Rh5BG250900

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
30926449 .. 30927291
843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG250900.1

Sequence Viewer

Length: 843 bp
ATGGGATGGGACTTTAGGACAGGTCTTAAAAGGGAATTATCAGCATGGAAAAATTCAGAAGACCCATGTCCAGGAGAATTCACTTACGGGATTGAAATGGAGCCTCATGCATACCCTGAGGCATATCTTCGGAAAAGTGGTGTGAAATTTTATCGTTCTGGCCCATGGAATGGCCTAAGATTCAGTGGGGCACCAGAACTAGGGCCTAATTCAATTTATAGTTTTGATTTTGTGCATAATGATGATGAAGTGTACTACATGTACAAACTTCAAAACAAGTCTGTAATTTCAATTGTGGTCTTAAATGGAACCAGGAGTACGCGCCCACGCCTTACATGGATTGAAGCAGAGCAAACTTGGAGGGCCGCAACAGTATCTAGAGATTTCTGTGATCAATATGGCCTCTGTGGAGCAAATGCAGTGTGTATCGTTAGTAACAATCCAGTATGTCAATGTCTACAAGGATTCACGCCCATGTCACCAGAGAAATGGAATTTGACAGACTGGTCACTTGGATGTACGCGCAAGAAACCCCAAAGCTGCCAGGAAAGTGACAAAGACGGGTTTGTCAAATTCACTGACTTGAAATTGCCAGATACTACACATTCTTGGGTGAACAAAAGTATGAACATCAAGGAATGCAGAGCCGAATGCTTGAACAACTGTTCCTGTATGGCTTATACAAGCTCGGACATTAGAGCAGGAGGTTCTGGCTGCGCCATTTGGTTTGGTGATCTATTAGATATCAGACAGTTTCCGGGTGATGGCCAAGATCTATACATTCGAATGTTAGCTTCAGAGATAGGTAAATATGTAACTCTGTTACATGAACTGCTTCTTTAA

Protein Analysis

280

Amino Acids

31.76

Weight (kDa)

5.87

Isoelectric Point (pI)

