Rh5CG205500

divergent subfamily of APPLE domains

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
20799783 .. 20801105
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG205500.1

Sequence Viewer

Length: 1323 bp
ATGGATTACTTTCTTTCAGTAAGAAAATTACATTCTGATCAGAGATCAATGCAAGCCTTTAGAACCCTTTTTGTGTGCTACTTCTTTTTCTCCTCCGTAAAAACCCCATTTACAACTGCACTAGACGCTATCACTCCAAGTCAATATATTAGAGATGGTGAAACTCTAGTTTCTGCTGATGGAAACTTCGAACTGGGATTCTTTGGTAAGTCGAAAGGCCAATACTTGGGAATATGGTACACTTTCTCTACTGACATAGTTGTGTGGGTAGCCAACAGAGAAACACCGGTTAATGATTCTTCAGGAGTCTTAAAGCTCACTGATCAGGGAGTTTTAGTCCTTCTCAATAGCTCAAATGGCACTGTATGGTCAACCAATTCATCAAGAACTGCAGGGAATCCAGTCTTGCAACTCTTGGATTCGGGAAATCTTGTTGTGAAAGATGGAAATGATACTAGCCCTGATTACTTTCTTTGGCAGAGTTTTGATTATCCTTGTGACACACAACTACCAGGAATGAAACTTGGCCGGAACTTAGTTAATGGTTTAGACAGGTATCTCTCGTCCTGGAGGAGCACAGATGATCCTGCTCAAGGAGAGTTTTCACTACGGATGGATCCTCGTGGTTTACCTCAATTTTTTGAAGTTCAGGGAGCTAAGATACTGACTAGAGCAGGATCATGGAACGGCCTTCAATTGACTGGATATCAAAGGAGGCCAAATCCAATATCTGAGTTTGTATTTGTGTTGAATGAGACAGAAATCTATTATGAGTACACACTCCTCAACCGGTCTACGTTCTCTAGATATGTAATGAATCCATATGGCACTACACAGTGGTTAACATGGATAGACTACACAAATAGTTGGGAGCCTTTCTTTGCAAGCCAAGCAGATCAGTGTGAAATTTACGCTTTTTGTGGGGCTAATGCTAATTGTAATGTCAATGAAGCCCCCATGTGTGCATGCTTGAAAGGATTTGTACCTAAATCTCCACAAAAGTGGAACTCTTCACGTTGGTCTGATGGATGTGTTCGAAGGACTCCATTAGTTTGCAGTGATAGAGATGACTTCTTAATATATAGTAGATTTAAATTGCCAGACACATCTTCTTCCTGGTATGACAAGAGCATGAGCCTCAAGGAATGCAAGGAATTGTGTTTGAGAAACTGCTCGTGTACGGCTTATGCAAATTTAGATGTCAGGGAAGGGGGAAGTGGCTGCTTGCTTTGGTTTGGAAACCTCACTGACATAAGAGAATTTACCTCTGATTCTCAAGACCTCTATATACGAATAGCTTCTTCAGACACAGGTAGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

440

Amino Acids

49.89

Weight (kDa)

5.05

Isoelectric Point (pI)

