Rorug02G0357000

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
45094018 .. 45095357
1340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0357000.1

Sequence Viewer

Length: 1260 bp
ATGGCTGACAAAAGTACCCAAAAATCTGAAGTAGATAGTAACAAGGCTGATGAACAACAACGCCCGAGGCTGACTTCTACAAAGAAATGTAAATGTCCATTCTTATTAAAAGCCTTTAATATTGGTAGGGATGAGTGGGTACTTGAGGTTGCTTGCGGAATCCACAATCATGTTGCCCCATCATATCTAGAAGGTCATTCCTATGCAGGGCGACTATCTAAAGAAGAACATGAGTTGTTGGTGGATATGTCTAAGCGTTTAATGAGACCCAAGGATATATTGACTACCATAAAGAGCCGAGATCCAAGTAATACATCAACGATGAGAACTATATACAATGCTAGGTATTTTGCTAGGAATATCGCTAGAGTAGGCAGAACTCAAATGCAACAATTACGAAAGAATTTGCGCGATCATCAATATATTGAGCATCATAGAAGCGAAGATCACGTGGTCACTGATTTGTTTTGGTGTCATCCATTCAGTCTTCAAATGCTACGTACATTCCCACATGTACTTATCATGGATTGCACCTATAAGACAAACATGTATCGTTTTCCACTTTTTGAGATTGTGGGTATTACATGCACTGAGCAAACTTTCAATGTTGCATTTGTTTACATGTCAAAGGAGGCAGAAGATAATTACAGATGGGCACTGAGTAGGTTAAGAACACTTATGGATGAGGATTCTATGCCTGGAGTAATTGTCACTGATCGGGAATTAGCACTTATGAAAGCCACTGAAAATGTCTTTCCCGATACTCATCAGATTTTATGTAAGTGGCACATTGGTAAGAATGTGATGAGAAAATGCAAAGGAAAATTCACAACAAAAGAAGGTTGGGAAGCATTTAATAATGATTGGCATAGCTTGGTGGATTGTAGCACTGAGGATGAGTATGTACATAACCTTATAGCTTTTGAATCAAAATACTTTGCATTTCCTGAGGAGATAAATTATTTGAAGACCAATTGGTTGAACAAGTATAAGGAAATGTTCATTGCAGCATGGACAAACAACTACATGCATCTTGGTGCAAAGACTTCGAATCGGGCCGAGAGTGTACATGCAAAGCTCAAGCGAGAACTTAGATCTTCCCAACTTGACTTCAATGTATCATGGGAGCACATCCACTCATTATTGTGTTTGCATCATACTGAAGTTAAGGCTTCATTTGAAAAAAGTCGATGTTTTGTGCAACATGAGTTCAAGCATGCATACTTGAGAGAGTTGATAGGATTTCCATTGCGGCATTGA

Protein Analysis

419

Amino Acids

49.51

Weight (kDa)

8.72

Isoelectric Point (pI)