48.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 51 - 159 5.2e-28 S-locus glycoprotein domain
PAN_2 PF08276 181 - 249 4.6e-23 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27300
fragaria_vesca FvH4_3g15930 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g21350 FvH4_3g21400 FvH4_3g21400 FvH4_6g12332
malus_domestica MD02G1167100.v1.1 MD02G1167200.v1.1 MD03G1185600.v1.1 MD05G1213900.v1.1 MD05G1214100.v1.1 MD05G1214200.v1.1 MD05G1214700.v1.1 MD05G1216300.v1.1 MD05G1216800.v1.1 MD05G1217300.v1.1 MD05G1218000.v1.1 MD11G1231100.v1.1 MD11G1231200.v1.1 MD11G1231400.v1.1 MD11G1231500.v1.1 MD11G1232400.v1.1 MD11G1232500.v1.1
prunus_persica Prupe.4G142300_v2.0.a1 Prupe.4G142400_v2.0.a1 Prupe.4G142500_v2.0.a1 Prupe.4G142600_v2.0.a1 Prupe.4G142800_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195100_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195500_v2.0.a1 Prupe.4G195700_v2.0.a1 Prupe.4G195900_v2.0.a1
pyrus_communis pycom03g16540 pycom05g19920 pycom11g20460 pycom11g20480 pycom11g20490 pycom11g20500 pycom11g20530
rosa_chinensis RchiOBHm_Chr2g0139311 RchiOBHm_Chr2g0139351 RchiOBHm_Chr5g0026801 RchiOBHm_Chr5g0026851 RchiOBHm_Chr5g0026891 RchiOBHm_Chr5g0026911 RchiOBHm_Chr5g0036571 RchiOBHm_Chr5g0036591 RchiOBHm_Chr5g0036721 RchiOBHm_Chr5g0036741 RchiOBHm_Chr7g0222981
rosa_laevigata RLG00000002006 RLG00000019807 RLG00000032964 RLG00000032968 RLG00000032969 RLG00000033706 RLG00000033708 RLG00000033712 RLG00000033716
rosa_multiflora Rmu_co8256651.1_g000001 Rmu_co8279377.1_g000001 Rmu_co8429919.1_g000001 Rmu_co8490103.1_g000001 Rmu_sc0000774.1_g000002 Rmu_sc0002525.1_g000012 Rmu_sc0004223.1_g000008 Rmu_sc0004390.1_g000002 Rmu_sc0006059.1_g000014 Rmu_sc0006059.1_g000024 Rmu_sc0006514.1_g000020 Rmu_sc0014333.1_g000002 Rmu_ssc0000172.1_g000018 Rmu_ssc0000172.1_g000029
rosa_roxburghii Rroxscaffold_1G00044230 Rroxscaffold_1G00044260 Rroxscaffold_1G00044320 Rroxscaffold_1G00044340 Rroxscaffold_1G00052560 Rroxscaffold_1G00052570 Rroxscaffold_1G00052660 Rroxscaffold_1G00052720 Rroxscaffold_2G00105450 Rroxscaffold_2G00105460
rosa_rugosa Rorug02G0356900 Rorug02G0357000 Rorug02G0357100 Rorug02G0357200 Rorug02G0357300 Rorug02G0357400 Rorug02G0357500 Rorug02G0357600 Rorug05G0095400 Rorug05G0095500 Rorug05G0095500 Rorug05G0095600 Rorug05G0095700 Rorug05G0095800 Rorug05G0157700 Rorug05G0157800
rosa_samantha Rh2AG406800 Rh2AG406900 Rh2BG417300 Rh2CG392900 Rh2DG426200 Rh5AG189300 Rh5AG249400 Rh5AG250100 Rh5BG186300 Rh5BG186900 Rh5BG187000 Rh5BG249500 Rh5BG250600 Rh5BG250900 Rh5BG251500 Rh5BG251800 Rh5CG205500 Rh5CG206300 Rh5CG206700 Rh5CG283000 Rh5CG283300 Rh5CG283500 Rh5DG188500 Rh5DG188700 Rh5DG258700 Rh5DG258900 Rh5DG259600 Rh5DG259900 Rh7CG375800 Rh7DG352500
rosa_wichuraiana Rw2G032960 Rw2G032970 Rw2G033220 Rw2G033230 Rw5G017130 Rw5G017230 Rw5G022940 Rw5G022960 Rw5G022980 Rw7G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 505, 566
