Rorug02G0357500

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
45121780 .. 45122637
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0357500.1

Sequence Viewer

Length: 858 bp
ATGGCCTCCATTGATGCTGTCACAGCAAGTTTTGCTGCTTCTCTAGCTCTTGCTTCGGGTGGTAGCGCCCCCGATCTGGGTAAGATTGGTGGTGGTCCGGTGCGCAAGTCATCTCAGTCTTTTCTACTTGGCAAGACTCTGACCCGCAAGCCGGTGGATCCCAAAGCTTTCAAGGCTCACTTCCACCGTACTTGGATGGTGGATAAGGATTTTAAGGTCCAGGAAAAGGCGGGCGATGTCTTCTTGTTCTCCTTTGAATCGCTTCGTGATCGGAACAAGATCCTACGGGGAGGAGTTTGGTCTTTTGATAGAGCTCCTGTGTGTTTTGAAATTTATGATGGGGTGAAGCCCCTGCATGAAGCCCAATTCAAGCATCTACGTGTTTGGGTTAGGGTTTTGGGGATTCCTCCTTTGTATGAAGAACCTGAGAATTTTACTCTTATCGGTAATCTCTTGGGTGGTTTCTTAGACTATGATAAGAAGGAATTCAAGAAGGGTGGGATTCAGATTTTCTTCACCCATGATATCTCTAAACCATTCTTGCTTGAGCGGAAGATTTTTTTGGATGTCGGCGTCGAACCGGTGCTTCAATTTCACTTTGAACATCTGAAAGGGAGATGTTCACAGTGTGGACTGGTCACGCATGCTGGGATTGCATGTGAGGAGCCGCATACTCCACTTCCGTCATCTAGGGTTTTGAACTTTCCAGGGCCGTCCATCTCAGGAGGGTCTTTTTCTTTTTCGGCTCAGACTAAGCGTGAATTCTTCACTGCTTCCTCATCTATCCCCAAAAAGAAGAACCCAACCTTTAGTCGTGTTGACAGCCCTAACCCTCCCTCTACTTCTCCCTCCGAGTAG

Protein Analysis

285

Amino Acids

31.52

Weight (kDa)