49.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 148 - 257 3.9e-12 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 172 - 267 8.5e-27 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27300
fragaria_vesca FvH4_3g15930 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g21350 FvH4_3g21400 FvH4_3g21400 FvH4_6g12332
malus_domestica MD02G1167100.v1.1 MD02G1167200.v1.1 MD03G1185600.v1.1 MD05G1213900.v1.1 MD05G1214100.v1.1 MD05G1214200.v1.1 MD05G1214700.v1.1 MD05G1216300.v1.1 MD05G1216800.v1.1 MD05G1217300.v1.1 MD05G1218000.v1.1 MD11G1231100.v1.1 MD11G1231200.v1.1 MD11G1231400.v1.1 MD11G1231500.v1.1 MD11G1232400.v1.1 MD11G1232500.v1.1
prunus_persica Prupe.4G142300_v2.0.a1 Prupe.4G142400_v2.0.a1 Prupe.4G142500_v2.0.a1 Prupe.4G142600_v2.0.a1 Prupe.4G142800_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195100_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195500_v2.0.a1 Prupe.4G195700_v2.0.a1 Prupe.4G195900_v2.0.a1
pyrus_communis pycom03g16540 pycom05g19920 pycom11g20460 pycom11g20480 pycom11g20490 pycom11g20500 pycom11g20530
rosa_chinensis RchiOBHm_Chr2g0139311 RchiOBHm_Chr2g0139351 RchiOBHm_Chr5g0026801 RchiOBHm_Chr5g0026851 RchiOBHm_Chr5g0026891 RchiOBHm_Chr5g0026911 RchiOBHm_Chr5g0036571 RchiOBHm_Chr5g0036591 RchiOBHm_Chr5g0036721 RchiOBHm_Chr5g0036741 RchiOBHm_Chr7g0222981
rosa_laevigata RLG00000002006 RLG00000019807 RLG00000032964 RLG00000032968 RLG00000032969 RLG00000033706 RLG00000033708 RLG00000033712 RLG00000033716
rosa_multiflora Rmu_co8256651.1_g000001 Rmu_co8279377.1_g000001 Rmu_co8429919.1_g000001 Rmu_co8490103.1_g000001 Rmu_sc0000774.1_g000002 Rmu_sc0002525.1_g000012 Rmu_sc0004223.1_g000008 Rmu_sc0004390.1_g000002 Rmu_sc0006059.1_g000014 Rmu_sc0006059.1_g000024 Rmu_sc0006514.1_g000020 Rmu_sc0014333.1_g000002 Rmu_ssc0000172.1_g000018 Rmu_ssc0000172.1_g000029
rosa_roxburghii Rroxscaffold_1G00044230 Rroxscaffold_1G00044260 Rroxscaffold_1G00044320 Rroxscaffold_1G00044340 Rroxscaffold_1G00052560 Rroxscaffold_1G00052570 Rroxscaffold_1G00052660 Rroxscaffold_1G00052720 Rroxscaffold_2G00105450 Rroxscaffold_2G00105460
rosa_rugosa Rorug02G0356900 Rorug02G0357000 Rorug02G0357100 Rorug02G0357200 Rorug02G0357300 Rorug02G0357400 Rorug02G0357500 Rorug02G0357600 Rorug05G0095400 Rorug05G0095500 Rorug05G0095500 Rorug05G0095600 Rorug05G0095700 Rorug05G0095800 Rorug05G0157700 Rorug05G0157800
rosa_samantha Rh2AG406800 Rh2AG406900 Rh2BG417300 Rh2CG392900 Rh2DG426200 Rh5AG189300 Rh5AG249400 Rh5AG250100 Rh5BG186300 Rh5BG186900 Rh5BG187000 Rh5BG249500 Rh5BG250600 Rh5BG250900 Rh5BG251500 Rh5BG251800 Rh5CG205500 Rh5CG206300 Rh5CG206700 Rh5CG283000 Rh5CG283300 Rh5CG283500 Rh5DG188500 Rh5DG188700 Rh5DG258700 Rh5DG258900 Rh5DG259600 Rh5DG259900 Rh7CG375800 Rh7DG352500
rosa_wichuraiana Rw2G032960 Rw2G032970 Rw2G033220 Rw2G033230 Rw5G017130 Rw5G017230 Rw5G022940 Rw5G022960 Rw5G022980 Rw7G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 411
AciI CCGC 2 cut(s) 156, 1252
AclWI GGATC 1 cut(s) 296
AcsI RAATTY 2 cut(s) 403, 824
AcuI CTGAAG 2 cut(s) 48, 1182
AcvI CACGTG 1 cut(s) 451
AfaI GTAC 6 cut(s) 16, 141, 502, 516, 906, 1068
AfiI CCNNNNNNNGG 1 cut(s) 207
AflIII ACRYGT 3 cut(s) 511, 546, 621
AgsI TTSAA 8 cut(s) 491, 604, 926, 967, 982, 1114, 1181, 1213
AjnI CCWGG 1 cut(s) 697
AluBI AGCT 3 cut(s) 873, 920, 1078
AluI AGCT 3 cut(s) 873, 920, 1078
Alw21I GWGCWC 1 cut(s) 1131
Alw26I GTCTC 1 cut(s) 259
AlwI GGATC 1 cut(s) 296
Ama87I CYCGRG 1 cut(s) 64
AoxI GGCC 1 cut(s) 1056
ApeKI GCWGC 1 cut(s) 1007
ApoI RAATTY 2 cut(s) 403, 824
AspLEI GCGC 1 cut(s) 411
AspS9I GGNCC 1 cut(s) 1056
AsuII TTCGAA 1 cut(s) 1049
AvaI CYCGRG 1 cut(s) 64
AxyI CCTNAGG 1 cut(s) 948
BaeGI GKGCMC 1 cut(s) 658
BaeI ACNNNNGTAYC 1 cut(s) 31
BbrPI CACGTG 1 cut(s) 451
BbsI GAAGAC 2 cut(s) 479, 974
Bbv12I GWGCWC 1 cut(s) 1131
BbvI GCAGC 1 cut(s) 1019
BccI CCATC 2 cut(s) 187, 645
BcgI CGANNNNNNTGC 2 cut(s) 1029, 1063
BciT130I CCWGG 1 cut(s) 699
BcoDI GTCTC 1 cut(s) 259
BfaI CTAG 4 cut(s) 188, 342, 354, 366
BglII AGATCT 1 cut(s) 1094
BisI GCNGC 2 cut(s) 1008, 1253
BlsI GCNGC 2 cut(s) 1009, 1254
Bme1390I CCNGG 1 cut(s) 699
BmeT110I CYCGRG 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 1056
BmrFI CCNGG 1 cut(s) 699
BmsI GCATC 3 cut(s) 439, 1039, 1162
BpiI GAAGAC 2 cut(s) 479, 974
BpmI CTGGAG 1 cut(s) 720
Bpu14I TTCGAA 1 cut(s) 1049
BpuEI CTTGAG 3 cut(s) 164, 1064, 1246
BsaAI YACGTR 2 cut(s) 451, 500
BsaBI GATNNNNATC 1 cut(s) 765
BsaI GGTCTC 1 cut(s) 259
BsaJI CCNNGG 2 cut(s) 65, 270
BsaXI ACNNNNNCTCC 2 cut(s) 693, 723
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse21I CCTNAGG 1 cut(s) 948
Bse3DI GCAATG 2 cut(s) 1002, 1247
Bse8I GATNNNNATC 1 cut(s) 765
BseBI CCWGG 1 cut(s) 699
BseDI CCNNGG 2 cut(s) 65, 270
BseGI GGATG 5 cut(s) 136, 475, 688, 901, 1131
BseJI GATNNNNATC 1 cut(s) 765
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMI GCAATG 2 cut(s) 1002, 1247
BseMII CTCAG 4 cut(s) 582, 650, 882, 939
BseRI GAGGAG 1 cut(s) 965
BseSI GKGCMC 1 cut(s) 658
BseXI GCAGC 1 cut(s) 1019
Bsh1236I CGCG 1 cut(s) 411
BshFI GGCC 1 cut(s) 1058
BsiHKAI GWGCWC 1 cut(s) 1131
BsiHKCI CYCGRG 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 207
BsmAI GTCTC 1 cut(s) 259
BsnI GGCC 1 cut(s) 1058
Bso31I GGTCTC 1 cut(s) 259
BsoBI CYCGRG 1 cut(s) 64
Bsp119I TTCGAA 1 cut(s) 1049
Bsp1286I GDGCHC 2 cut(s) 658, 1131
Bsp1407I TGTACA 2 cut(s) 904, 1066
Bsp143I GATC 5 cut(s) 301, 412, 445, 715, 1094
BspACI CCGC 2 cut(s) 156, 1252
BspANI GGCC 1 cut(s) 1058
BspCNI CTCAG 4 cut(s) 583, 651, 883, 940
BspFNI CGCG 1 cut(s) 411
BspPI GGATC 1 cut(s) 296