37.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 87 - 191 6.2e-38 D-mannose binding lectin
S_locus_glycop PF00954 224 - 331 1.6e-23 S-locus glycoprotein domain
PAN_2 PF08276 352 - 418 7e-22 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27300
fragaria_vesca FvH4_3g15930 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g21350 FvH4_3g21400 FvH4_3g21400 FvH4_6g12332
malus_domestica MD02G1167100.v1.1 MD02G1167200.v1.1 MD03G1185600.v1.1 MD05G1213900.v1.1 MD05G1214100.v1.1 MD05G1214200.v1.1 MD05G1214700.v1.1 MD05G1216300.v1.1 MD05G1216800.v1.1 MD05G1217300.v1.1 MD05G1218000.v1.1 MD11G1231100.v1.1 MD11G1231200.v1.1 MD11G1231400.v1.1 MD11G1231500.v1.1 MD11G1232400.v1.1 MD11G1232500.v1.1
prunus_persica Prupe.4G142300_v2.0.a1 Prupe.4G142400_v2.0.a1 Prupe.4G142500_v2.0.a1 Prupe.4G142600_v2.0.a1 Prupe.4G142800_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195100_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195500_v2.0.a1 Prupe.4G195700_v2.0.a1 Prupe.4G195900_v2.0.a1
pyrus_communis pycom03g16540 pycom05g19920 pycom11g20460 pycom11g20480 pycom11g20490 pycom11g20500 pycom11g20530
rosa_chinensis RchiOBHm_Chr2g0139311 RchiOBHm_Chr2g0139351 RchiOBHm_Chr5g0026801 RchiOBHm_Chr5g0026851 RchiOBHm_Chr5g0026891 RchiOBHm_Chr5g0026911 RchiOBHm_Chr5g0036571 RchiOBHm_Chr5g0036591 RchiOBHm_Chr5g0036721 RchiOBHm_Chr5g0036741 RchiOBHm_Chr7g0222981
rosa_laevigata RLG00000002006 RLG00000019807 RLG00000032964 RLG00000032968 RLG00000032969 RLG00000033706 RLG00000033708 RLG00000033712 RLG00000033716
rosa_multiflora Rmu_co8256651.1_g000001 Rmu_co8279377.1_g000001 Rmu_co8429919.1_g000001 Rmu_co8490103.1_g000001 Rmu_sc0000774.1_g000002 Rmu_sc0002525.1_g000012 Rmu_sc0004223.1_g000008 Rmu_sc0004390.1_g000002 Rmu_sc0006059.1_g000014 Rmu_sc0006059.1_g000024 Rmu_sc0006514.1_g000020 Rmu_sc0014333.1_g000002 Rmu_ssc0000172.1_g000018 Rmu_ssc0000172.1_g000029
rosa_roxburghii Rroxscaffold_1G00044230 Rroxscaffold_1G00044260 Rroxscaffold_1G00044320 Rroxscaffold_1G00044340 Rroxscaffold_1G00052560 Rroxscaffold_1G00052570 Rroxscaffold_1G00052660 Rroxscaffold_1G00052720 Rroxscaffold_2G00105450 Rroxscaffold_2G00105460
rosa_rugosa Rorug02G0356900 Rorug02G0357000 Rorug02G0357100 Rorug02G0357200 Rorug02G0357300 Rorug02G0357400 Rorug02G0357500 Rorug02G0357600 Rorug05G0095400 Rorug05G0095500 Rorug05G0095500 Rorug05G0095600 Rorug05G0095700 Rorug05G0095800 Rorug05G0157700 Rorug05G0157800