9.3

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 39 - 112 1.4e-07 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 175 - 221 2.2e-07 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27300
fragaria_vesca FvH4_3g15930 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g21350 FvH4_3g21400 FvH4_3g21400 FvH4_6g12332
malus_domestica MD02G1167100.v1.1 MD02G1167200.v1.1 MD03G1185600.v1.1 MD05G1213900.v1.1 MD05G1214100.v1.1 MD05G1214200.v1.1 MD05G1214700.v1.1 MD05G1216300.v1.1 MD05G1216800.v1.1 MD05G1217300.v1.1 MD05G1218000.v1.1 MD11G1231100.v1.1 MD11G1231200.v1.1 MD11G1231400.v1.1 MD11G1231500.v1.1 MD11G1232400.v1.1 MD11G1232500.v1.1
prunus_persica Prupe.4G142300_v2.0.a1 Prupe.4G142400_v2.0.a1 Prupe.4G142500_v2.0.a1 Prupe.4G142600_v2.0.a1 Prupe.4G142800_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195100_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195500_v2.0.a1 Prupe.4G195700_v2.0.a1 Prupe.4G195900_v2.0.a1
pyrus_communis pycom03g16540 pycom05g19920 pycom11g20460 pycom11g20480 pycom11g20490 pycom11g20500 pycom11g20530
rosa_chinensis RchiOBHm_Chr2g0139311 RchiOBHm_Chr2g0139351 RchiOBHm_Chr5g0026801 RchiOBHm_Chr5g0026851 RchiOBHm_Chr5g0026891 RchiOBHm_Chr5g0026911 RchiOBHm_Chr5g0036571 RchiOBHm_Chr5g0036591 RchiOBHm_Chr5g0036721 RchiOBHm_Chr5g0036741 RchiOBHm_Chr7g0222981
rosa_laevigata RLG00000002006 RLG00000019807 RLG00000032964 RLG00000032968 RLG00000032969 RLG00000033706 RLG00000033708 RLG00000033712 RLG00000033716
rosa_multiflora Rmu_co8256651.1_g000001 Rmu_co8279377.1_g000001 Rmu_co8429919.1_g000001 Rmu_co8490103.1_g000001 Rmu_sc0000774.1_g000002 Rmu_sc0002525.1_g000012 Rmu_sc0004223.1_g000008 Rmu_sc0004390.1_g000002 Rmu_sc0006059.1_g000014 Rmu_sc0006059.1_g000024 Rmu_sc0006514.1_g000020 Rmu_sc0014333.1_g000002 Rmu_ssc0000172.1_g000018 Rmu_ssc0000172.1_g000029
rosa_roxburghii Rroxscaffold_1G00044230 Rroxscaffold_1G00044260 Rroxscaffold_1G00044320 Rroxscaffold_1G00044340 Rroxscaffold_1G00052560 Rroxscaffold_1G00052570 Rroxscaffold_1G00052660 Rroxscaffold_1G00052720 Rroxscaffold_2G00105450 Rroxscaffold_2G00105460
rosa_rugosa Rorug02G0356900 Rorug02G0357000 Rorug02G0357100 Rorug02G0357200 Rorug02G0357300 Rorug02G0357400 Rorug02G0357500 Rorug02G0357600 Rorug05G0095400 Rorug05G0095500 Rorug05G0095500 Rorug05G0095600 Rorug05G0095700 Rorug05G0095800 Rorug05G0157700 Rorug05G0157800
rosa_samantha Rh2AG406800 Rh2AG406900 Rh2BG417300 Rh2CG392900 Rh2DG426200 Rh5AG189300 Rh5AG249400 Rh5AG250100 Rh5BG186300 Rh5BG186900 Rh5BG187000 Rh5BG249500 Rh5BG250600 Rh5BG250900 Rh5BG251500 Rh5BG251800 Rh5CG205500 Rh5CG206300 Rh5CG206700 Rh5CG283000 Rh5CG283300 Rh5CG283500 Rh5DG188500 Rh5DG188700 Rh5DG258700 Rh5DG258900 Rh5DG259600 Rh5DG259900 Rh7CG375800 Rh7DG352500
rosa_wichuraiana Rw2G032960 Rw2G032970 Rw2G033220 Rw2G033230 Rw5G017130 Rw5G017230 Rw5G022940 Rw5G022960 Rw5G022980 Rw7G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 104
