Rorug05G0095800

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000207
Physical Location & Seq
Forward (+)
8517288 .. 8517548
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0095800.1

Sequence Viewer

Length: 261 bp
ATGCTGATGCAGAAGCCATATTGGAGGCCTGCCGGAAAAACTTTAGACACCTTGAAAAAAGCCTGTTTTCGTGTTAAGGCAGATTTGAGTAGAAACTCTACACCTGGTCGATCAGAAGTATTGGCATTGGGAGATGAAAGGTGTATTGAAATAGGACAGAGGGATTTGGACAGAAATCAAGTGCGGTTTGTTCGTCGGGACAACTCCGAAAAAGTGGACATTCCTCTGAAGAATGATTTGGTCGAGCGAGTCGTTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

86

Amino Acids

9.91

Weight (kDa)

9.62

Isoelectric Point (pI)

32.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27300
fragaria_vesca FvH4_3g15930 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g21350 FvH4_3g21400 FvH4_3g21400 FvH4_6g12332
malus_domestica MD02G1167100.v1.1 MD02G1167200.v1.1 MD03G1185600.v1.1 MD05G1213900.v1.1 MD05G1214100.v1.1 MD05G1214200.v1.1 MD05G1214700.v1.1 MD05G1216300.v1.1 MD05G1216800.v1.1 MD05G1217300.v1.1 MD05G1218000.v1.1 MD11G1231100.v1.1 MD11G1231200.v1.1 MD11G1231400.v1.1 MD11G1231500.v1.1 MD11G1232400.v1.1 MD11G1232500.v1.1
prunus_persica Prupe.4G142300_v2.0.a1 Prupe.4G142400_v2.0.a1 Prupe.4G142500_v2.0.a1 Prupe.4G142600_v2.0.a1 Prupe.4G142800_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195100_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195500_v2.0.a1 Prupe.4G195700_v2.0.a1 Prupe.4G195900_v2.0.a1
pyrus_communis pycom03g16540 pycom05g19920 pycom11g20460 pycom11g20480 pycom11g20490 pycom11g20500 pycom11g20530
rosa_chinensis RchiOBHm_Chr2g0139311 RchiOBHm_Chr2g0139351 RchiOBHm_Chr5g0026801 RchiOBHm_Chr5g0026851 RchiOBHm_Chr5g0026891 RchiOBHm_Chr5g0026911 RchiOBHm_Chr5g0036571 RchiOBHm_Chr5g0036591 RchiOBHm_Chr5g0036721 RchiOBHm_Chr5g0036741 RchiOBHm_Chr7g0222981
rosa_laevigata RLG00000002006 RLG00000019807 RLG00000032964 RLG00000032968 RLG00000032969 RLG00000033706 RLG00000033708 RLG00000033712 RLG00000033716
rosa_multiflora Rmu_co8256651.1_g000001 Rmu_co8279377.1_g000001 Rmu_co8429919.1_g000001 Rmu_co8490103.1_g000001 Rmu_sc0000774.1_g000002 Rmu_sc0002525.1_g000012 Rmu_sc0004223.1_g000008 Rmu_sc0004390.1_g000002 Rmu_sc0006059.1_g000014 Rmu_sc0006059.1_g000024 Rmu_sc0006514.1_g000020 Rmu_sc0014333.1_g000002 Rmu_ssc0000172.1_g000018 Rmu_ssc0000172.1_g000029
rosa_roxburghii Rroxscaffold_1G00044230 Rroxscaffold_1G00044260 Rroxscaffold_1G00044320 Rroxscaffold_1G00044340 Rroxscaffold_1G00052560 Rroxscaffold_1G00052570 Rroxscaffold_1G00052660 Rroxscaffold_1G00052720 Rroxscaffold_2G00105450 Rroxscaffold_2G00105460
rosa_rugosa Rorug02G0356900 Rorug02G0357000 Rorug02G0357100 Rorug02G0357200 Rorug02G0357300 Rorug02G0357400 Rorug02G0357500 Rorug02G0357600 Rorug05G0095400 Rorug05G0095500 Rorug05G0095500 Rorug05G0095600 Rorug05G0095700 Rorug05G0095800 Rorug05G0157700 Rorug05G0157800
