNGC 1 cut(s) 425
NciI CCSGG 2 cut(s) 213, 244
NdeI CATATG 1 cut(s) 305
NdeII GATC 2 cut(s) 3, 601
NlaIII CATG 2 cut(s) 451, 649
NlaIV GGNNCC 2 cut(s) 233, 603
NmuCI GTSAC 1 cut(s) 608
NspI RCATGY 1 cut(s) 649
PaeI GCATGC 1 cut(s) 649
PfeI GAWTC 1 cut(s) 656
PfoI TCCNGGA 1 cut(s) 292
PkrI GCNGC 3 cut(s) 318, 321, 589
PleI GAGTC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 282
PpuMI RGGWCCY 1 cut(s) 232
Psp5II RGGWCCY 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 292
PspFI CCCAGC 1 cut(s) 223
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 2 cut(s) 233, 603
PspPI GGNCC 2 cut(s) 232, 377
PspPPI RGGWCCY 1 cut(s) 232
PstI CTGCAG 1 cut(s) 529
PsuI RGATCY 1 cut(s) 601
PvuII CAGCTG 1 cut(s) 319
SaqAI TTAA 1 cut(s) 521
SatI GCNGC 3 cut(s) 317, 320, 588
Sau3AI GATC 2 cut(s) 3, 601
Sau96I GGNCC 2 cut(s) 232, 377
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 3 cut(s) 213, 244, 294
SduI GDGCHC 1 cut(s) 25
SetI ASST 9 cut(s) 170, 185, 225, 237, 321, 343, 443, 465, 686
SfaNI GCATC 2 cut(s) 303, 501
SfcI CTRYAG 1 cut(s) 525
SinI GGWCC 2 cut(s) 232, 377
SphI GCATGC 1 cut(s) 649
Sse9I AATT 4 cut(s) 67, 474, 517, 571
SsiI CCGC 2 cut(s) 353, 538
SspI AATATT 1 cut(s) 91
SspMI CTAG 3 cut(s) 26, 113, 597
StyD4I CCNGG 3 cut(s) 211, 242, 292
StyI CCWWGG 1 cut(s) 596
TaaI ACNGT 2 cut(s) 52, 614
TaqI TCGA 2 cut(s) 71, 186
TaqII GACCGA 1 cut(s) 582
TasI AATT 4 cut(s) 67, 474, 517, 571
TfiI GAWTC 1 cut(s) 656
Tru1I TTAA 1 cut(s) 521
Tru9I TTAA 1 cut(s) 521
TscAI CASTG 1 cut(s) 406
TseFI GTSAC 1 cut(s) 608
TseI GCWGC 3 cut(s) 316, 319, 587
Tsp45I GTSAC 1 cut(s) 608
TspDTI ATGAA 3 cut(s) 233, 292, 436
TspGWI ACGGA 2 cut(s) 183, 369
TspRI CASTG 1 cut(s) 406
VpaK11BI GGWCC 2 cut(s) 232, 377
XapI RAATTY 2 cut(s) 67, 517
XceI RCATGY 1 cut(s) 649
XmaJI CCTAGG 1 cut(s) 596
XspI CTAG 3 cut(s) 26, 113, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.