AccB1I GGYRCC 1 cut(s) 190
AccB7I CCANNNNNTGG 1 cut(s) 170
AccI GTMKAC 1 cut(s) 457
AccII CGCG 2 cut(s) 322, 523
AciI CCGC 1 cut(s) 366
AcoI YGGCCR 1 cut(s) 766
AcsI RAATTY 5 cut(s) 52, 77, 146, 493, 572
AcuI CTGAAG 1 cut(s) 780
AfaI GTAC 4 cut(s) 254, 263, 319, 520
AfiI CCNNNNNNNGG 4 cut(s) 71, 170, 200, 764
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 7 cut(s) 95, 213, 272, 291, 344, 586, 658
AjnI CCWGG 3 cut(s) 70, 311, 543
AloI GAACNNNNNNTCC 2 cut(s) 650, 682
AluBI AGCT 3 cut(s) 540, 687, 794
AluI AGCT 3 cut(s) 540, 687, 794
AoxI GGCC 6 cut(s) 160, 172, 203, 363, 400, 766
ApeKI GCWGC 2 cut(s) 540, 714
ApoI RAATTY 5 cut(s) 52, 77, 146, 493, 572
Asp700I GAANNNNTTC 1 cut(s) 834
AspLEI GCGC 3 cut(s) 324, 525, 719
AspS9I GGNCC 3 cut(s) 161, 203, 363
AsuC2I CCSGG 1 cut(s) 759
AsuHPI GGTGA 4 cut(s) 471, 625, 743, 773
AsuII TTCGAA 1 cut(s) 784
AxyI CCTNAGG 1 cut(s) 117
BaeGI GKGCMC 1 cut(s) 193
BalI TGGCCA 1 cut(s) 768
BanI GGYRCC 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 66
BbvI GCAGC 2 cut(s) 527, 701
BccI CCATC 1 cut(s) 758
BciT130I CCWGG 3 cut(s) 72, 313, 545
BclI TGATCA 1 cut(s) 391
BcnI CCSGG 1 cut(s) 759
BfaI CTAG 2 cut(s) 200, 378
BglII AGATCT 1 cut(s) 772
BisI GCNGC 3 cut(s) 366, 541, 715
BlsI GCNGC 3 cut(s) 367, 542, 716
Bme1390I CCNGG 4 cut(s) 72, 313, 545, 759
BmgT120I GGNCC 3 cut(s) 161, 203, 363
BmiI GGNNCC 3 cut(s) 102, 192, 310
BmrFI CCNGG 4 cut(s) 72, 313, 545, 759
BoxI GACNNNNGTC 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 66
Bpu14I TTCGAA 1 cut(s) 784
BpuMI CCSGG 1 cut(s) 759
BsaJI CCNNGG 1 cut(s) 164
Bsc4I CCNNNNNNNGG 4 cut(s) 71, 170, 200, 764
Bse1I ACTGG 2 cut(s) 443, 509
Bse21I CCTNAGG 1 cut(s) 117
BseBI CCWGG 3 cut(s) 72, 313, 545
BseDI CCNNGG 1 cut(s) 164
BseGI GGATG 2 cut(s) 11, 521
BseLI CCNNNNNNNGG 4 cut(s) 71, 170, 200, 764
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 2 cut(s) 443, 509
BseSI GKGCMC 1 cut(s) 193
BseXI GCAGC 2 cut(s) 527, 701
Bsh1236I CGCG 2 cut(s) 322, 523
BshFI GGCC 6 cut(s) 162, 174, 205, 365, 402, 768
BshNI GGYRCC 1 cut(s) 190
BsiSI CCGG 1 cut(s) 758
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 4 cut(s) 71, 170, 200, 764
BsmFI GGGAC 1 cut(s) 23
BsmI GAATGC 2 cut(s) 644, 656
BsnI GGCC 6 cut(s) 162, 174, 205, 365, 402, 768
Bsp119I TTCGAA 1 cut(s) 784
Bsp1286I GDGCHC 1 cut(s) 193
Bsp1407I TGTACA 1 cut(s) 261
Bsp143I GATC 3 cut(s) 391, 733, 772
Bsp19I CCATGG 1 cut(s) 164
BspACI CCGC 1 cut(s) 366
BspANI GGCC 6 cut(s) 162, 174, 205, 365, 402, 768
BspCNI CTCAG 1 cut(s) 109
BspFNI CGCG 2 cut(s) 322, 523
BspLI GGNNCC 3 cut(s) 102, 192, 310
BspT104I TTCGAA 1 cut(s) 784
BspT107I GGYRCC 1 cut(s) 190
BsrGI TGTACA 1 cut(s) 261
BsrI ACTGG 2 cut(s) 443, 509
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 3 cut(s) 391, 733, 772