rosa_samantha Rh2AG406800 Rh2AG406900 Rh2BG417300 Rh2CG392900 Rh2DG426200 Rh5AG189300 Rh5AG249400 Rh5AG250100 Rh5BG186300 Rh5BG186900 Rh5BG187000 Rh5BG249500 Rh5BG250600 Rh5BG250900 Rh5BG251500 Rh5BG251800 Rh5CG205500 Rh5CG206300 Rh5CG206700 Rh5CG283000 Rh5CG283300 Rh5CG283500 Rh5DG188500 Rh5DG188700 Rh5DG258700 Rh5DG258900 Rh5DG259600 Rh5DG259900 Rh7CG375800 Rh7DG352500
rosa_wichuraiana Rw2G032960 Rw2G032970 Rw2G033220 Rw2G033230 Rw5G017130 Rw5G017230 Rw5G022940 Rw5G022960 Rw5G022980 Rw7G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 184
AcuI CTGAAG 1 cut(s) 248
AgsI TTSAA 2 cut(s) 55, 149
AjnI CCWGG 1 cut(s) 103
AjuI GAANNNNNNNTTGG 2 cut(s) 221, 253
AoxI GGCC 1 cut(s) 26
BciT130I CCWGG 1 cut(s) 105
Bme1390I CCNGG 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 105
BshFI GGCC 1 cut(s) 28
BsiSI CCGG 1 cut(s) 33
BslFI GGGAC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 1 cut(s) 28
Bsp143I GATC 1 cut(s) 110
BspACI CCGC 1 cut(s) 184
BspANI GGCC 1 cut(s) 28
BssMI GATC 1 cut(s) 110
Bst2UI CCWGG 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 30
BstKTI GATC 1 cut(s) 113
BstMBI GATC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BsuRI GGCC 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 30
CsiI ACCWGGT 1 cut(s) 103
CviJI RGCY 3 cut(s) 16, 28, 62
CviKI_1 RGCY 3 cut(s) 16, 28, 62
DpnI GATC 1 cut(s) 112
DpnII GATC 1 cut(s) 110
Eco147I AGGCCT 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 103
FaiI YATR 1 cut(s) 19
FaqI GGGAC 1 cut(s) 212
HaeIII GGCC 1 cut(s) 28
HapII CCGG 1 cut(s) 33
HinfI GANTC 1 cut(s) 249
HpaII CCGG 1 cut(s) 33
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 3 cut(s) 115, 208, 228
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 1 cut(s) 217
Hpy99I CGWCG 1 cut(s) 198
HpyCH4V TGCA 1 cut(s) 10
Kzo9I GATC 1 cut(s) 110
LpnPI CCDG 5 cut(s) 42, 46, 76, 90, 117
MabI ACCWGGT 1 cut(s) 103
MalI GATC 1 cut(s) 112
MboI GATC 1 cut(s) 110
MboII GAAGA 1 cut(s) 241
MlyI GAGTC 1 cut(s) 258
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 3 cut(s) 18, 153, 234
MseI TTAA 1 cut(s) 75
MspI CCGG 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
NdeII GATC 1 cut(s) 110
PceI AGGCCT 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
SaqAI TTAA 1 cut(s) 75
Sau3AI GATC 1 cut(s) 110
SchI GAGTC 1 cut(s) 258
ScrFI CCNGG 1 cut(s) 105
SetI ASST 3 cut(s) 53, 106, 143
SexAI ACCWGGT 1 cut(s) 103
SseBI AGGCCT 1 cut(s) 28
SsiI CCGC 1 cut(s) 184
StuI AGGCCT 1 cut(s) 28
StyD4I CCNGG 1 cut(s) 103
TaqI TCGA 2 cut(s) 109, 243
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TspDTI ATGAA 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.