AccBSI CCGCTC 1 cut(s) 550
AciI CCGC 4 cut(s) 145, 230, 550, 668
AclWI GGATC 3 cut(s) 152, 165, 274
AcsI RAATTY 4 cut(s) 330, 430, 485, 761
AcyI GRCGYC 1 cut(s) 573
AdeI CACNNNGTG 1 cut(s) 629
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 4 cut(s) 76, 77, 151, 226
AflIII ACRYGT 1 cut(s) 379
AgeI ACCGGT 1 cut(s) 580
AgsI TTSAA 8 cut(s) 172, 257, 329, 370, 490, 590, 602, 700
AjnI CCWGG 2 cut(s) 219, 706
AjuI GAANNNNNNNTTGG 2 cut(s) 545, 577
AluBI AGCT 3 cut(s) 47, 167, 314
AluI AGCT 3 cut(s) 47, 167, 314
Alw21I GWGCWC 1 cut(s) 316
AlwI GGATC 3 cut(s) 152, 165, 274
AoxI GGCC 2 cut(s) 3, 710
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 4 cut(s) 330, 430, 485, 761
AsiGI ACCGGT 1 cut(s) 580
Asp700I GAANNNNTTC 2 cut(s) 261, 485
AspLEI GCGC 2 cut(s) 68, 105
AspS9I GGNCC 3 cut(s) 95, 217, 710
AsuHPI GGTGA 2 cut(s) 355, 508
AvaII GGWCC 2 cut(s) 95, 217
BamHI GGATCC 1 cut(s) 157
BanII GRGCYC 1 cut(s) 316
BbsI GAAGAC 1 cut(s) 232
Bbv12I GWGCWC 1 cut(s) 316
BbvI GCAGC 1 cut(s) 22
BccI CCATC 3 cut(s) 190, 332, 725
BceAI ACGGC 1 cut(s) 697
BciT130I CCWGG 2 cut(s) 221, 708
BfaI CTAG 2 cut(s) 44, 690
BfoI RGCGCY 1 cut(s) 69
BisI GCNGC 2 cut(s) 36, 668
BlsI GCNGC 2 cut(s) 37, 669
Bme1390I CCNGG 2 cut(s) 221, 708
Bme18I GGWCC 2 cut(s) 95, 217
BmgT120I GGNCC 3 cut(s) 95, 217, 710
BmiI GGNNCC 2 cut(s) 159, 666
BmrFI CCNGG 2 cut(s) 221, 708
BmsI GCATC 2 cut(s) 4, 382
BpiI GAAGAC 1 cut(s) 232
BpuEI CTTGAG 1 cut(s) 566
BsaAI YACGTR 1 cut(s) 380
BsaHI GRCGYC 1 cut(s) 573
BsaJI CCNNGG 1 cut(s) 707
BsaWI WCCGGW 2 cut(s) 97, 580
Bsc4I CCNNNNNNNGG 4 cut(s) 76, 77, 151, 226
Bse118I RCCGGY 2 cut(s) 151, 580
Bse1I ACTGG 1 cut(s) 639
BseBI CCWGG 2 cut(s) 221, 708
BseDI CCNNGG 1 cut(s) 707
BseGI GGATG 2 cut(s) 201, 571
BseLI CCNNNNNNNGG 4 cut(s) 76, 77, 151, 226
BseMII CTCAG 4 cut(s) 128, 417, 735, 761
BseNI ACTGG 1 cut(s) 639
BseRI GAGGAG 2 cut(s) 306, 677
BseXI GCAGC 1 cut(s) 22
BseYI CCCAGC 1 cut(s) 647
BshFI GGCC 2 cut(s) 5, 712
BshTI ACCGGT 1 cut(s) 580
BsiHKAI GWGCWC 1 cut(s) 316
BsiSI CCGG 3 cut(s) 98, 152, 581
BslI CCNNNNNNNGG 4 cut(s) 76, 77, 151, 226
BsnI GGCC 2 cut(s) 5, 712
Bsp1286I GDGCHC 1 cut(s) 316
Bsp143I GATC 4 cut(s) 73, 157, 268, 279
BspACI CCGC 4 cut(s) 145, 230, 550, 668
BspANI GGCC 2 cut(s) 5, 712
BspCNI CTCAG 4 cut(s) 127, 418, 734, 760
BspLI GGNNCC 2 cut(s) 159, 666
BspPI GGATC 3 cut(s) 152, 165, 274
BsrBI CCGCTC 1 cut(s) 550
BsrFI RCCGGY 2 cut(s) 151, 580
BsrI ACTGG 1 cut(s) 639
BssAI RCCGGY 2 cut(s) 151, 580
BssECI CCNNGG 1 cut(s) 707
BssMI GATC 4 cut(s) 73, 157, 268, 279
BssNI GRCGYC 1 cut(s) 573
Bst2UI CCWGG 2 cut(s) 221, 708
Bst4CI ACNGT 2 cut(s) 188, 627
BstACI GRCGYC 1 cut(s) 573
BstAPI GCANNNNNTGC 1 cut(s) 32
BstBAI YACGTR 1 cut(s) 380
BstC8I GCNNGC 3 cut(s) 149, 232, 645
BstDEI CTNAG 6 cut(s) 114, 426, 466, 721, 747, 753
