Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004390.1

Orthogroup ID

OG0000207

Physical Location & Seq

Genomic Coordinates Reverse (-)

7748 .. 10781

Gene Structure 3034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004390.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2349 bp

atgggtgatctttgttttgtggtgtttagtactggtttgctctttctgttgttcacaggttcgtttgcagttgacagcatcagtcactcgcagtctatccgtgataacggcagcaccttggtttcaagtgatggaagctttgagctggggttcttcagtccaggtaactcgaaaaatcgttacttgggaatttggtacaaaaccatccctgttaaaactgttgtttgggttgcaaatcgatgcaaaccgattgatgactcatccggtgtgctgatgataaacagcacaggatatcttgtgctgttgggtcagaataagagtgttgtttggtggacaagtttatctaagtatgcacagagtacaatgatacagctattagattctggaaattttgtagtaagagatgtgacagatggaaagtcattgtggcaaagcttcgattatccttctcatacattgttaccggaaatgaagatgggatgggactttaggacaggtcttaaaaggggattatcagcatggaaaaattcagaagacccatgtccgggggaattcacttgtgggattgaaatggaaactcatgcataccctgaggtatgtttccggaaaggtggtctaaaatattatcgttctggcccatggaatggcctagcattcagtggtgcatcagcactaaggcctaatccaatttttagtttcgactttgtgtataatgatgatgaaatgtactacatgtacaaacttcgaagcaaatctgtaatttcaatcatggtcttaaatggaacaacgagcacacgcgatcgccttacatggattgaagcagagcaaacttggagggtctatgcatcagtacctagagatttctgtgatcaatataatctctgtggagcaaatgcaaattgtatcattagtgacaatccagtatgtcaatgtctacaaggattcatgcctaagtcaccagagaaatggaattcgacagactggtcacttggatgtatgcgcaagaaacccctaagctgccaggaaagtgataaagacaggtttgtcaagttcactaatttgaaattgccggatgctacacattcttgggtggacagaagtatgaacatcaaggaatgcagagccaaatgcttgaacaactgttcctgtatggcttatacaagcttggatatcagagcaggaggttctggctgcgccattttgtttggtgatctactagatatcagaaagcttccggatgctggccaggatctatacattcgaatgtcggcttcagagatagatgatgatggtaaagtgaagacaggaattatagttgctgttgtgataggcgcagtgttttcaggaatgctcttagttggctactacgtctaccgaagcaggaccaaattgaaagagacagaaaaacgagaagaaaatctgaagaaaaaaggggtacaaaaggaggacctggagctcccgatcttcaacatgagcacaatagctcgtgcaacagataacttttcagatgatatgaagcttatgaatgaaattataatgattgccaaacttcagcaccgaaatcttgtaaagattcttggttgttgtgtgcaagaagagaaaatgctcatgtacgaatacatgtccaacggaagcctggactacttcatttttgatcaaacaagggcagtactgttagattggcctaaacgtttccacatcatttgtggaattgctcggggtctcctctatctccaccaagattccaggctaaggattatacatagagatctaaaaccaagtaatgttctccttgatgatgaaatgaatcctaaaatttcagactttggcttggctagaatattaactggaggagatcagactggaagaaatactaagagagtggtcgggacatatggctacatggcacctgaatatgctgctgatgggctattttctgtgaaatccgatgtctttagctttggtatattggtgctggagattataagtggaaggagaaacaagggattttatgatccagacaacagccataatcttattggaaatgcttggagattgtggaatgaaggaaggcctttagaattgattgattcatggttagagagcgcatgtaatctatcggaagtggaagtgttacgttgcattcaagttggtcttttgtgcgtgcaacatcatcctgaggatcggccaagcatggcatcggtggttataatgttgggaagtgatattgcattggctcaacctaaacaacctggtttctttatggaaaaggaacacaaagcaagccctgatataggtaatgaatcatcaacctatgaagtatccatttcgcttttggaagctcggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

782

Amino Acids

88.2

Weight (kDa)

6.5

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27300
fragaria_vesca	FvH4_3g15930 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g21350 FvH4_3g21400 FvH4_3g21400 FvH4_6g12332
malus_domestica	MD02G1167100.v1.1 MD02G1167200.v1.1 MD03G1185600.v1.1 MD05G1213900.v1.1 MD05G1214100.v1.1 MD05G1214200.v1.1 MD05G1214700.v1.1 MD05G1216300.v1.1 MD05G1216800.v1.1 MD05G1217300.v1.1 MD05G1218000.v1.1 MD11G1231100.v1.1 MD11G1231200.v1.1 MD11G1231400.v1.1 MD11G1231500.v1.1 MD11G1232400.v1.1 MD11G1232500.v1.1
prunus_persica	Prupe.4G142300_v2.0.a1 Prupe.4G142400_v2.0.a1 Prupe.4G142500_v2.0.a1 Prupe.4G142600_v2.0.a1 Prupe.4G142800_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195100_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195500_v2.0.a1 Prupe.4G195700_v2.0.a1 Prupe.4G195900_v2.0.a1
pyrus_communis	pycom03g16540 pycom05g19920 pycom11g20460 pycom11g20480 pycom11g20490 pycom11g20500 pycom11g20530
rosa_chinensis	RchiOBHm_Chr2g0139311 RchiOBHm_Chr2g0139351 RchiOBHm_Chr5g0026801 RchiOBHm_Chr5g0026851 RchiOBHm_Chr5g0026891 RchiOBHm_Chr5g0026911 RchiOBHm_Chr5g0036571 RchiOBHm_Chr5g0036591 RchiOBHm_Chr5g0036721 RchiOBHm_Chr5g0036741 RchiOBHm_Chr7g0222981
rosa_laevigata	RLG00000002006 RLG00000019807 RLG00000032964 RLG00000032968 RLG00000032969 RLG00000033706 RLG00000033708 RLG00000033712 RLG00000033716
rosa_multiflora	Rmu_co8256651.1_g000001 Rmu_co8279377.1_g000001 Rmu_co8429919.1_g000001 Rmu_co8490103.1_g000001 Rmu_sc0000774.1_g000002 Rmu_sc0002525.1_g000012 Rmu_sc0004223.1_g000008 Rmu_sc0004390.1_g000002 Rmu_sc0006059.1_g000014 Rmu_sc0006059.1_g000024 Rmu_sc0006514.1_g000020 Rmu_sc0014333.1_g000002 Rmu_ssc0000172.1_g000018 Rmu_ssc0000172.1_g000029
rosa_roxburghii	Rroxscaffold_1G00044230 Rroxscaffold_1G00044260 Rroxscaffold_1G00044320 Rroxscaffold_1G00044340 Rroxscaffold_1G00052560 Rroxscaffold_1G00052570 Rroxscaffold_1G00052660 Rroxscaffold_1G00052720 Rroxscaffold_2G00105450 Rroxscaffold_2G00105460
