Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000207

Physical Location & Seq

Genomic Coordinates Forward (+)

28858083 .. 28862422

Gene Structure 4340 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00105450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2460 bp

ATGGGTGATCTTTGTTTTGTGGTGTTTAGTACTAGTTTGCTCTTTCTGTTGTTCACAGGTTCGTTTGCAGTTGACAGCATCAGTCACTCGCAGTCTATCCGTGATAACGGCAGCACCTTGGTTTCAAGTGATGGAGGCTTTGAGCTGGGGTTCTTCAGTCCAGGTAACTCGAAAAATCGTTACTTGGGAATTTGGTACAAAAACATCCCAGTTAAAATTGTTGTTTGGGTTGCAAATCGATGCAAACCGATTGATGACTCATCCGGTGTGCTGATGATAAACAGCACAGGATATCTTGTGCTGTTGGGTCAGAATAAGAGTGTTGTTTGGTGGACAAGTTTGTCCAAGTATGCACAGAGTACAATGGTACAGCTATTAGATTCTGGAAATTTAGTAGTAAGAGATGTCACAGATGGAAAGTCATTGTGGCAAAGCTTCGATTATCCTTCTGATACATTGTTATCGGAAATGAAGATGGGATGGGACTTTAGGACAGGTCTTAAAAGGGGATTATCAGCATGGAAAAATTCAGAAGACCCATGTCCAGGGGAATTCACTTGTGGGATTGAAATGGAAACTCATGCATACCCTGAGGTATATTTCCGGAAAGGTGGTCTGAAATATTATCGTTCTGGCCCATGGAATGGCCTAGCATTCAGTGGTGCATCAGCACTAAGGCCTAATCCAATTTATAGTTTCGACTTTGTGTATAATGATGATGAAATGTACTACATGTACAAACTTCAAAGCAAGTCTGTAATTTCAATCATGGTCTTAAATGGAACAACGAGCACACGCGATCGCCTTACATGGATTGAAGCAGAGCAAACTTGGAGGGTCTATGCATCAGTACCTAGAGATTTCTGTGATCAATATAATCTCTGTGGAGCAAATGCAAATTGTGTCATTAGTGACAATCCAGTATGTCAATGTCTACAAGGATTCATGCCTAAGTCACCAGAGAAATGGAATTTGACAGACTGGTCTCTTGGATGTATTCGCAAGAAACCCCTAAGCTGCCAGGAAAGTGATAAAGACGGGTTTGTCAAGTTCACTAATTTGAAATTGCCGGACACTACACATTCTTGGGTGAACAAAAGTATGAACATCAATGAATGCAGAGACAAATGCTTGAACAACTGTTCCTGTATGGCTTATACAAGATTGGATGTCAGAGCAGGAGGTTCTGGCTGCGCCATTTGGTTTGGTAATCTACTAGATATCAGAAAGCTTCCGGATGCTGGTCAGGATCTATACATTCGAATGTCGGCTTCAGAGATAGATGATGATCGTAAAGTGAAGACAGGAATTATAGTTGCTGTTGTGATAGGCGCAGTGTTTTCAGGAATGCTCTTAGTTGGCTACTACGTCTACCGAAGCAGGACCAAATTGAAAGAGACAGAAAAAGGAAAAGAAAATCTGAAGAATGAAGGGGTACAGAAGGAGGACCTGGAGCTCCCAATGTTCAACATAAGCACAATAGCTAGTGCAACAGATAACTTTTCAGGTGATATGAAGCTTGGAGAAGGTGGCTTTGGACCTGTTTACAGGGGGACACTAGCAGATGGACAAGAAATTGCTGTGAAGAGGCTTTCAAGCAGTTCTGGCCAAGGATTTAACGAGTTCATGAATGAAATTAAACTGATAGCGAAACTTCAGCACCGAAATCTTGTAAAGATTCTTGGTTGTTGCGTGCAAGAAGGGGAGAAATTACTGATGTATGAATACATGCCCAACAGAAGCCTGGACTTCTTCATTTTTGATCAAACAAGGGAAGAACTACTGTTAGATTGGCCTAAACGTTTCCACATCATTTGTGGAATTGCTCGGGGTCTCCTTTATCTCCACCAAGATTCCAGGCTAAGGATTATACATAGAGATCTAAAAGCAAGTAATATTCTCCTTGATGATGAAATGAATCCTAAAATTTCAGACTTTGGCTTGGCTAGAATGTTAACTGGAGGAGATCAGACTGGAGGAAATACTAGGAGAGTGGTCGGGACATATGGCTACATGGCACCTGAATATGCTGCTGATGGGCTATTTTCTGTGAAATCCGATGTCTTTAGCTTTGGTATATTGGTGCTGGAGATTATAAGTGGAAGGAGAAACAAGGGATTTTATGATCCAGACAACAGCCATAATCTTATTGGAAATGCTTGGACATTGTGGAATGAAGGAAGGCCTTTAGAATTGATTGATTCATGGTTAGAGAACTCTTGTAATCTATCGGAAGTGGAAGTGTTACGTTGCATTCAAGTTGGTCTTTTGTGCGTGCAACATCATCATGAGGATCGGCCAAGCATGCCATCTGTGGTTATAATGTTGGGAAGTGATATTGCACTGGCTCAACCTAAACAACCTGGTTTCTTTATGGAAAAGGAACACAAAGCAAGCCCTGATATAGGTAATGAATCATCAACCTATGAAGTATCCATTTCGCTTTTGGAAGCTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

819

Amino Acids

92.02

Weight (kDa)

5.87

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	74 - 175	3.1e-34	D-mannose binding lectin
S_locus_glycop	PF00954	209 - 319	1.1e-27	S-locus glycoprotein domain
PAN_2	PF08276	340 - 408	1.4e-21	PAN-like domain
Pkinase	PF00069	504 - 703	2.2e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	505 - 724	1.3e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27300
fragaria_vesca	FvH4_3g15930 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g21350 FvH4_3g21400 FvH4_3g21400 FvH4_6g12332
malus_domestica	MD02G1167100.v1.1 MD02G1167200.v1.1 MD03G1185600.v1.1 MD05G1213900.v1.1 MD05G1214100.v1.1 MD05G1214200.v1.1 MD05G1214700.v1.1 MD05G1216300.v1.1 MD05G1216800.v1.1 MD05G1217300.v1.1 MD05G1218000.v1.1 MD11G1231100.v1.1 MD11G1231200.v1.1 MD11G1231400.v1.1 MD11G1231500.v1.1 MD11G1232400.v1.1 MD11G1232500.v1.1
prunus_persica	Prupe.4G142300_v2.0.a1 Prupe.4G142400_v2.0.a1 Prupe.4G142500_v2.0.a1 Prupe.4G142600_v2.0.a1 Prupe.4G142800_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195100_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195500_v2.0.a1 Prupe.4G195700_v2.0.a1 Prupe.4G195900_v2.0.a1
pyrus_communis	pycom03g16540 pycom05g19920 pycom11g20460 pycom11g20480 pycom11g20490 pycom11g20500 pycom11g20530
rosa_chinensis	RchiOBHm_Chr2g0139311 RchiOBHm_Chr2g0139351 RchiOBHm_Chr5g0026801 RchiOBHm_Chr5g0026851 RchiOBHm_Chr5g0026891 RchiOBHm_Chr5g0026911 RchiOBHm_Chr5g0036571 RchiOBHm_Chr5g0036591 RchiOBHm_Chr5g0036721 RchiOBHm_Chr5g0036741 RchiOBHm_Chr7g0222981
rosa_laevigata	RLG00000002006 RLG00000019807 RLG00000032964 RLG00000032968 RLG00000032969 RLG00000033706 RLG00000033708 RLG00000033712 RLG00000033716
rosa_multiflora	Rmu_co8256651.1_g000001 Rmu_co8279377.1_g000001 Rmu_co8429919.1_g000001 Rmu_co8490103.1_g000001 Rmu_sc0000774.1_g000002 Rmu_sc0002525.1_g000012 Rmu_sc0004223.1_g000008 Rmu_sc0004390.1_g000002 Rmu_sc0006059.1_g000014 Rmu_sc0006059.1_g000024 Rmu_sc0006514.1_g000020 Rmu_sc0014333.1_g000002 Rmu_ssc0000172.1_g000018 Rmu_ssc0000172.1_g000029