BstF5I GGATG 2 cut(s) 201, 571
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 2 cut(s) 68, 105
BstKTI GATC 4 cut(s) 76, 160, 271, 282
BstMBI GATC 4 cut(s) 73, 157, 268, 279
BstMWI GCNNNNNNNGC 5 cut(s) 23, 32, 44, 173, 653
BstNI CCWGG 2 cut(s) 221, 708
BstNSI RCATGY 2 cut(s) 647, 660
BstSCI CCNGG 2 cut(s) 219, 706
BstV1I GCAGC 1 cut(s) 22
BstV2I GAAGAC 1 cut(s) 232
BstX2I RGATCY 2 cut(s) 157, 279
BstYI RGATCY 2 cut(s) 157, 279
BsuRI GGCC 2 cut(s) 5, 712
BtgZI GCGATG 1 cut(s) 249
BtsCI GGATG 2 cut(s) 201, 571
BtsI GCAGTG 1 cut(s) 768
BtsIMutI CAGTG 2 cut(s) 632, 768
Cac8I GCNNGC 3 cut(s) 149, 232, 645
CfoI GCGC 2 cut(s) 68, 105
Cfr10I RCCGGY 2 cut(s) 151, 580
Cfr13I GGNCC 3 cut(s) 95, 217, 710
CseI GACGC 1 cut(s) 562
Csp6I GTAC 1 cut(s) 189
CspAI ACCGGT 1 cut(s) 580
CspCI CAANNNNNGTGG 4 cut(s) 173, 208, 478, 513
CviAII CATG 4 cut(s) 356, 521, 644, 657
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 6 cut(s) 114, 426, 466, 721, 747, 753
DpnI GATC 4 cut(s) 75, 159, 270, 281
DpnII GATC 4 cut(s) 73, 157, 268, 279
DraIII CACNNNGTG 1 cut(s) 629
Ecl136II GAGCTC 1 cut(s) 314
Eco24I GRGCYC 1 cut(s) 316
Eco32I GATATC 1 cut(s) 526
Eco47I GGWCC 2 cut(s) 95, 217
Eco53kI GAGCTC 1 cut(s) 314
EcoICRI GAGCTC 1 cut(s) 314
EcoRI GAATTC 2 cut(s) 485, 761
EcoRII CCWGG 2 cut(s) 219, 706
EcoRV GATATC 1 cut(s) 526
EcoT38I GRGCYC 1 cut(s) 316
FaeI CATG 4 cut(s) 359, 524, 647, 660
FaiI YATR 8 cut(s) 336, 357, 417, 474, 522, 645, 658, 672
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FatI CATG 4 cut(s) 355, 520, 643, 656
FauI CCCGC 2 cut(s) 152, 223
Fnu4HI GCNGC 2 cut(s) 36, 668
FokI GGATG 2 cut(s) 208, 578
FriOI GRGCYC 1 cut(s) 316
Fsp4HI GCNGC 2 cut(s) 36, 668
FspBI CTAG 2 cut(s) 44, 690
FspI TGCGCA 1 cut(s) 104
GlaI GCGC 2 cut(s) 67, 104
GluI GCNGC 2 cut(s) 36, 668
GsaI CCCAGC 1 cut(s) 651
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 2 cut(s) 5, 712
HapII CCGG 3 cut(s) 98, 152, 581
HgaI GACGC 1 cut(s) 562
HhaI GCGC 2 cut(s) 68, 105
Hin1I GRCGYC 1 cut(s) 573
Hin1II CATG 4 cut(s) 359, 524, 647, 660
Hin6I GCGC 2 cut(s) 66, 103
HinP1I GCGC 2 cut(s) 66, 103
HincII GTYRAC 1 cut(s) 820
HindII GTYRAC 1 cut(s) 820
HindIII AAGCTT 1 cut(s) 165
HinfI GANTC 4 cut(s) 136, 257, 403, 502
HpaII CCGG 3 cut(s) 98, 152, 581
HphI GGTGA 2 cut(s) 355, 508
Hpy166II GTNNAC 3 cut(s) 623, 632, 820
Hpy188I TCNGA 6 cut(s) 141, 273, 507, 609, 750, 853
Hpy188III TCNNGA 3 cut(s) 266, 490, 723
Hpy8I GTNNAC 3 cut(s) 623, 632, 820
Hpy99I CGWCG 1 cut(s) 578
HpyAV CCTTC 2 cut(s) 475, 487
HpyCH4III ACNGT 2 cut(s) 188, 627
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 2 cut(s) 355, 656
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 32, 44, 173, 653
HpyF3I CTNAG 6 cut(s) 114, 426, 466, 721, 747, 753
HpySE526I ACGT 1 cut(s) 379
Hsp92I GRCGYC 1 cut(s) 573
Hsp92II CATG 4 cut(s) 359, 524, 647, 660