rosa_rugosa	Rorug02G0356900 Rorug02G0357000 Rorug02G0357100 Rorug02G0357200 Rorug02G0357300 Rorug02G0357400 Rorug02G0357500 Rorug02G0357600 Rorug05G0095400 Rorug05G0095500 Rorug05G0095500 Rorug05G0095600 Rorug05G0095700 Rorug05G0095800 Rorug05G0157700 Rorug05G0157800
rosa_samantha	Rh2AG406800 Rh2AG406900 Rh2BG417300 Rh2CG392900 Rh2DG426200 Rh5AG189300 Rh5AG249400 Rh5AG250100 Rh5BG186300 Rh5BG186900 Rh5BG187000 Rh5BG249500 Rh5BG250600 Rh5BG250900 Rh5BG251500 Rh5BG251800 Rh5CG205500 Rh5CG206300 Rh5CG206700 Rh5CG283000 Rh5CG283300 Rh5CG283500 Rh5DG188500 Rh5DG188700 Rh5DG258700 Rh5DG258900 Rh5DG259600 Rh5DG259900 Rh7CG375800 Rh7DG352500
rosa_wichuraiana	Rw2G032960 Rw2G032970 Rw2G033220 Rw2G033230 Rw5G017130 Rw5G017230 Rw5G022940 Rw5G022960 Rw5G022980 Rw7G030420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1535, 1985, 2210
AasI	GACNNNNNNGTC	2 cut(s)	982, 1043
Acc16I	TGCGCA	1 cut(s)	1001
AccB1I	GGYRCC	1 cut(s)	1906
AccB7I	CCANNNNNTGG	1 cut(s)	644
AccI	GTMKAC	2 cut(s)	934, 1371
AccII	CGCG	1 cut(s)	798
AccIII	TCCGGA	2 cut(s)	603, 1234
AclI	AACGTT	1 cut(s)	1690
AclWI	GGATC	3 cut(s)	1257, 2009, 2190
AcoI	YGGCCR	2 cut(s)	1243, 2186
AcsI	RAATTY	6 cut(s)	189, 388, 526, 551, 970, 1815
AcuI	CTGAAG	4 cut(s)	139, 1257, 1442, 1535
AfaI	GTAC	9 cut(s)	31, 197, 361, 728, 737, 852, 1437, 1613, 1671
AfiI	CCNNNNNNNGG	6 cut(s)	544, 545, 644, 1241, 1752, 2294
AflIII	ACRYGT	2 cut(s)	732, 1620
AgsI	TTSAA	9 cut(s)	126, 569, 765, 818, 1063, 1135, 1393, 1468, 2147
AjnI	CCWGG	7 cut(s)	160, 1020, 1245, 1449, 1635, 1745, 2251
AloI	GAACNNNNNNTCC	2 cut(s)	1127, 1159
Alw21I	GWGCWC	3 cut(s)	794, 1458, 1478
Alw26I	GTCTC	2 cut(s)	1391, 1727
AlwI	GGATC	3 cut(s)	1257, 2009, 2190
Ama87I	CYCGRG	1 cut(s)	1716
Aor13HI	TCCGGA	2 cut(s)	603, 1234
AoxI	GGCC	7 cut(s)	634, 646, 677, 1243, 1682, 2072, 2186
ApeKI	GCWGC	4 cut(s)	111, 1017, 1191, 1919
ApoI	RAATTY	6 cut(s)	189, 388, 526, 551, 970, 1815
AsiSI	GCGATCGC	1 cut(s)	802
AspLEI	GCGC	4 cut(s)	1002, 1196, 1334, 2108
AspS9I	GGNCC	3 cut(s)	635, 1383, 1447
AsuC2I	CCSGG	1 cut(s)	546
AsuHPI	GGTGA	3 cut(s)	17, 948, 1220
AsuII	TTCGAA	2 cut(s)	745, 1261
AvaI	CYCGRG	1 cut(s)	1716
AvaII	GGWCC	2 cut(s)	1383, 1447
AxyI	CCTNAGG	2 cut(s)	591, 2178
BalI	TGGCCA	1 cut(s)	1245