rosa_roxburghii	Rroxscaffold_1G00044230 Rroxscaffold_1G00044260 Rroxscaffold_1G00044320 Rroxscaffold_1G00044340 Rroxscaffold_1G00052560 Rroxscaffold_1G00052570 Rroxscaffold_1G00052660 Rroxscaffold_1G00052720 Rroxscaffold_2G00105450 Rroxscaffold_2G00105460
rosa_rugosa	Rorug02G0356900 Rorug02G0357000 Rorug02G0357100 Rorug02G0357200 Rorug02G0357300 Rorug02G0357400 Rorug02G0357500 Rorug02G0357600 Rorug05G0095400 Rorug05G0095500 Rorug05G0095500 Rorug05G0095600 Rorug05G0095700 Rorug05G0095800 Rorug05G0157700 Rorug05G0157800
rosa_samantha	Rh2AG406800 Rh2AG406900 Rh2BG417300 Rh2CG392900 Rh2DG426200 Rh5AG189300 Rh5AG249400 Rh5AG250100 Rh5BG186300 Rh5BG186900 Rh5BG187000 Rh5BG249500 Rh5BG250600 Rh5BG250900 Rh5BG251500 Rh5BG251800 Rh5CG205500 Rh5CG206300 Rh5CG206700 Rh5CG283000 Rh5CG283300 Rh5CG283500 Rh5DG188500 Rh5DG188700 Rh5DG258700 Rh5DG258900 Rh5DG259600 Rh5DG259900 Rh7CG375800 Rh7DG352500
rosa_wichuraiana	Rw2G032960 Rw2G032970 Rw2G033220 Rw2G033230 Rw5G017130 Rw5G017230 Rw5G022940 Rw5G022960 Rw5G022980 Rw7G030420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2096, 2321
AasI	GACNNNNNNGTC	3 cut(s)	340, 982, 1043
AccB1I	GGYRCC	1 cut(s)	2017
AccB7I	CCANNNNNTGG	1 cut(s)	644
AccI	GTMKAC	2 cut(s)	934, 1371
AccII	CGCG	1 cut(s)	798
AccIII	TCCGGA	2 cut(s)	603, 1234
AclI	AACGTT	1 cut(s)	1801
AclWI	GGATC	3 cut(s)	1257, 2120, 2301
AcoI	YGGCCR	2 cut(s)	1606, 2297
AcsI	RAATTY	6 cut(s)	189, 388, 526, 551, 970, 1926
AcuI	CTGAAG	4 cut(s)	139, 1257, 1442, 1640
AfaI	GTAC	8 cut(s)	31, 197, 361, 369, 728, 737, 852, 1437
AfiI	CCNNNNNNNGG	5 cut(s)	545, 644, 1241, 1863, 2405
AflIII	ACRYGT	1 cut(s)	732
AhlI	ACTAGT	1 cut(s)	32
AjnI	CCWGG	7 cut(s)	160, 544, 1020, 1449, 1743, 1856, 2362
AjuI	GAANNNNNNNTTGG	2 cut(s)	1518, 1550
AloI	GAACNNNNNNTCC	2 cut(s)	1127, 1159
Alw21I	GWGCWC	2 cut(s)	794, 1458
Alw26I	GTCTC	4 cut(s)	990, 1116, 1391, 1838
AlwI	GGATC	3 cut(s)	1257, 2120, 2301
Ama87I	CYCGRG	1 cut(s)	1827
Aor13HI	TCCGGA	2 cut(s)	603, 1234
AoxI	GGCC	7 cut(s)	634, 646, 677, 1606, 1793, 2183, 2297
ApeKI	GCWGC	4 cut(s)	111, 1017, 1191, 2030
ApoI	RAATTY	6 cut(s)	189, 388, 526, 551, 970, 1926
AsiSI	GCGATCGC	1 cut(s)	802
AspLEI	GCGC	2 cut(s)	1196, 1334
AspS9I	GGNCC	4 cut(s)	635, 1383, 1447, 1538
AsuHPI	GGTGA	4 cut(s)	17, 948, 1102, 1520
AsuII	TTCGAA	1 cut(s)	1261
AvaI	CYCGRG	1 cut(s)	1827