BspT104I TTCGAA 1 cut(s) 1049
BspTNI GGTCTC 1 cut(s) 259
BsrDI GCAATG 2 cut(s) 1002, 1247
BsrGI TGTACA 2 cut(s) 904, 1066
BssECI CCNNGG 2 cut(s) 65, 270
BssMI GATC 5 cut(s) 301, 412, 445, 715, 1094
BssT1I CCWWGG 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 699
BstAUI TGTACA 2 cut(s) 904, 1066
BstBAI YACGTR 2 cut(s) 451, 500
BstBI TTCGAA 1 cut(s) 1049
BstC8I GCNNGC 2 cut(s) 154, 1218
BstDEI CTNAG 6 cut(s) 252, 591, 659, 891, 948, 1091
BstF5I GGATG 5 cut(s) 136, 475, 688, 901, 1131
BstFNI CGCG 1 cut(s) 411
BstHHI GCGC 1 cut(s) 411
BstKTI GATC 5 cut(s) 304, 415, 448, 718, 1097
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 5 cut(s) 301, 412, 445, 715, 1094
BstNI CCWGG 1 cut(s) 699
BstNSI RCATGY 7 cut(s) 515, 550, 588, 625, 1030, 1073, 1220
BstSCI CCNGG 1 cut(s) 697
BstSLI GKGCMC 1 cut(s) 658
BstSNI TACGTA 1 cut(s) 500
BstUI CGCG 1 cut(s) 411
BstV1I GCAGC 1 cut(s) 1019
BstV2I GAAGAC 2 cut(s) 479, 974
BstX2I RGATCY 2 cut(s) 301, 1094
BstYI RGATCY 2 cut(s) 301, 1094
Bsu36I CCTNAGG 1 cut(s) 948
BsuRI GGCC 1 cut(s) 1058
BtsCI GGATG 5 cut(s) 136, 475, 688, 901, 1131
BtsIMutI CAGTG 6 cut(s) 456, 588, 656, 711, 741, 888
Cac8I GCNNGC 2 cut(s) 154, 1218
CfoI GCGC 1 cut(s) 411
Cfr13I GGNCC 1 cut(s) 1056
Csp6I GTAC 6 cut(s) 15, 140, 501, 515, 905, 1067
CviQI GTAC 6 cut(s) 15, 140, 501, 515, 905, 1067
DdeI CTNAG 6 cut(s) 252, 591, 659, 891, 948, 1091
DpnI GATC 5 cut(s) 303, 414, 447, 717, 1096
DpnII GATC 5 cut(s) 301, 412, 445, 715, 1094
Eco105I TACGTA 1 cut(s) 500
Eco130I CCWWGG 1 cut(s) 270
Eco31I GGTCTC 1 cut(s) 259
Eco57I CTGAAG 2 cut(s) 48, 1182
Eco72I CACGTG 1 cut(s) 451
Eco81I CCTNAGG 1 cut(s) 948
Eco88I CYCGRG 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 697
EcoT14I CCWWGG 1 cut(s) 270
EcoT22I ATGCAT 2 cut(s) 1032, 1222
ErhI CCWWGG 1 cut(s) 270
Fnu4HI GCNGC 2 cut(s) 1008, 1253
FokI GGATG 5 cut(s) 143, 462, 695, 908, 1118
Fsp4HI GCNGC 2 cut(s) 1008, 1253
FspBI CTAG 4 cut(s) 188, 342, 354, 366
GlaI GCGC 1 cut(s) 410
GluI GCNGC 2 cut(s) 1008, 1253
GsuI CTGGAG 1 cut(s) 720
HaeIII GGCC 1 cut(s) 1058
HhaI GCGC 1 cut(s) 411
Hin6I GCGC 1 cut(s) 409
HinP1I GCGC 1 cut(s) 409
HinfI GANTC 4 cut(s) 159, 689, 926, 1051
Hpy166II GTNNAC 2 cut(s) 619, 1067
Hpy188I TCNGA 2 cut(s) 28, 771
Hpy188III TCNNGA 4 cut(s) 188, 719, 758, 947
Hpy8I GTNNAC 2 cut(s) 619, 1067
HpyAV CCTTC 2 cut(s) 185, 833
HpyCH4IV ACGT 2 cut(s) 450, 499
HpyF3I CTNAG 6 cut(s) 252, 591, 659, 891, 948, 1091
HpySE526I ACGT 2 cut(s) 450, 499
HspAI GCGC 1 cut(s) 409
Kzo9I GATC 5 cut(s) 301, 412, 445, 715, 1094
LmnI GCTCC 1 cut(s) 1126
LpnPI CCDG 4 cut(s) 192, 684, 711, 960
Lsp1109I GCAGC 1 cut(s) 1019
LweI GCATC 3 cut(s) 439, 1039, 1162
MaeI CTAG 4 cut(s) 188, 342, 354, 366
MaeII ACGT 2 cut(s) 450, 499
MaeIII GTNAC 3 cut(s) 38, 454, 709