rosa_samantha Rh2AG406800 Rh2AG406900 Rh2BG417300 Rh2CG392900 Rh2DG426200 Rh5AG189300 Rh5AG249400 Rh5AG250100 Rh5BG186300 Rh5BG186900 Rh5BG187000 Rh5BG249500 Rh5BG250600 Rh5BG250900 Rh5BG251500 Rh5BG251800 Rh5CG205500 Rh5CG206300 Rh5CG206700 Rh5CG283000 Rh5CG283300 Rh5CG283500 Rh5DG188500 Rh5DG188700 Rh5DG258700 Rh5DG258900 Rh5DG259600 Rh5DG259900 Rh7CG375800 Rh7DG352500
rosa_wichuraiana Rw2G032960 Rw2G032970 Rw2G033220 Rw2G033230 Rw5G017130 Rw5G017230 Rw5G022940 Rw5G022960 Rw5G022980 Rw7G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 226
AccI GTMKAC 1 cut(s) 794
AclWI GGATC 4 cut(s) 578, 611, 624, 685
AcoI YGGCCR 1 cut(s) 526
AcsI RAATTY 3 cut(s) 906, 1192, 1259
AcuI CTGAAG 2 cut(s) 285, 1287
AfaI GTAC 4 cut(s) 239, 776, 984, 1180
AfiI CCNNNNNNNGG 2 cut(s) 226, 593
AgeI ACCGGT 2 cut(s) 286, 789
AgsI TTSAA 4 cut(s) 644, 695, 751, 973
AjnI CCWGG 3 cut(s) 511, 566, 1115
AleI CACNNNNGTG 1 cut(s) 1000
AluBI AGCT 5 cut(s) 316, 351, 656, 1298, 1317
AluI AGCT 5 cut(s) 316, 351, 656, 1298, 1317
Alw21I GWGCWC 1 cut(s) 578
Alw26I GTCTC 1 cut(s) 749
AlwI GGATC 4 cut(s) 578, 611, 624, 685
AoxI GGCC 4 cut(s) 217, 526, 688, 716
ApeKI GCWGC 1 cut(s) 1221
ApoI RAATTY 3 cut(s) 906, 1192, 1259
AsiGI ACCGGT 2 cut(s) 286, 789
Asp700I GAANNNNTTC 1 cut(s) 1297
AsuHPI GGTGA 1 cut(s) 170
AsuII TTCGAA 2 cut(s) 189, 1036
BamHI GGATCC 1 cut(s) 616
BauI CACGAG 2 cut(s) 621, 1174
Bbv12I GWGCWC 1 cut(s) 578
BbvI GCAGC 1 cut(s) 1208
BccI CCATC 5 cut(s) 149, 173, 437, 607, 1019
BceAI ACGGC 2 cut(s) 703, 1197
BciT130I CCWGG 3 cut(s) 513, 568, 1117
BclI TGATCA 2 cut(s) 37, 322
BcoDI GTCTC 1 cut(s) 749
BfaI CTAG 5 cut(s) 122, 167, 456, 669, 804
BfmI CTRYAG 1 cut(s) 390
BisI GCNGC 1 cut(s) 1222
BlsI GCNGC 1 cut(s) 1223
Bme1390I CCNGG 3 cut(s) 513, 568, 1117
BmiI GGNNCC 2 cut(s) 618, 873
BmrFI CCNGG 3 cut(s) 513, 568, 1117
BmrI ACTGGG 1 cut(s) 203
BmuI ACTGGG 1 cut(s) 203
BpmI CTGGAG 1 cut(s) 589
Bpu14I TTCGAA 2 cut(s) 189, 1036
BpuEI CTTGAG 3 cut(s) 576, 1124, 1260
BsaWI WCCGGW 2 cut(s) 286, 789
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 593
Bse118I RCCGGY 2 cut(s) 286, 789
Bse1I ACTGG 3 cut(s) 198, 401, 706
BseBI CCWGG 3 cut(s) 513, 568, 1117