AvaII	GGWCC	3 cut(s)	1383, 1447, 1538
AxyI	CCTNAGG	1 cut(s)	591
BalI	TGGCCA	1 cut(s)	1608
BanI	GGYRCC	1 cut(s)	2017
BanII	GRGCYC	1 cut(s)	1458
BbsI	GAAGAC	2 cut(s)	540, 1307
Bbv12I	GWGCWC	2 cut(s)	794, 1458
BbvI	GCAGC	4 cut(s)	123, 1004, 1178, 2017
BccI	CCATC	7 cut(s)	125, 407, 469, 474, 1559, 2030, 2317
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	7 cut(s)	162, 546, 1022, 1451, 1745, 1858, 2364
BciVI	GTATCC	1 cut(s)	2443
BclI	TGATCA	2 cut(s)	868, 1762
BcoDI	GTCTC	4 cut(s)	990, 1116, 1391, 1838
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	8 cut(s)	33, 650, 855, 1217, 1485, 1559, 1947, 1986
BfuI	GTATCC	1 cut(s)	2443
BglII	AGATCT	1 cut(s)	1879
BisI	GCNGC	4 cut(s)	112, 1018, 1192, 2031
BlsI	GCNGC	4 cut(s)	113, 1019, 1193, 2032
BmcAI	AGTACT	1 cut(s)	31
Bme1390I	CCNGG	7 cut(s)	162, 546, 1022, 1451, 1745, 1858, 2364
Bme18I	GGWCC	3 cut(s)	1383, 1447, 1538
BmeT110I	CYCGRG	1 cut(s)	1827
BmgT120I	GGNCC	4 cut(s)	635, 1383, 1447, 1538
BmiI	GGNNCC	1 cut(s)	2019
BmrFI	CCNGG	7 cut(s)	162, 546, 1022, 1451, 1745, 1858, 2364
BmrI	ACTGGG	1 cut(s)	203
BmsI	GCATC	5 cut(s)	87, 230, 674, 854, 1228
BmuI	ACTGGG	1 cut(s)	203
BoxI	GACNNNNGTC	1 cut(s)	540
BpiI	GAAGAC	2 cut(s)	540, 1307
BpmI	CTGGAG	4 cut(s)	1472, 1980, 1995, 2108
Bpu10I	CCTNAGC	2 cut(s)	1013, 1862
Bpu14I	TTCGAA	1 cut(s)	1261
Bsa29I	ATCGAT	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	1287
BsaI	GGTCTC	2 cut(s)	990, 1838
BsaJI	CCNNGG	4 cut(s)	117, 545, 638, 1609
BsaWI	WCCGGW	3 cut(s)	263, 603, 1234
Bsc4I	CCNNNNNNNGG	5 cut(s)	545, 644, 1241, 1863, 2405
Bse1I	ACTGG	6 cut(s)	209, 920, 986, 1963, 1978, 2349
Bse21I	CCTNAGG	1 cut(s)	591
Bse8I	GATNNNNATC	1 cut(s)	1287
BseAI	TCCGGA	2 cut(s)	603, 1234
BseBI	CCWGG	7 cut(s)	162, 546, 1022, 1451, 1745, 1858, 2364
BseCI	ATCGAT	1 cut(s)	238
BseDI	CCNNGG	4 cut(s)	117, 545, 638, 1609
BseGI	GGATG	6 cut(s)	204, 260, 485, 998, 1174, 1243
BseJI	GATNNNNATC	1 cut(s)	1287
BseLI	CCNNNNNNNGG	5 cut(s)	545, 644, 1241, 1863, 2405
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	6 cut(s)	209, 920, 986, 1963, 1978, 2349
BseRI	GAGGAG	1 cut(s)	1977
BseXI	GCAGC	4 cut(s)	123, 1004, 1178, 2017
BseYI	CCCAGC	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	798
Bsh1285I	CGRYCG	1 cut(s)	802
BshFI	GGCC	7 cut(s)	636, 648, 679, 1608, 1795, 2185, 2299
BshNI	GGYRCC	1 cut(s)	2017
BshVI	ATCGAT	1 cut(s)	238
BsiEI	CGRYCG	1 cut(s)	802
BsiHKAI	GWGCWC	2 cut(s)	794, 1458