BanI	GGYRCC	1 cut(s)	1906
BanII	GRGCYC	1 cut(s)	1458
BauI	CACGAG	1 cut(s)	1485
BbsI	GAAGAC	2 cut(s)	540, 1307
Bbv12I	GWGCWC	3 cut(s)	794, 1458, 1478
BbvI	GCAGC	4 cut(s)	123, 1004, 1178, 1906
BccI	CCATC	7 cut(s)	125, 212, 407, 469, 474, 1283, 1919
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	7 cut(s)	162, 1022, 1247, 1451, 1637, 1747, 2253
BciVI	GTATCC	1 cut(s)	2332
BclI	TGATCA	2 cut(s)	868, 1654
BcnI	CCSGG	1 cut(s)	546
BcoDI	GTCTC	2 cut(s)	1391, 1727
BfaI	CTAG	4 cut(s)	650, 855, 1217, 1836
BfuI	GTATCC	1 cut(s)	2332
BglII	AGATCT	1 cut(s)	1768
BisI	GCNGC	4 cut(s)	112, 1018, 1192, 1920
BlsI	GCNGC	4 cut(s)	113, 1019, 1193, 1921
BmcAI	AGTACT	2 cut(s)	31, 1671
Bme1390I	CCNGG	8 cut(s)	162, 546, 1022, 1247, 1451, 1637, 1747, 2253
Bme18I	GGWCC	2 cut(s)	1383, 1447
BmeT110I	CYCGRG	1 cut(s)	1716
BmgT120I	GGNCC	3 cut(s)	635, 1383, 1447
BmiI	GGNNCC	1 cut(s)	1908
BmrFI	CCNGG	8 cut(s)	162, 546, 1022, 1247, 1451, 1637, 1747, 2253
BmsI	GCATC	7 cut(s)	87, 230, 674, 854, 1063, 1228, 2207
BoxI	GACNNNNGTC	1 cut(s)	540
BpiI	GAAGAC	2 cut(s)	540, 1307
BpmI	CTGGAG	3 cut(s)	1472, 1869, 1997
Bpu10I	CCTNAGC	2 cut(s)	1013, 1751
Bpu14I	TTCGAA	2 cut(s)	745, 1261
BpuMI	CCSGG	1 cut(s)	546
Bsa29I	ATCGAT	1 cut(s)	238
BsaI	GGTCTC	1 cut(s)	1727
BsaJI	CCNNGG	3 cut(s)	117, 545, 638
BsaWI	WCCGGW	4 cut(s)	263, 463, 603, 1234
Bsc4I	CCNNNNNNNGG	6 cut(s)	544, 545, 644, 1241, 1752, 2294
Bse1I	ACTGG	5 cut(s)	37, 920, 986, 1852, 1867
Bse21I	CCTNAGG	2 cut(s)	591, 2178
BseAI	TCCGGA	2 cut(s)	603, 1234
BseBI	CCWGG	7 cut(s)	162, 1022, 1247, 1451, 1637, 1747, 2253
BseCI	ATCGAT	1 cut(s)	238
BseDI	CCNNGG	3 cut(s)	117, 545, 638
BseGI	GGATG	7 cut(s)	204, 260, 485, 998, 1078, 1243, 2173
BseLI	CCNNNNNNNGG	6 cut(s)	544, 545, 644, 1241, 1752, 2294
BseMII	CTCAG	2 cut(s)	582, 2169
BseNI	ACTGG	5 cut(s)	37, 920, 986, 1852, 1867
BseRI	GAGGAG	2 cut(s)	1715, 1866
BseXI	GCAGC	4 cut(s)	123, 1004, 1178, 1906
BseYI	CCCAGC	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	798
Bsh1285I	CGRYCG	1 cut(s)	802
BshFI	GGCC	7 cut(s)	636, 648, 679, 1245, 1684, 2074, 2188
BshNI	GGYRCC	1 cut(s)	1906
BshVI	ATCGAT	1 cut(s)	238
BsiEI	CGRYCG	1 cut(s)	802
BsiHKAI	GWGCWC	3 cut(s)	794, 1458, 1478
BsiHKCI	CYCGRG	1 cut(s)	1716
BsiSI	CCGG	6 cut(s)	264, 464, 545, 604, 1070, 1235
BslFI	GGGAC	2 cut(s)	497, 1903
BslI	CCNNNNNNNGG	6 cut(s)	544, 545, 644, 1241, 1752, 2294