BssT1I CCWWGG 1 cut(s) 164
Bst2UI CCWGG 3 cut(s) 72, 313, 545
Bst4CI ACNGT 3 cut(s) 373, 665, 753
BstAUI TGTACA 1 cut(s) 261
BstBI TTCGAA 1 cut(s) 784
BstDEI CTNAG 2 cut(s) 117, 176
BstDSI CCRYGG 1 cut(s) 164
BstF5I GGATG 2 cut(s) 11, 521
BstFNI CGCG 2 cut(s) 322, 523
BstHHI GCGC 3 cut(s) 324, 525, 719
BstKTI GATC 3 cut(s) 394, 736, 775
BstMBI GATC 3 cut(s) 391, 733, 772
BstNI CCWGG 3 cut(s) 72, 313, 545
BstNSI RCATGY 1 cut(s) 262
BstPAI GACNNNNGTC 1 cut(s) 66
BstSCI CCNGG 4 cut(s) 70, 311, 543, 757
BstSLI GKGCMC 1 cut(s) 193
BstUI CGCG 2 cut(s) 322, 523
BstV1I GCAGC 2 cut(s) 527, 701
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 1 cut(s) 772
BstXI CCANNNNNNTGG 1 cut(s) 489
BstYI RGATCY 1 cut(s) 772
Bsu36I CCTNAGG 1 cut(s) 117
BsuRI GGCC 6 cut(s) 162, 174, 205, 365, 402, 768
BtgI CCRYGG 1 cut(s) 164
BtsCI GGATG 2 cut(s) 11, 521
BtsI GCAGTG 1 cut(s) 426
BtsIMutI CAGTG 3 cut(s) 190, 426, 576
CfoI GCGC 3 cut(s) 324, 525, 719
Cfr13I GGNCC 3 cut(s) 161, 203, 363
Csp6I GTAC 4 cut(s) 253, 262, 318, 519
CviAII CATG 8 cut(s) 45, 66, 107, 165, 259, 336, 475, 827
CviQI GTAC 4 cut(s) 253, 262, 318, 519
DdeI CTNAG 2 cut(s) 117, 176
DpnI GATC 3 cut(s) 393, 735, 774
DpnII GATC 3 cut(s) 391, 733, 772
DrdI GACNNNNNNGTC 2 cut(s) 505, 566
DseDI GACNNNNNNGTC 2 cut(s) 505, 566
EaeI YGGCCR 1 cut(s) 766
Eco130I CCWWGG 1 cut(s) 164
Eco32I GATATC 1 cut(s) 745
Eco57I CTGAAG 1 cut(s) 780
Eco81I CCTNAGG 1 cut(s) 117
EcoO109I RGGNCCY 1 cut(s) 203
EcoRI GAATTC 1 cut(s) 77
EcoRII CCWGG 3 cut(s) 70, 311, 543
EcoRV GATATC 1 cut(s) 745
EcoT14I CCWWGG 1 cut(s) 164
EcoT22I ATGCAT 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 8 cut(s) 48, 69, 110, 168, 262, 339, 478, 830
FaqI GGGAC 1 cut(s) 23
FatI CATG 8 cut(s) 44, 65, 106, 164, 258, 335, 474, 826
FbaI TGATCA 1 cut(s) 391
FblI GTMKAC 1 cut(s) 457
Fnu4HI GCNGC 3 cut(s) 366, 541, 715
FokI GGATG 2 cut(s) 18, 528
Fsp4HI GCNGC 3 cut(s) 366, 541, 715
FspBI CTAG 2 cut(s) 200, 378
GlaI GCGC 3 cut(s) 323, 524, 718
GluI GCNGC 3 cut(s) 366, 541, 715
HaeIII GGCC 6 cut(s) 162, 174, 205, 365, 402, 768
HapII CCGG 1 cut(s) 758
HhaI GCGC 3 cut(s) 324, 525, 719
Hin1II CATG 8 cut(s) 48, 69, 110, 168, 262, 339, 478, 830
Hin6I GCGC 3 cut(s) 322, 523, 717
HinP1I GCGC 3 cut(s) 322, 523, 717
HinfI GANTC 2 cut(s) 180, 465
HpaII CCGG 1 cut(s) 758
HphI GGTGA 4 cut(s) 471, 625, 743, 773
Hpy166II GTNNAC 3 cut(s) 253, 458, 616
Hpy188I TCNGA 5 cut(s) 58, 132, 691, 749, 799
Hpy188III TCNNGA 1 cut(s) 378
Hpy8I GTNNAC 3 cut(s) 253, 458, 616
HpyCH4III ACNGT 3 cut(s) 373, 665, 753
HpyCH4V TGCA 4 cut(s) 110, 235, 419, 642
HpyF3I CTNAG 2 cut(s) 117, 176
Hsp92II CATG 8 cut(s) 48, 69, 110, 168, 262, 339, 478, 830
HspAI GCGC 3 cut(s) 322, 523, 717
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 3 cut(s) 391, 733, 772
LmnI GCTCC 2 cut(s) 100, 410