BsiHKCI	CYCGRG	1 cut(s)	1827
BsiSI	CCGG	4 cut(s)	264, 604, 1070, 1235
BslFI	GGGAC	3 cut(s)	497, 1567, 2014
BslI	CCNNNNNNNGG	5 cut(s)	545, 644, 1241, 1863, 2405
BsmAI	GTCTC	4 cut(s)	990, 1116, 1391, 1838
BsmFI	GGGAC	3 cut(s)	497, 1567, 2014
BsmI	GAATGC	4 cut(s)	653, 1121, 1353, 2253
BsnI	GGCC	7 cut(s)	636, 648, 679, 1608, 1795, 2185, 2299
Bso31I	GGTCTC	2 cut(s)	990, 1838
BsoBI	CYCGRG	1 cut(s)	1827
Bsp119I	TTCGAA	1 cut(s)	1261
Bsp1286I	GDGCHC	2 cut(s)	794, 1458
Bsp13I	TCCGGA	2 cut(s)	603, 1234
Bsp1407I	TGTACA	1 cut(s)	735
Bsp19I	CCATGG	1 cut(s)	638
BspANI	GGCC	7 cut(s)	636, 648, 679, 1608, 1795, 2185, 2299
BspCNI	CTCAG	1 cut(s)	583
BspDI	ATCGAT	1 cut(s)	238
BspEI	TCCGGA	2 cut(s)	603, 1234
BspFNI	CGCG	1 cut(s)	798
BspHI	TCATGA	2 cut(s)	1626, 2287
BspLI	GGNNCC	1 cut(s)	2019
BspPI	GGATC	3 cut(s)	1257, 2120, 2301
BspT104I	TTCGAA	1 cut(s)	1261
BspT107I	GGYRCC	1 cut(s)	2017
BspTNI	GGTCTC	2 cut(s)	990, 1838
BsrGI	TGTACA	1 cut(s)	735
BsrI	ACTGG	6 cut(s)	209, 920, 986, 1963, 1978, 2349
BssECI	CCNNGG	4 cut(s)	117, 545, 638, 1609
BssT1I	CCWWGG	3 cut(s)	117, 638, 1609
Bst2UI	CCWGG	7 cut(s)	162, 546, 1022, 1451, 1745, 1858, 2364
Bst4CI	ACNGT	2 cut(s)	1142, 1785
Bst6I	CTCTTC	1 cut(s)	1580
BstAUI	TGTACA	1 cut(s)	735
BstBI	TTCGAA	1 cut(s)	1261
BstC8I	GCNNGC	4 cut(s)	1694, 2276, 2306, 2395
BstDEI	CTNAG	6 cut(s)	591, 674, 951, 1013, 1354, 1862
BstDSI	CCRYGG	1 cut(s)	638
BstENI	CCTNNNNNAGG	1 cut(s)	2403
BstF5I	GGATG	6 cut(s)	204, 260, 485, 998, 1174, 1243
BstFNI	CGCG	1 cut(s)	798
BstHHI	GCGC	2 cut(s)	1196, 1334
BstMAI	GTCTC	4 cut(s)	990, 1116, 1391, 1838
BstMCI	CGRYCG	1 cut(s)	802
BstMWI	GCNNNNNNNGC	2 cut(s)	1605, 2305
BstNI	CCWGG	7 cut(s)	162, 546, 1022, 1451, 1745, 1858, 2364
BstNSI	RCATGY	3 cut(s)	736, 1732, 2308
BstPAI	GACNNNNGTC	1 cut(s)	540
BstSCI	CCNGG	7 cut(s)	160, 544, 1020, 1449, 1743, 1856, 2362
BstUI	CGCG	1 cut(s)	798
BstV1I	GCAGC	4 cut(s)	123, 1004, 1178, 2017
BstV2I	GAAGAC	2 cut(s)	540, 1307
BstX2I	RGATCY	2 cut(s)	1249, 1879
BstXI	CCANNNNNNTGG	1 cut(s)	966
BstYI	RGATCY	2 cut(s)	1249, 1879
Bsu15I	ATCGAT	1 cut(s)	238
Bsu36I	CCTNAGG	1 cut(s)	591
BsuI	GTATCC	1 cut(s)	2443
BsuRI	GGCC	7 cut(s)	636, 648, 679, 1608, 1795, 2185, 2299
BsuTUI	ATCGAT	1 cut(s)	238
BtgI	CCRYGG	1 cut(s)	638
BtsCI	GGATG	6 cut(s)	204, 260, 485, 998, 1174, 1243
BtsI	GCAGTG	1 cut(s)	1341
BtsIMutI	CAGTG	3 cut(s)	664, 1341, 2342
Cac8I	GCNNGC	4 cut(s)	1694, 2276, 2306, 2395