MalI GATC 5 cut(s) 303, 414, 447, 717, 1096
MboI GATC 5 cut(s) 301, 412, 445, 715, 1094
MboII GAAGA 6 cut(s) 236, 455, 479, 650, 979, 1089
MfeI CAATTG 1 cut(s) 973
MflI RGATCY 2 cut(s) 301, 1094
MhlI GDGCHC 2 cut(s) 658, 1131
MluCI AATT 8 cut(s) 392, 403, 643, 705, 722, 824, 958, 973
MnlI CCTC 6 cut(s) 60, 139, 625, 679, 886, 943
Mph1103I ATGCAT 2 cut(s) 1032, 1222
MseI TTAA 6 cut(s) 107, 117, 260, 668, 855, 1167
MslI CAYNNNNRTG 4 cut(s) 168, 201, 1035, 1144
MspR9I CCNGG 1 cut(s) 699
MunI CAATTG 1 cut(s) 973
MvaI CCWGG 1 cut(s) 699
MvnI CGCG 1 cut(s) 411
NdeII GATC 5 cut(s) 301, 412, 445, 715, 1094
NmeAIII GCCGAG 2 cut(s) 323, 1084
NmuCI GTSAC 2 cut(s) 454, 709
NsiI ATGCAT 2 cut(s) 1032, 1222
NspI RCATGY 7 cut(s) 515, 550, 588, 625, 1030, 1073, 1220
NspV TTCGAA 1 cut(s) 1049
PaeI GCATGC 1 cut(s) 1220
PciI ACATGT 3 cut(s) 511, 546, 621
PfeI GAWTC 4 cut(s) 159, 689, 926, 1051
PkrI GCNGC 2 cut(s) 1009, 1254
PmaCI CACGTG 1 cut(s) 451
PmlI CACGTG 1 cut(s) 451
Ppu21I YACGTR 2 cut(s) 451, 500
PscI ACATGT 3 cut(s) 511, 546, 621
Psp6I CCWGG 1 cut(s) 697
PspCI CACGTG 1 cut(s) 451
PspGI CCWGG 1 cut(s) 697
PspPI GGNCC 1 cut(s) 1056
PsuI RGATCY 2 cut(s) 301, 1094
RsaI GTAC 6 cut(s) 16, 141, 502, 516, 906, 1068
RsaNI GTAC 6 cut(s) 15, 140, 501, 515, 905, 1067
RseI CAYNNNNRTG 4 cut(s) 168, 201, 1035, 1144
SaqAI TTAA 6 cut(s) 107, 117, 260, 668, 855, 1167
SatI GCNGC 2 cut(s) 1008, 1253
Sau3AI GATC 5 cut(s) 301, 412, 445, 715, 1094
Sau96I GGNCC 1 cut(s) 1056
ScrFI CCNGG 1 cut(s) 699
SduI GDGCHC 2 cut(s) 658, 1131
SfaNI GCATC 3 cut(s) 439, 1039, 1162
SfuI TTCGAA 1 cut(s) 1049
SmiMI CAYNNNNRTG 4 cut(s) 168, 201, 1035, 1144
SmlI CTYRAG 3 cut(s) 143, 1079, 1225
SmoI CTYRAG 3 cut(s) 143, 1079, 1225
SnaBI TACGTA 1 cut(s) 500
SphI GCATGC 1 cut(s) 1220
Sse9I AATT 8 cut(s) 392, 403, 643, 705, 722, 824, 958, 973
SsiI CCGC 2 cut(s) 156, 1252
SspI AATATT 1 cut(s) 121
SspMI CTAG 4 cut(s) 188, 342, 354, 366
StyD4I CCNGG 1 cut(s) 697
StyI CCWWGG 1 cut(s) 270
TaiI ACGT 2 cut(s) 453, 502
TaqI TCGA 2 cut(s) 1049, 1189
TasI AATT 8 cut(s) 392, 403, 643, 705, 722, 824, 958, 973
TatI WGTACW 3 cut(s) 514, 904, 1066
TauI GCSGC 1 cut(s) 1255
TfiI GAWTC 4 cut(s) 159, 689, 926, 1051
Tru1I TTAA 6 cut(s) 107, 117, 260, 668, 855, 1167
Tru9I TTAA 6 cut(s) 107, 117, 260, 668, 855, 1167
TscAI CASTG 6 cut(s) 463, 595, 663, 718, 748, 895
TseFI GTSAC 2 cut(s) 454, 709
TseI GCWGC 1 cut(s) 1007
Tsp45I GTSAC 2 cut(s) 454, 709
TspDTI ATGAA 4 cut(s) 66, 749, 991, 1164
TspRI CASTG 6 cut(s) 463, 595, 663, 718, 748, 895
XapI RAATTY 2 cut(s) 403, 824
XbaI TCTAGA 1 cut(s) 187
XceI RCATGY 7 cut(s) 515, 550, 588, 625, 1030, 1073, 1220
XspI CTAG 4 cut(s) 188, 342, 354, 366
Zsp2I ATGCAT 2 cut(s) 1032, 1222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.