Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000207

Physical Location & Seq

Genomic Coordinates Reverse (-)

45112213 .. 45113290

Gene Structure 1078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0357100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGAGGACTCCACCAGCCATATCTATTTCCCAGAATGGATTTATAACCTTTTAGAACATGGGAGCGATCTACGAATCCATATTGAGGACGATGGAGATGTTAAAGTTGCTCAAAAACTTGCAATCGTTGGCCTATGGTGCATTCAATGGCATCCGATCGGGCCTTTAGAAACTTGTATTCGTTCACTTTCGATGTTAGAGCATGACAGGCAGGCATCTTATTTGTCACCTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

78

Amino Acids

9.03

Weight (kDa)

4.79

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27300
fragaria_vesca	FvH4_3g15930 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g21350 FvH4_3g21400 FvH4_3g21400 FvH4_6g12332
malus_domestica	MD02G1167100.v1.1 MD02G1167200.v1.1 MD03G1185600.v1.1 MD05G1213900.v1.1 MD05G1214100.v1.1 MD05G1214200.v1.1 MD05G1214700.v1.1 MD05G1216300.v1.1 MD05G1216800.v1.1 MD05G1217300.v1.1 MD05G1218000.v1.1 MD11G1231100.v1.1 MD11G1231200.v1.1 MD11G1231400.v1.1 MD11G1231500.v1.1 MD11G1232400.v1.1 MD11G1232500.v1.1
prunus_persica	Prupe.4G142300_v2.0.a1 Prupe.4G142400_v2.0.a1 Prupe.4G142500_v2.0.a1 Prupe.4G142600_v2.0.a1 Prupe.4G142800_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195100_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195500_v2.0.a1 Prupe.4G195700_v2.0.a1 Prupe.4G195900_v2.0.a1
pyrus_communis	pycom03g16540 pycom05g19920 pycom11g20460 pycom11g20480 pycom11g20490 pycom11g20500 pycom11g20530
rosa_chinensis	RchiOBHm_Chr2g0139311 RchiOBHm_Chr2g0139351 RchiOBHm_Chr5g0026801 RchiOBHm_Chr5g0026851 RchiOBHm_Chr5g0026891 RchiOBHm_Chr5g0026911 RchiOBHm_Chr5g0036571 RchiOBHm_Chr5g0036591 RchiOBHm_Chr5g0036721 RchiOBHm_Chr5g0036741 RchiOBHm_Chr7g0222981
rosa_laevigata	RLG00000002006 RLG00000019807 RLG00000032964 RLG00000032968 RLG00000032969 RLG00000033706 RLG00000033708 RLG00000033712 RLG00000033716
rosa_multiflora	Rmu_co8256651.1_g000001 Rmu_co8279377.1_g000001 Rmu_co8429919.1_g000001 Rmu_co8490103.1_g000001 Rmu_sc0000774.1_g000002 Rmu_sc0002525.1_g000012 Rmu_sc0004223.1_g000008 Rmu_sc0004390.1_g000002 Rmu_sc0006059.1_g000014 Rmu_sc0006059.1_g000024 Rmu_sc0006514.1_g000020 Rmu_sc0014333.1_g000002 Rmu_ssc0000172.1_g000018 Rmu_ssc0000172.1_g000029
rosa_roxburghii	Rroxscaffold_1G00044230 Rroxscaffold_1G00044260 Rroxscaffold_1G00044320 Rroxscaffold_1G00044340 Rroxscaffold_1G00052560 Rroxscaffold_1G00052570 Rroxscaffold_1G00052660 Rroxscaffold_1G00052720 Rroxscaffold_2G00105450 Rroxscaffold_2G00105460
rosa_rugosa	Rorug02G0356900 Rorug02G0357000 Rorug02G0357100 Rorug02G0357200 Rorug02G0357300 Rorug02G0357400 Rorug02G0357500 Rorug02G0357600 Rorug05G0095400 Rorug05G0095500 Rorug05G0095500 Rorug05G0095600 Rorug05G0095700 Rorug05G0095800 Rorug05G0157700 Rorug05G0157800