CciI	TCATGA	2 cut(s)	1626, 2287
CfoI	GCGC	2 cut(s)	1196, 1334
Cfr13I	GGNCC	4 cut(s)	635, 1383, 1447, 1538
ClaI	ATCGAT	1 cut(s)	238
CsiI	ACCWGGT	1 cut(s)	2362
Csp6I	GTAC	8 cut(s)	30, 196, 360, 368, 727, 736, 851, 1436
CspCI	CAANNNNNGTGG	2 cut(s)	1796, 1831
CviQI	GTAC	8 cut(s)	30, 196, 360, 368, 727, 736, 851, 1436
DdeI	CTNAG	6 cut(s)	591, 674, 951, 1013, 1354, 1862
DrdI	GACNNNNNNGTC	3 cut(s)	340, 982, 1043
DseDI	GACNNNNNNGTC	3 cut(s)	340, 982, 1043
EaeI	YGGCCR	2 cut(s)	1606, 2297
Eam1104I	CTCTTC	1 cut(s)	1580
EarI	CTCTTC	1 cut(s)	1580
Ecl136II	GAGCTC	1 cut(s)	1456
Eco130I	CCWWGG	3 cut(s)	117, 638, 1609
Eco147I	AGGCCT	2 cut(s)	679, 2185
Eco24I	GRGCYC	1 cut(s)	1458
Eco31I	GGTCTC	2 cut(s)	990, 1838
Eco32I	GATATC	2 cut(s)	293, 1222
Eco47I	GGWCC	3 cut(s)	1383, 1447, 1538
Eco53kI	GAGCTC	1 cut(s)	1456
Eco57I	CTGAAG	4 cut(s)	139, 1257, 1442, 1640
Eco81I	CCTNAGG	1 cut(s)	591
Eco88I	CYCGRG	1 cut(s)	1827
EcoICRI	GAGCTC	1 cut(s)	1456
EcoNI	CCTNNNNNAGG	1 cut(s)	2403
EcoO109I	RGGNCCY	1 cut(s)	1447
EcoRI	GAATTC	1 cut(s)	551
EcoRII	CCWGG	7 cut(s)	160, 544, 1020, 1449, 1743, 1856, 2362
EcoRV	GATATC	2 cut(s)	293, 1222
EcoT14I	CCWWGG	3 cut(s)	117, 638, 1609
EcoT22I	ATGCAT	2 cut(s)	586, 847
EcoT38I	GRGCYC	1 cut(s)	1458
ErhI	CCWWGG	3 cut(s)	117, 638, 1609
FalI	AAGNNNNNCTT	2 cut(s)	2250, 2282
FaqI	GGGAC	3 cut(s)	497, 1567, 2014
FauNDI	CATATG	1 cut(s)	2005
FbaI	TGATCA	2 cut(s)	868, 1762
FblI	GTMKAC	2 cut(s)	934, 1371
Fnu4HI	GCNGC	4 cut(s)	112, 1018, 1192, 2031
FokI	GGATG	6 cut(s)	191, 247, 492, 1005, 1181, 1250
FriOI	GRGCYC	1 cut(s)	1458
Fsp4HI	GCNGC	4 cut(s)	112, 1018, 1192, 2031
FspBI	CTAG	8 cut(s)	33, 650, 855, 1217, 1485, 1559, 1947, 1986
GlaI	GCGC	2 cut(s)	1195, 1333
GluI	GCNGC	4 cut(s)	112, 1018, 1192, 2031
GsaI	CCCAGC	1 cut(s)	149
GsuI	CTGGAG	4 cut(s)	1472, 1980, 1995, 2108
HaeIII	GGCC	7 cut(s)	636, 648, 679, 1608, 1795, 2185, 2299
HapII	CCGG	4 cut(s)	264, 604, 1070, 1235
HhaI	GCGC	2 cut(s)	1196, 1334
Hin6I	GCGC	2 cut(s)	1194, 1332
HinP1I	GCGC	2 cut(s)	1194, 1332
HincII	GTYRAC	2 cut(s)	73, 1956
HindII	GTYRAC	2 cut(s)	73, 1956
HindIII	AAGCTT	3 cut(s)	433, 1229, 1517
HinfI	GANTC	8 cut(s)	257, 380, 942, 1678, 1853, 1918, 2201, 2414
HpaI	GTTAAC	1 cut(s)	1956
HpaII	CCGG	4 cut(s)	264, 604, 1070, 1235
HphI	GGTGA	4 cut(s)	17, 948, 1102, 1520
Hpy166II	GTNNAC	9 cut(s)	54, 73, 333, 935, 1053, 1093, 1372, 1546, 1956
Hpy188III	TCNNGA	9 cut(s)	384, 604, 1235, 1247, 1344, 1627, 1999, 2129, 2288