BsmAI	GTCTC	2 cut(s)	1391, 1727
BsmFI	GGGAC	2 cut(s)	497, 1903
BsmI	GAATGC	4 cut(s)	653, 1121, 1353, 2142
BsnI	GGCC	7 cut(s)	636, 648, 679, 1245, 1684, 2074, 2188
Bso31I	GGTCTC	1 cut(s)	1727
BsoBI	CYCGRG	1 cut(s)	1716
Bsp119I	TTCGAA	2 cut(s)	745, 1261
Bsp1286I	GDGCHC	3 cut(s)	794, 1458, 1478
Bsp13I	TCCGGA	2 cut(s)	603, 1234
Bsp1407I	TGTACA	1 cut(s)	735
Bsp19I	CCATGG	1 cut(s)	638
BspANI	GGCC	7 cut(s)	636, 648, 679, 1245, 1684, 2074, 2188
BspCNI	CTCAG	2 cut(s)	583, 2170
BspDI	ATCGAT	1 cut(s)	238
BspEI	TCCGGA	2 cut(s)	603, 1234
BspFNI	CGCG	1 cut(s)	798
BspLI	GGNNCC	1 cut(s)	1908
BspPI	GGATC	3 cut(s)	1257, 2009, 2190
BspT104I	TTCGAA	2 cut(s)	745, 1261
BspT107I	GGYRCC	1 cut(s)	1906
BspTNI	GGTCTC	1 cut(s)	1727
BsrGI	TGTACA	1 cut(s)	735
BsrI	ACTGG	5 cut(s)	37, 920, 986, 1852, 1867
BssECI	CCNNGG	3 cut(s)	117, 545, 638
BssSI	CACGAG	1 cut(s)	1485
BssT1I	CCWWGG	2 cut(s)	117, 638
Bst2BI	CACGAG	1 cut(s)	1485
Bst2UI	CCWGG	7 cut(s)	162, 1022, 1247, 1451, 1637, 1747, 2253
Bst4CI	ACNGT	3 cut(s)	220, 1142, 1674
Bst6I	CTCTTC	1 cut(s)	1590
BstAUI	TGTACA	1 cut(s)	735
BstBI	TTCGAA	2 cut(s)	745, 1261
BstC8I	GCNNGC	3 cut(s)	1243, 2165, 2284
BstDEI	CTNAG	9 cut(s)	345, 591, 674, 951, 1013, 1354, 1751, 1875, 2178
BstDSI	CCRYGG	1 cut(s)	638
BstENI	CCTNNNNNAGG	1 cut(s)	2292
BstF5I	GGATG	7 cut(s)	204, 260, 485, 998, 1078, 1243, 2173
BstFNI	CGCG	1 cut(s)	798
BstHHI	GCGC	4 cut(s)	1002, 1196, 1334, 2108
BstMAI	GTCTC	2 cut(s)	1391, 1727
BstMCI	CGRYCG	1 cut(s)	802
BstNI	CCWGG	7 cut(s)	162, 1022, 1247, 1451, 1637, 1747, 2253
BstNSI	RCATGY	3 cut(s)	736, 1624, 2112
BstPAI	GACNNNNGTC	1 cut(s)	540
BstSCI	CCNGG	8 cut(s)	160, 544, 1020, 1245, 1449, 1635, 1745, 2251
BstUI	CGCG	1 cut(s)	798
BstV1I	GCAGC	4 cut(s)	123, 1004, 1178, 1906
BstV2I	GAAGAC	2 cut(s)	540, 1307
BstX2I	RGATCY	2 cut(s)	1249, 1768
BstXI	CCANNNNNNTGG	1 cut(s)	966
BstYI	RGATCY	2 cut(s)	1249, 1768
Bsu15I	ATCGAT	1 cut(s)	238
Bsu36I	CCTNAGG	2 cut(s)	591, 2178
BsuI	GTATCC	1 cut(s)	2332
BsuRI	GGCC	7 cut(s)	636, 648, 679, 1245, 1684, 2074, 2188
BsuTUI	ATCGAT	1 cut(s)	238
BtgI	CCRYGG	1 cut(s)	638
BtsCI	GGATG	7 cut(s)	204, 260, 485, 998, 1078, 1243, 2173
BtsI	GCAGTG	1 cut(s)	1341
BtsIMutI	CAGTG	2 cut(s)	664, 1341
Cac8I	GCNNGC	3 cut(s)	1243, 2165, 2284
CfoI	GCGC	4 cut(s)	1002, 1196, 1334, 2108
Cfr13I	GGNCC	3 cut(s)	635, 1383, 1447