rosa_samantha	Rh2AG406800 Rh2AG406900 Rh2BG417300 Rh2CG392900 Rh2DG426200 Rh5AG189300 Rh5AG249400 Rh5AG250100 Rh5BG186300 Rh5BG186900 Rh5BG187000 Rh5BG249500 Rh5BG250600 Rh5BG250900 Rh5BG251500 Rh5BG251800 Rh5CG205500 Rh5CG206300 Rh5CG206700 Rh5CG283000 Rh5CG283300 Rh5CG283500 Rh5DG188500 Rh5DG188700 Rh5DG258700 Rh5DG258900 Rh5DG259600 Rh5DG259900 Rh7CG375800 Rh7DG352500
rosa_wichuraiana	Rw2G032960 Rw2G032970 Rw2G033220 Rw2G033230 Rw5G017130 Rw5G017230 Rw5G022940 Rw5G022960 Rw5G022980 Rw7G030420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgsI	TTSAA	1 cut(s)	146
AoxI	GGCC	2 cut(s)	130, 161
AspS9I	GGNCC	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	219
BccI	CCATC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	161
BmsI	GCATC	2 cut(s)	160, 224
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	1 cut(s)	85
Bsh1285I	CGRYCG	1 cut(s)	159
BshFI	GGCC	2 cut(s)	132, 163
BsiEI	CGRYCG	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmI	GAATGC	1 cut(s)	141
BsnI	GGCC	2 cut(s)	132, 163
Bsp143I	GATC	2 cut(s)	67, 156
BspANI	GGCC	2 cut(s)	132, 163
BssMI	GATC	2 cut(s)	67, 156
BstC8I	GCNNGC	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	2 cut(s)	70, 159
BstMBI	GATC	2 cut(s)	67, 156
BstMCI	CGRYCG	1 cut(s)	159
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 208
BsuRI	GGCC	2 cut(s)	132, 163
BtsCI	GGATG	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	213
Cfr13I	GGNCC	1 cut(s)	161
CviAII	CATG	2 cut(s)	59, 203
CviJI	RGCY	3 cut(s)	18, 132, 163
CviKI_1	RGCY	3 cut(s)	18, 132, 163
DpnI	GATC	2 cut(s)	69, 158
DpnII	GATC	2 cut(s)	67, 156
FaeI	CATG	2 cut(s)	62, 206
FaiI	YATR	6 cut(s)	21, 45, 60, 81, 136, 204
FatI	CATG	2 cut(s)	58, 202
FokI	GGATG	1 cut(s)	138
HaeIII	GGCC	2 cut(s)	132, 163
Hin1II	CATG	2 cut(s)	62, 206
HinfI	GANTC	2 cut(s)	8, 75
HphI	GGTGA	1 cut(s)	219
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188I	TCNGA	1 cut(s)	156
Hpy8I	GTNNAC	1 cut(s)	185
HpyCH4V	TGCA	2 cut(s)	122, 141
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 208
Hsp92II	CATG	2 cut(s)	62, 206
Kzo9I	GATC	2 cut(s)	67, 156
LmnI	GCTCC	1 cut(s)	63
LpnPI	CCDG	4 cut(s)	28, 45, 193, 197
LweI	GCATC	2 cut(s)	160, 224
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	2 cut(s)	69, 158
MboI	GATC	2 cut(s)	67, 156
MlyI	GAGTC	1 cut(s)	2
MnlI	CCTC	1 cut(s)	79
MseI	TTAA	1 cut(s)	102
Mva1269I	GAATGC	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	138, 208
NdeII	GATC	2 cut(s)	67, 156
NlaIII	CATG	2 cut(s)	62, 206
NmuCI	GTSAC	1 cut(s)	225
PctI	GAATGC	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	75
Ple19I	CGATCG	1 cut(s)	159
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
PsiI	TTATAA	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	161
PvuI	CGATCG	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	102
Sau3AI	GATC	2 cut(s)	67, 156
Sau96I	GGNCC	1 cut(s)	161
SchI	GAGTC	1 cut(s)	2
SetI	ASST	2 cut(s)	51, 232
SfaNI	GCATC	2 cut(s)	160, 224
SgeI	CNNG	9 cut(s)	27, 44, 71, 131, 172, 186, 215, 220, 224
TaqI	TCGA	1 cut(s)	191
TfiI	GAWTC	1 cut(s)	75
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseFI	GTSAC	1 cut(s)	225
Tsp45I	GTSAC	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.