Hpy8I	GTNNAC	9 cut(s)	54, 73, 333, 935, 1053, 1093, 1372, 1546, 1956
HpyAV	CCTTC	8 cut(s)	456, 1424, 1435, 1520, 1694, 2097, 2171, 2175
HpyCH4III	ACNGT	2 cut(s)	1142, 1785
HpyCH4IV	ACGT	3 cut(s)	1368, 1801, 2248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1605, 2305
HpyF3I	CTNAG	6 cut(s)	591, 674, 951, 1013, 1354, 1862
HpySE526I	ACGT	3 cut(s)	1368, 1801, 2248
HspAI	GCGC	2 cut(s)	1194, 1332
Kpn2I	TCCGGA	2 cut(s)	603, 1234
Ksp22I	TGATCA	2 cut(s)	868, 1762
KspAI	GTTAAC	1 cut(s)	1956
LmnI	GCTCC	3 cut(s)	887, 1453, 1461
Lsp1109I	GCAGC	4 cut(s)	123, 1004, 1178, 2017
LweI	GCATC	5 cut(s)	87, 230, 674, 854, 1228
MabI	ACCWGGT	1 cut(s)	2362
MaeI	CTAG	8 cut(s)	33, 650, 855, 1217, 1485, 1559, 1947, 1986
MaeII	ACGT	3 cut(s)	1368, 1801, 2248
MaeIII	GTNAC	7 cut(s)	83, 164, 179, 406, 911, 954, 2244
MboII	GAAGA	8 cut(s)	145, 484, 545, 1312, 1435, 1597, 1744, 1787
MflI	RGATCY	2 cut(s)	1249, 1879
MhlI	GDGCHC	2 cut(s)	794, 1458
MlsI	TGGCCA	1 cut(s)	1608
MluNI	TGGCCA	1 cut(s)	1608
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	9 cut(s)	128, 586, 828, 1175, 1438, 1581, 1955, 1970, 2284
Mox20I	TGGCCA	1 cut(s)	1608
Mph1103I	ATGCAT	2 cut(s)	586, 847
MroI	TCCGGA	2 cut(s)	603, 1234
MscI	TGGCCA	1 cut(s)	1608
MseI	TTAA	6 cut(s)	213, 501, 776, 1617, 1638, 1955
MslI	CAYNNNNRTG	2 cut(s)	1262, 2286
Msp20I	TGGCCA	1 cut(s)	1608
MspI	CCGG	4 cut(s)	264, 604, 1070, 1235
MspR9I	CCNGG	7 cut(s)	162, 546, 1022, 1451, 1745, 1858, 2364
Mva1269I	GAATGC	4 cut(s)	653, 1121, 1353, 2253
MvaI	CCWGG	7 cut(s)	162, 546, 1022, 1451, 1745, 1858, 2364
MvnI	CGCG	1 cut(s)	798
MwoI	GCNNNNNNNGC	2 cut(s)	1605, 2305
NcoI	CCATGG	1 cut(s)	638
NdeI	CATATG	1 cut(s)	2005
NlaIV	GGNNCC	1 cut(s)	2019
NmuCI	GTSAC	4 cut(s)	83, 406, 911, 954
NsiI	ATGCAT	2 cut(s)	586, 847
NspI	RCATGY	3 cut(s)	736, 1732, 2308
NspV	TTCGAA	1 cut(s)	1261
PaeI	GCATGC	1 cut(s)	2308
PagI	TCATGA	2 cut(s)	1626, 2287
PceI	AGGCCT	2 cut(s)	679, 2185
PciI	ACATGT	1 cut(s)	732
PctI	GAATGC	4 cut(s)	653, 1121, 1353, 2253
PfeI	GAWTC	7 cut(s)	380, 942, 1678, 1853, 1918, 2201, 2414
PflMI	CCANNNNNTGG	1 cut(s)	644
PkrI	GCNGC	4 cut(s)	113, 1019, 1193, 2032
Ple19I	CGATCG	1 cut(s)	802
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
PpuMI	RGGWCCY	1 cut(s)	1447
PscI	ACATGT	1 cut(s)	732
PshAI	GACNNNNGTC	1 cut(s)	540
PsiI	TTATAA	2 cut(s)	2096, 2321
Psp124BI	GAGCTC	1 cut(s)	1458
Psp1406I	AACGTT	1 cut(s)	1801