Lsp1109I GCAGC 2 cut(s) 527, 701
MaeI CTAG 2 cut(s) 200, 378
MaeIII GTNAC 6 cut(s) 434, 477, 507, 551, 814, 822
MalI GATC 3 cut(s) 393, 735, 774
MboI GATC 3 cut(s) 391, 733, 772
MboII GAAGA 2 cut(s) 71, 119
MfeI CAATTG 1 cut(s) 291
MflI RGATCY 1 cut(s) 772
MhlI GDGCHC 1 cut(s) 193
MlsI TGGCCA 1 cut(s) 768
MluNI TGGCCA 1 cut(s) 768
MnlI CCTC 5 cut(s) 112, 114, 354, 413, 698
Mox20I TGGCCA 1 cut(s) 768
Mph1103I ATGCAT 1 cut(s) 112
MroXI GAANNNNTTC 1 cut(s) 834
MscI TGGCCA 1 cut(s) 768
MseI TTAA 3 cut(s) 27, 302, 841
MslI CAYNNNNRTG 4 cut(s) 240, 473, 514, 785
Msp20I TGGCCA 1 cut(s) 768
MspI CCGG 1 cut(s) 758
MspR9I CCNGG 4 cut(s) 72, 313, 545, 759
MunI CAATTG 1 cut(s) 291
Mva1269I GAATGC 2 cut(s) 644, 656
MvaI CCWGG 3 cut(s) 72, 313, 545
MvnI CGCG 2 cut(s) 322, 523
NciI CCSGG 1 cut(s) 759
NcoI CCATGG 1 cut(s) 164
NdeII GATC 3 cut(s) 391, 733, 772
NlaIII CATG 8 cut(s) 48, 69, 110, 168, 262, 339, 478, 830
NlaIV GGNNCC 3 cut(s) 102, 192, 310
NmuCI GTSAC 3 cut(s) 477, 507, 551
NsiI ATGCAT 1 cut(s) 112
NspI RCATGY 1 cut(s) 262
NspV TTCGAA 1 cut(s) 784
PciI ACATGT 1 cut(s) 258
PctI GAATGC 2 cut(s) 644, 656
PdmI GAANNNNTTC 1 cut(s) 834
PfeI GAWTC 2 cut(s) 180, 465
PflMI CCANNNNNTGG 1 cut(s) 170
PfoI TCCNGGA 1 cut(s) 70
PkrI GCNGC 3 cut(s) 367, 542, 716
PscI ACATGT 1 cut(s) 258
PshAI GACNNNNGTC 1 cut(s) 66
Psp6I CCWGG 3 cut(s) 70, 311, 543
PspGI CCWGG 3 cut(s) 70, 311, 543
PspN4I GGNNCC 3 cut(s) 102, 192, 310
PspPI GGNCC 3 cut(s) 161, 203, 363
PsrI GAACNNNNNNTAC 2 cut(s) 301, 333
PsuI RGATCY 1 cut(s) 772
RsaI GTAC 4 cut(s) 254, 263, 319, 520
RsaNI GTAC 4 cut(s) 253, 262, 318, 519
RseI CAYNNNNRTG 4 cut(s) 240, 473, 514, 785
SaqAI TTAA 3 cut(s) 27, 302, 841
SatI GCNGC 3 cut(s) 366, 541, 715
Sau3AI GATC 3 cut(s) 391, 733, 772
Sau96I GGNCC 3 cut(s) 161, 203, 363
ScrFI CCNGG 4 cut(s) 72, 313, 545, 759
SduI GDGCHC 1 cut(s) 193
SetI ASST 6 cut(s) 25, 542, 689, 709, 796, 808
SfuI TTCGAA 1 cut(s) 784
SmiMI CAYNNNNRTG 4 cut(s) 240, 473, 514, 785
SsiI CCGC 1 cut(s) 366
SspMI CTAG 2 cut(s) 200, 378
StyD4I CCNGG 4 cut(s) 70, 311, 543, 757
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 3 cut(s) 373, 665, 753
TaqI TCGA 1 cut(s) 784
TatI WGTACW 2 cut(s) 252, 261
TauI GCSGC 1 cut(s) 368
TfiI GAWTC 2 cut(s) 180, 465
Tru1I TTAA 3 cut(s) 27, 302, 841
Tru9I TTAA 3 cut(s) 27, 302, 841
TscAI CASTG 3 cut(s) 190, 426, 583
TseFI GTSAC 3 cut(s) 477, 507, 551
TseI GCWGC 2 cut(s) 540, 714
Tsp45I GTSAC 3 cut(s) 477, 507, 551
TspDTI ATGAA 3 cut(s) 261, 641, 843
TspRI CASTG 3 cut(s) 190, 426, 583
Van91I CCANNNNNTGG 1 cut(s) 170
XapI RAATTY 5 cut(s) 52, 77, 146, 493, 572
XbaI TCTAGA 1 cut(s) 377
XceI RCATGY 1 cut(s) 262
XcmI CCANNNNNNNNNTGG 1 cut(s) 333
XmiI GTMKAC 1 cut(s) 457
XmnI GAANNNNTTC 1 cut(s) 834
XspI CTAG 2 cut(s) 200, 378
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.