BseGI GGATG 2 cut(s) 618, 1034
BseLI CCNNNNNNNGG 2 cut(s) 226, 593
BseMII CTCAG 1 cut(s) 723
BseNI ACTGG 3 cut(s) 198, 401, 706
BseRI GAGGAG 3 cut(s) 82, 586, 773
BseXI GCAGC 1 cut(s) 1208
BsgI GTGCAG 1 cut(s) 102
BshFI GGCC 4 cut(s) 219, 528, 690, 718
BshTI ACCGGT 2 cut(s) 286, 789
BsiHKAI GWGCWC 1 cut(s) 578
BsiSI CCGG 3 cut(s) 287, 529, 790
BslI CCNNNNNNNGG 2 cut(s) 226, 593
BsmAI GTCTC 1 cut(s) 749
BsmI GAATGC 1 cut(s) 1151
BsnI GGCC 4 cut(s) 219, 528, 690, 718
Bsp119I TTCGAA 2 cut(s) 189, 1036
Bsp1286I GDGCHC 1 cut(s) 578
Bsp143I GATC 7 cut(s) 37, 44, 322, 583, 616, 677, 895
BspANI GGCC 4 cut(s) 219, 528, 690, 718
BspCNI CTCAG 1 cut(s) 724
BspLI GGNNCC 2 cut(s) 618, 873
BspMAI CTGCAG 1 cut(s) 394
BspPI GGATC 4 cut(s) 578, 611, 624, 685
BspT104I TTCGAA 2 cut(s) 189, 1036
BsrFI RCCGGY 2 cut(s) 286, 789
BsrI ACTGG 3 cut(s) 198, 401, 706
BssAI RCCGGY 2 cut(s) 286, 789
BssMI GATC 7 cut(s) 37, 44, 322, 583, 616, 677, 895
BssSI CACGAG 2 cut(s) 621, 1174
Bst2BI CACGAG 2 cut(s) 621, 1174
Bst2UI CCWGG 3 cut(s) 513, 568, 1117
Bst4CI ACNGT 2 cut(s) 364, 837
Bst6I CTCTTC 1 cut(s) 1015
BstBI TTCGAA 2 cut(s) 189, 1036
BstC8I GCNNGC 4 cut(s) 54, 886, 967, 1226
BstDEI CTNAG 3 cut(s) 535, 657, 732
BstENI CCTNNNNNAGG 1 cut(s) 591
BstF5I GGATG 2 cut(s) 618, 1034
BstKTI GATC 7 cut(s) 40, 47, 325, 586, 619, 680, 898
BstMAI GTCTC 1 cut(s) 749
BstMBI GATC 7 cut(s) 37, 44, 322, 583, 616, 677, 895
BstMWI GCNNNNNNNGC 3 cut(s) 125, 357, 890
BstNI CCWGG 3 cut(s) 513, 568, 1117
BstNSI RCATGY 1 cut(s) 969
BstSCI CCNGG 3 cut(s) 511, 566, 1115
BstSFI CTRYAG 1 cut(s) 390
BstV1I GCAGC 1 cut(s) 1208
BstX2I RGATCY 1 cut(s) 616
BstXI CCANNNNNNTGG 1 cut(s) 1002
BstYI RGATCY 1 cut(s) 616
BsuRI GGCC 4 cut(s) 219, 528, 690, 718
BtsCI GGATG 2 cut(s) 618, 1034
BtsI GCAGTG 1 cut(s) 1063
BtsIMutI CAGTG 6 cut(s) 318, 360, 842, 905, 1063, 1245
Cac8I GCNNGC 4 cut(s) 54, 886, 967, 1226
Cfr10I RCCGGY 2 cut(s) 286, 789
CseI GACGC 1 cut(s) 134
Csp6I GTAC 4 cut(s) 238, 775, 983, 1179
CspAI ACCGGT 2 cut(s) 286, 789
CviAII CATG 5 cut(s) 681, 846, 958, 966, 1132
CviQI GTAC 4 cut(s) 238, 775, 983, 1179
DdeI CTNAG 3 cut(s) 535, 657, 732
DpnI GATC 7 cut(s) 39, 46, 324, 585, 618, 679, 897
DpnII GATC 7 cut(s) 37, 44, 322, 583, 616, 677, 895
DraI TTTAAA 1 cut(s) 1093
EaeI YGGCCR 1 cut(s) 526