Psp5II	RGGWCCY	1 cut(s)	1447
Psp6I	CCWGG	7 cut(s)	160, 544, 1020, 1449, 1743, 1856, 2362
PspFI	CCCAGC	1 cut(s)	145
PspGI	CCWGG	7 cut(s)	160, 544, 1020, 1449, 1743, 1856, 2362
PspN4I	GGNNCC	1 cut(s)	2019
PspPI	GGNCC	4 cut(s)	635, 1383, 1447, 1538
PspPPI	RGGWCCY	1 cut(s)	1447
PsuI	RGATCY	2 cut(s)	1249, 1879
PvuI	CGATCG	1 cut(s)	802
RgaI	GCGATCGC	1 cut(s)	802
RsaI	GTAC	8 cut(s)	31, 197, 361, 369, 728, 737, 852, 1437
RsaNI	GTAC	8 cut(s)	30, 196, 360, 368, 727, 736, 851, 1436
RseI	CAYNNNNRTG	2 cut(s)	1262, 2286
SacI	GAGCTC	1 cut(s)	1458
SaqAI	TTAA	6 cut(s)	213, 501, 776, 1617, 1638, 1955
SatI	GCNGC	4 cut(s)	112, 1018, 1192, 2031
Sau96I	GGNCC	4 cut(s)	635, 1383, 1447, 1538
ScaI	AGTACT	1 cut(s)	31
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	7 cut(s)	162, 546, 1022, 1451, 1745, 1858, 2364
SduI	GDGCHC	2 cut(s)	794, 1458
SexAI	ACCWGGT	1 cut(s)	2362
SfaAI	GCGATCGC	1 cut(s)	802
SfaNI	GCATC	5 cut(s)	87, 230, 674, 854, 1228
SfuI	TTCGAA	1 cut(s)	1261
SgfI	GCGATCGC	1 cut(s)	802
SinI	GGWCC	3 cut(s)	1383, 1447, 1538
SmiMI	CAYNNNNRTG	2 cut(s)	1262, 2286
SpeI	ACTAGT	1 cut(s)	32
SphI	GCATGC	1 cut(s)	2308
SseBI	AGGCCT	2 cut(s)	679, 2185
SspI	AATATT	2 cut(s)	623, 1897
SspMI	CTAG	8 cut(s)	33, 650, 855, 1217, 1485, 1559, 1947, 1986
SstI	GAGCTC	1 cut(s)	1458
StuI	AGGCCT	2 cut(s)	679, 2185
StyD4I	CCNGG	7 cut(s)	160, 544, 1020, 1449, 1743, 1856, 2362
StyI	CCWWGG	3 cut(s)	117, 638, 1609
TaaI	ACNGT	2 cut(s)	1142, 1785
TaiI	ACGT	3 cut(s)	1371, 1804, 2251
TaqI	TCGA	5 cut(s)	170, 238, 438, 699, 1261
TatI	WGTACW	4 cut(s)	29, 359, 726, 735
TfiI	GAWTC	7 cut(s)	380, 942, 1678, 1853, 1918, 2201, 2414
Tru1I	TTAA	6 cut(s)	213, 501, 776, 1617, 1638, 1955
Tru9I	TTAA	6 cut(s)	213, 501, 776, 1617, 1638, 1955
TscAI	CASTG	3 cut(s)	664, 1341, 2349
TseFI	GTSAC	4 cut(s)	83, 406, 911, 954
TseI	GCWGC	4 cut(s)	111, 1017, 1191, 2030
Tsp45I	GTSAC	4 cut(s)	83, 406, 911, 954
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	3 cut(s)	664, 1341, 2349
Van91I	CCANNNNNTGG	1 cut(s)	644
VpaK11BI	GGWCC	3 cut(s)	1383, 1447, 1538
XagI	CCTNNNNNAGG	1 cut(s)	2403
XapI	RAATTY	6 cut(s)	189, 388, 526, 551, 970, 1926
XceI	RCATGY	3 cut(s)	736, 1732, 2308
XcmI	CCANNNNNNNNNTGG	4 cut(s)	1741, 1814, 2147, 2443
XmiI	GTMKAC	2 cut(s)	934, 1371
XspI	CTAG	8 cut(s)	33, 650, 855, 1217, 1485, 1559, 1947, 1986
ZrmI	AGTACT	1 cut(s)	31
Zsp2I	ATGCAT	2 cut(s)	586, 847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.