HspAI GCGC 2 cut(s) 66, 103
Kzo9I GATC 4 cut(s) 73, 157, 268, 279
LmnI GCTCC 2 cut(s) 319, 664
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 2 cut(s) 4, 382
MaeI CTAG 2 cut(s) 44, 690
MaeII ACGT 1 cut(s) 379
MaeIII GTNAC 2 cut(s) 19, 637
MalI GATC 4 cut(s) 75, 159, 270, 281
MbiI CCGCTC 1 cut(s) 550
MboI GATC 4 cut(s) 73, 157, 268, 279
MboII GAAGA 6 cut(s) 232, 431, 505, 565, 757, 808
MflI RGATCY 2 cut(s) 157, 279
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 6 cut(s) 330, 365, 430, 485, 590, 761
MlyI GAGTC 1 cut(s) 130
MnlI CCTC 8 cut(s) 16, 284, 417, 655, 719, 787, 843, 847
MroXI GAANNNNTTC 2 cut(s) 261, 485
MseI TTAA 1 cut(s) 213
MslI CAYNNNNRTG 1 cut(s) 378
MspI CCGG 3 cut(s) 98, 152, 581
MspR9I CCNGG 2 cut(s) 221, 708
MvaI CCWGG 2 cut(s) 221, 708
MwoI GCNNNNNNNGC 5 cut(s) 23, 32, 44, 173, 653
NdeII GATC 4 cut(s) 73, 157, 268, 279
NlaIII CATG 4 cut(s) 359, 524, 647, 660
NlaIV GGNNCC 2 cut(s) 159, 666
NmuCI GTSAC 2 cut(s) 19, 637
NsbI TGCGCA 1 cut(s) 104
NspI RCATGY 2 cut(s) 647, 660
PaeI GCATGC 1 cut(s) 647
PdmI GAANNNNTTC 2 cut(s) 261, 485
PfeI GAWTC 3 cut(s) 257, 403, 502
PfoI TCCNGGA 1 cut(s) 219
PinAI ACCGGT 1 cut(s) 580
PkrI GCNGC 2 cut(s) 37, 669
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
Ppu21I YACGTR 1 cut(s) 380
Psp124BI GAGCTC 1 cut(s) 316
Psp6I CCWGG 2 cut(s) 219, 706
PspFI CCCAGC 1 cut(s) 647
PspGI CCWGG 2 cut(s) 219, 706
PspN4I GGNNCC 2 cut(s) 159, 666
PspPI GGNCC 3 cut(s) 95, 217, 710
PsuI RGATCY 2 cut(s) 157, 279
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
RseI CAYNNNNRTG 1 cut(s) 378
SacI GAGCTC 1 cut(s) 316
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 2 cut(s) 36, 668
Sau3AI GATC 4 cut(s) 73, 157, 268, 279
Sau96I GGNCC 3 cut(s) 95, 217, 710
SchI GAGTC 1 cut(s) 130
ScrFI CCNGG 2 cut(s) 221, 708
SduI GDGCHC 1 cut(s) 316
SetI ASST 7 cut(s) 49, 169, 219, 316, 382, 427, 809
SfaNI GCATC 2 cut(s) 4, 382
SinI GGWCC 2 cut(s) 95, 217
SmiMI CAYNNNNRTG 1 cut(s) 378
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
SphI GCATGC 1 cut(s) 647
Sse9I AATT 6 cut(s) 330, 365, 430, 485, 590, 761
SsiI CCGC 4 cut(s) 145, 230, 550, 668
SspMI CTAG 2 cut(s) 44, 690
SstI GAGCTC 1 cut(s) 316
StyD4I CCNGG 2 cut(s) 219, 706
TaaI ACNGT 2 cut(s) 188, 627
TaiI ACGT 1 cut(s) 382
TaqI TCGA 1 cut(s) 576
TasI AATT 6 cut(s) 330, 365, 430, 485, 590, 761
TauI GCSGC 1 cut(s) 670
TfiI GAWTC 3 cut(s) 257, 403, 502
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 2 cut(s) 632, 775
TseFI GTSAC 2 cut(s) 19, 637
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 2 cut(s) 19, 637
TspDTI ATGAA 2 cut(s) 372, 432
TspGWI ACGGA 1 cut(s) 672
TspRI CASTG 2 cut(s) 632, 775
VpaK11BI GGWCC 2 cut(s) 95, 217
XapI RAATTY 4 cut(s) 330, 430, 485, 761
XceI RCATGY 2 cut(s) 647, 660
XmnI GAANNNNTTC 2 cut(s) 261, 485
XspI CTAG 2 cut(s) 44, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.