Eam1104I CTCTTC 1 cut(s) 1015
EarI CTCTTC 1 cut(s) 1015
Eco32I GATATC 1 cut(s) 707
Eco57I CTGAAG 2 cut(s) 285, 1287
EcoNI CCTNNNNNAGG 1 cut(s) 591
EcoRII CCWGG 3 cut(s) 511, 566, 1115
EcoRV GATATC 1 cut(s) 707
FaeI CATG 5 cut(s) 684, 849, 961, 969, 1135
FatI CATG 5 cut(s) 680, 845, 957, 965, 1131
FauNDI CATATG 1 cut(s) 823
FbaI TGATCA 2 cut(s) 37, 322
FblI GTMKAC 1 cut(s) 794
Fnu4HI GCNGC 1 cut(s) 1222
FokI GGATG 2 cut(s) 625, 1041
Fsp4HI GCNGC 1 cut(s) 1222
FspBI CTAG 5 cut(s) 122, 167, 456, 669, 804
GluI GCNGC 1 cut(s) 1222
GsuI CTGGAG 1 cut(s) 589
HaeIII GGCC 4 cut(s) 219, 528, 690, 718
HapII CCGG 3 cut(s) 287, 529, 790
HgaI GACGC 1 cut(s) 134
Hin1II CATG 5 cut(s) 684, 849, 961, 969, 1135
HincII GTYRAC 2 cut(s) 372, 843
HindII GTYRAC 2 cut(s) 372, 843
HinfI GANTC 8 cut(s) 198, 296, 306, 397, 419, 817, 1042, 1271
HpaI GTTAAC 1 cut(s) 843
HpaII CCGG 3 cut(s) 287, 529, 790
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 7 cut(s) 240, 372, 629, 777, 795, 843, 1179
Hpy188I TCNGA 6 cut(s) 37, 42, 733, 1024, 1270, 1306
Hpy188III TCNNGA 5 cut(s) 303, 384, 423, 804, 1277
Hpy8I GTNNAC 7 cut(s) 240, 372, 629, 777, 795, 843, 1179
HpyAV CCTTC 4 cut(s) 350, 701, 1032, 1202
HpyCH4III ACNGT 2 cut(s) 364, 837
HpyCH4IV ACGT 2 cut(s) 797, 1015
HpyCH4V TGCA 9 cut(s) 52, 119, 392, 409, 884, 965, 1056, 1149, 1190
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 357, 890
HpyF3I CTNAG 3 cut(s) 535, 657, 732
HpySE526I ACGT 2 cut(s) 797, 1015
Hsp92II CATG 5 cut(s) 684, 849, 961, 969, 1135
Ksp22I TGATCA 2 cut(s) 37, 322
KspAI GTTAAC 1 cut(s) 843
Kzo9I GATC 7 cut(s) 37, 44, 322, 583, 616, 677, 895
LmnI GCTCC 3 cut(s) 573, 653, 871
Lsp1109I GCAGC 1 cut(s) 1208
MaeI CTAG 5 cut(s) 122, 167, 456, 669, 804
MaeII ACGT 2 cut(s) 797, 1015
MaeIII GTNAC 1 cut(s) 497
MalI GATC 7 cut(s) 39, 46, 324, 585, 618, 679, 897
MboI GATC 7 cut(s) 37, 44, 322, 583, 616, 677, 895
MboII GAAGA 5 cut(s) 291, 1002, 1101, 1104, 1293
MfeI CAATTG 1 cut(s) 695
MflI RGATCY 1 cut(s) 616
MhlI GDGCHC 1 cut(s) 578
MlyI GAGTC 2 cut(s) 315, 1036
MroXI GAANNNNTTC 1 cut(s) 1297
MseI TTAA 6 cut(s) 291, 311, 540, 842, 1076, 1092
MslI CAYNNNNRTG 2 cut(s) 260, 1000
MspI CCGG 3 cut(s) 287, 529, 790
MspR9I CCNGG 3 cut(s) 513, 568, 1117
MunI CAATTG 1 cut(s) 695
Mva1269I GAATGC 1 cut(s) 1151