ClaI	ATCGAT	1 cut(s)	238
CsiI	ACCWGGT	1 cut(s)	2251
Csp6I	GTAC	9 cut(s)	30, 196, 360, 727, 736, 851, 1436, 1612, 1670
CspCI	CAANNNNNGTGG	2 cut(s)	1685, 1720
CviQI	GTAC	9 cut(s)	30, 196, 360, 727, 736, 851, 1436, 1612, 1670
DdeI	CTNAG	9 cut(s)	345, 591, 674, 951, 1013, 1354, 1751, 1875, 2178
DrdI	GACNNNNNNGTC	2 cut(s)	982, 1043
DseDI	GACNNNNNNGTC	2 cut(s)	982, 1043
EaeI	YGGCCR	2 cut(s)	1243, 2186
Eam1104I	CTCTTC	1 cut(s)	1590
EarI	CTCTTC	1 cut(s)	1590
Ecl136II	GAGCTC	1 cut(s)	1456
Eco130I	CCWWGG	2 cut(s)	117, 638
Eco147I	AGGCCT	2 cut(s)	679, 2074
Eco24I	GRGCYC	1 cut(s)	1458
Eco31I	GGTCTC	1 cut(s)	1727
Eco32I	GATATC	3 cut(s)	293, 1171, 1222
Eco47I	GGWCC	2 cut(s)	1383, 1447
Eco53kI	GAGCTC	1 cut(s)	1456
Eco57I	CTGAAG	4 cut(s)	139, 1257, 1442, 1535
Eco81I	CCTNAGG	2 cut(s)	591, 2178
Eco88I	CYCGRG	1 cut(s)	1716
EcoICRI	GAGCTC	1 cut(s)	1456
EcoNI	CCTNNNNNAGG	1 cut(s)	2292
EcoO109I	RGGNCCY	1 cut(s)	1447
EcoRI	GAATTC	2 cut(s)	551, 970
EcoRII	CCWGG	7 cut(s)	160, 1020, 1245, 1449, 1635, 1745, 2251
EcoRV	GATATC	3 cut(s)	293, 1171, 1222
EcoT14I	CCWWGG	2 cut(s)	117, 638
EcoT22I	ATGCAT	2 cut(s)	586, 847
EcoT38I	GRGCYC	1 cut(s)	1458
ErhI	CCWWGG	2 cut(s)	117, 638
FalI	AAGNNNNNCTT	2 cut(s)	2139, 2171
FaqI	GGGAC	2 cut(s)	497, 1903
FauNDI	CATATG	1 cut(s)	1894
FbaI	TGATCA	2 cut(s)	868, 1654
FblI	GTMKAC	2 cut(s)	934, 1371
Fnu4HI	GCNGC	4 cut(s)	112, 1018, 1192, 1920
FokI	GGATG	7 cut(s)	191, 247, 492, 1005, 1085, 1250, 2160
FriOI	GRGCYC	1 cut(s)	1458
Fsp4HI	GCNGC	4 cut(s)	112, 1018, 1192, 1920
FspBI	CTAG	4 cut(s)	650, 855, 1217, 1836
FspI	TGCGCA	1 cut(s)	1001
GlaI	GCGC	4 cut(s)	1001, 1195, 1333, 2107
GluI	GCNGC	4 cut(s)	112, 1018, 1192, 1920
GsaI	CCCAGC	1 cut(s)	149
GsuI	CTGGAG	3 cut(s)	1472, 1869, 1997
HaeIII	GGCC	7 cut(s)	636, 648, 679, 1245, 1684, 2074, 2188
HapII	CCGG	6 cut(s)	264, 464, 545, 604, 1070, 1235
HhaI	GCGC	4 cut(s)	1002, 1196, 1334, 2108
Hin6I	GCGC	4 cut(s)	1000, 1194, 1332, 2106
HinP1I	GCGC	4 cut(s)	1000, 1194, 1332, 2106
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HindIII	AAGCTT	5 cut(s)	136, 433, 1162, 1229, 1517
HinfI	GANTC	8 cut(s)	257, 380, 942, 1573, 1742, 1807, 2090, 2303
HpaII	CCGG	6 cut(s)	264, 464, 545, 604, 1070, 1235
HphI	GGTGA	3 cut(s)	17, 948, 1220
Hpy166II	GTNNAC	7 cut(s)	54, 73, 333, 935, 1053, 1093, 1372