MvaI CCWGG 3 cut(s) 513, 568, 1117
MwoI GCNNNNNNNGC 3 cut(s) 125, 357, 890
NdeI CATATG 1 cut(s) 823
NdeII GATC 7 cut(s) 37, 44, 322, 583, 616, 677, 895
NlaIII CATG 5 cut(s) 684, 849, 961, 969, 1135
NlaIV GGNNCC 2 cut(s) 618, 873
NmuCI GTSAC 1 cut(s) 497
NspI RCATGY 1 cut(s) 969
NspV TTCGAA 2 cut(s) 189, 1036
OliI CACNNNNGTG 1 cut(s) 1000
PaeI GCATGC 1 cut(s) 969
PctI GAATGC 1 cut(s) 1151
PdmI GAANNNNTTC 1 cut(s) 1297
PfeI GAWTC 6 cut(s) 198, 296, 397, 419, 817, 1271
PflMI CCANNNNNTGG 1 cut(s) 226
PfoI TCCNGGA 1 cut(s) 566
PinAI ACCGGT 2 cut(s) 286, 789
PkrI GCNGC 1 cut(s) 1223
PleI GAGTC 2 cut(s) 314, 1036
PpsI GAGTC 2 cut(s) 314, 1036
Psp6I CCWGG 3 cut(s) 511, 566, 1115
PspGI CCWGG 3 cut(s) 511, 566, 1115
PspN4I GGNNCC 2 cut(s) 618, 873
PstI CTGCAG 1 cut(s) 394
PsuI RGATCY 1 cut(s) 616
RsaI GTAC 4 cut(s) 239, 776, 984, 1180
RsaNI GTAC 4 cut(s) 238, 775, 983, 1179
RseI CAYNNNNRTG 2 cut(s) 260, 1000
SaqAI TTAA 6 cut(s) 291, 311, 540, 842, 1076, 1092
SatI GCNGC 1 cut(s) 1222
Sau3AI GATC 7 cut(s) 37, 44, 322, 583, 616, 677, 895
SchI GAGTC 2 cut(s) 315, 1036
ScrFI CCNGG 3 cut(s) 513, 568, 1117
SduI GDGCHC 1 cut(s) 578
SfcI CTRYAG 1 cut(s) 390
SfuI TTCGAA 2 cut(s) 189, 1036
SmiI ATTTAAAT 1 cut(s) 1093
SmiMI CAYNNNNRTG 2 cut(s) 260, 1000
SmlI CTYRAG 3 cut(s) 591, 1139, 1275
SmoI CTYRAG 3 cut(s) 591, 1139, 1275
SphI GCATGC 1 cut(s) 969
SspMI CTAG 5 cut(s) 122, 167, 456, 669, 804
StyD4I CCNGG 3 cut(s) 511, 566, 1115
SwaI ATTTAAAT 1 cut(s) 1093
TaaI ACNGT 2 cut(s) 364, 837
TaiI ACGT 2 cut(s) 800, 1018
TaqI TCGA 3 cut(s) 189, 212, 1036
TatI WGTACW 1 cut(s) 774
TfiI GAWTC 6 cut(s) 198, 296, 397, 419, 817, 1271
Tru1I TTAA 6 cut(s) 291, 311, 540, 842, 1076, 1092
Tru9I TTAA 6 cut(s) 291, 311, 540, 842, 1076, 1092
TscAI CASTG 6 cut(s) 325, 367, 842, 905, 1063, 1252
TseFI GTSAC 1 cut(s) 497
TseI GCWGC 1 cut(s) 1221
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 4 cut(s) 369, 533, 830, 963
TspGWI ACGGA 2 cut(s) 85, 625
TspRI CASTG 6 cut(s) 325, 367, 842, 905, 1063, 1252
Van91I CCANNNNNTGG 1 cut(s) 226
XagI CCTNNNNNAGG 1 cut(s) 591
XapI RAATTY 3 cut(s) 906, 1192, 1259
XbaI TCTAGA 1 cut(s) 803
XceI RCATGY 1 cut(s) 969
XmiI GTMKAC 1 cut(s) 794
XmnI GAANNNNTTC 1 cut(s) 1297
XspI CTAG 5 cut(s) 122, 167, 456, 669, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.