Hpy188III	TCNNGA	8 cut(s)	384, 604, 1235, 1344, 1459, 1888, 2018, 2177
Hpy8I	GTNNAC	7 cut(s)	54, 73, 333, 935, 1053, 1093, 1372
HpyAV	CCTTC	4 cut(s)	456, 1986, 2060, 2064
HpyCH4III	ACNGT	3 cut(s)	220, 1142, 1674
HpyCH4IV	ACGT	3 cut(s)	1368, 1690, 2137
HpyF3I	CTNAG	9 cut(s)	345, 591, 674, 951, 1013, 1354, 1751, 1875, 2178
HpySE526I	ACGT	3 cut(s)	1368, 1690, 2137
HspAI	GCGC	4 cut(s)	1000, 1194, 1332, 2106
Kpn2I	TCCGGA	2 cut(s)	603, 1234
Ksp22I	TGATCA	2 cut(s)	868, 1654
LmnI	GCTCC	3 cut(s)	887, 1453, 1461
Lsp1109I	GCAGC	4 cut(s)	123, 1004, 1178, 1906
LweI	GCATC	7 cut(s)	87, 230, 674, 854, 1063, 1228, 2207
MabI	ACCWGGT	1 cut(s)	2251
MaeI	CTAG	4 cut(s)	650, 855, 1217, 1836
MaeII	ACGT	3 cut(s)	1368, 1690, 2137
MaeIII	GTNAC	9 cut(s)	83, 164, 179, 406, 459, 911, 954, 984, 2133
MboII	GAAGA	9 cut(s)	145, 484, 545, 1312, 1424, 1435, 1456, 1607, 1878
MflI	RGATCY	2 cut(s)	1249, 1768
MhlI	GDGCHC	3 cut(s)	794, 1458, 1478
MlsI	TGGCCA	1 cut(s)	1245
MluNI	TGGCCA	1 cut(s)	1245
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	1650
MnlI	CCTC	7 cut(s)	586, 828, 1175, 1438, 1736, 1844, 2173
Mox20I	TGGCCA	1 cut(s)	1245
Mph1103I	ATGCAT	2 cut(s)	586, 847
MroI	TCCGGA	2 cut(s)	603, 1234
MscI	TGGCCA	1 cut(s)	1245
MseI	TTAA	4 cut(s)	213, 501, 776, 1844
MslI	CAYNNNNRTG	2 cut(s)	991, 1262
Msp20I	TGGCCA	1 cut(s)	1245
MspI	CCGG	6 cut(s)	264, 464, 545, 604, 1070, 1235
MspR9I	CCNGG	8 cut(s)	162, 546, 1022, 1247, 1451, 1637, 1747, 2253
Mva1269I	GAATGC	4 cut(s)	653, 1121, 1353, 2142
MvaI	CCWGG	7 cut(s)	162, 1022, 1247, 1451, 1637, 1747, 2253
MvnI	CGCG	1 cut(s)	798
NciI	CCSGG	1 cut(s)	546
NcoI	CCATGG	1 cut(s)	638
NdeI	CATATG	1 cut(s)	1894
NlaIV	GGNNCC	1 cut(s)	1908
NmuCI	GTSAC	5 cut(s)	83, 406, 911, 954, 984
NsbI	TGCGCA	1 cut(s)	1001
NsiI	ATGCAT	2 cut(s)	586, 847
NspI	RCATGY	3 cut(s)	736, 1624, 2112
NspV	TTCGAA	2 cut(s)	745, 1261
PceI	AGGCCT	2 cut(s)	679, 2074
PciI	ACATGT	2 cut(s)	732, 1620
PctI	GAATGC	4 cut(s)	653, 1121, 1353, 2142
PfeI	GAWTC	7 cut(s)	380, 942, 1573, 1742, 1807, 2090, 2303
PflMI	CCANNNNNTGG	1 cut(s)	644
PkrI	GCNGC	4 cut(s)	113, 1019, 1193, 1921
Ple19I	CGATCG	1 cut(s)	802
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
PpuMI	RGGWCCY	1 cut(s)	1447
PscI	ACATGT	2 cut(s)	732, 1620
PshAI	GACNNNNGTC	1 cut(s)	540
PsiI	TTATAA	3 cut(s)	1535, 1985, 2210
Psp124BI	GAGCTC	1 cut(s)	1458
Psp1406I	AACGTT	1 cut(s)	1690
Psp5II	RGGWCCY	1 cut(s)	1447
Psp6I	CCWGG	7 cut(s)	160, 1020, 1245, 1449, 1635, 1745, 2251
PspFI	CCCAGC	1 cut(s)	145
PspGI	CCWGG	7 cut(s)	160, 1020, 1245, 1449, 1635, 1745, 2251
PspN4I	GGNNCC	1 cut(s)	1908
PspPI	GGNCC	3 cut(s)	635, 1383, 1447
PspPPI	RGGWCCY	1 cut(s)	1447
PsuI	RGATCY	2 cut(s)	1249, 1768
PvuI	CGATCG	1 cut(s)	802
RgaI	GCGATCGC	1 cut(s)	802
RsaI	GTAC	9 cut(s)	31, 197, 361, 728, 737, 852, 1437, 1613, 1671
RsaNI	GTAC	9 cut(s)	30, 196, 360, 727, 736, 851, 1436, 1612, 1670
RseI	CAYNNNNRTG	2 cut(s)	991, 1262
SacI	GAGCTC	1 cut(s)	1458
SaqAI	TTAA	4 cut(s)	213, 501, 776, 1844
SatI	GCNGC	4 cut(s)	112, 1018, 1192, 1920
Sau96I	GGNCC	3 cut(s)	635, 1383, 1447
ScaI	AGTACT	2 cut(s)	31, 1671
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	8 cut(s)	162, 546, 1022, 1247, 1451, 1637, 1747, 2253
SduI	GDGCHC	3 cut(s)	794, 1458, 1478
SexAI	ACCWGGT	1 cut(s)	2251
SfaAI	GCGATCGC	1 cut(s)	802
SfaNI	GCATC	7 cut(s)	87, 230, 674, 854, 1063, 1228, 2207
SfuI	TTCGAA	2 cut(s)	745, 1261
SgfI	GCGATCGC	1 cut(s)	802
SinI	GGWCC	2 cut(s)	1383, 1447
SmiMI	CAYNNNNRTG	2 cut(s)	991, 1262
SseBI	AGGCCT	2 cut(s)	679, 2074
SspI	AATATT	2 cut(s)	623, 1842
SspMI	CTAG	4 cut(s)	650, 855, 1217, 1836
SstI	GAGCTC	1 cut(s)	1458
StuI	AGGCCT	2 cut(s)	679, 2074
StyD4I	CCNGG	8 cut(s)	160, 544, 1020, 1245, 1449, 1635, 1745, 2251
StyI	CCWWGG	2 cut(s)	117, 638
TaaI	ACNGT	3 cut(s)	220, 1142, 1674
TaiI	ACGT	3 cut(s)	1371, 1693, 2140
TaqI	TCGA	7 cut(s)	170, 238, 438, 699, 745, 974, 1261
TatI	WGTACW	5 cut(s)	29, 359, 726, 735, 1669
TfiI	GAWTC	7 cut(s)	380, 942, 1573, 1742, 1807, 2090, 2303
Tru1I	TTAA	4 cut(s)	213, 501, 776, 1844
Tru9I	TTAA	4 cut(s)	213, 501, 776, 1844
TscAI	CASTG	2 cut(s)	664, 1341
TseFI	GTSAC	5 cut(s)	83, 406, 911, 954, 984
TseI	GCWGC	4 cut(s)	111, 1017, 1191, 1919
Tsp45I	GTSAC	5 cut(s)	83, 406, 911, 954, 984
TspGWI	ACGGA	2 cut(s)	89, 1644
TspRI	CASTG	2 cut(s)	664, 1341
Van91I	CCANNNNNTGG	1 cut(s)	644
VpaK11BI	GGWCC	2 cut(s)	1383, 1447
XagI	CCTNNNNNAGG	1 cut(s)	2292
XapI	RAATTY	6 cut(s)	189, 388, 526, 551, 970, 1815
XceI	RCATGY	3 cut(s)	736, 1624, 2112
XcmI	CCANNNNNNNNNTGG	4 cut(s)	1633, 1703, 2036, 2332
XmiI	GTMKAC	2 cut(s)	934, 1371
XspI	CTAG	4 cut(s)	650, 855, 1217, 1836
ZrmI	AGTACT	2 cut(s)	31, 1671
Zsp2I	ATGCAT	2 cut(s)	586, 847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.