Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000207

Physical Location & Seq

Genomic Coordinates Forward (+)

46969784 .. 46983118

Gene Structure 13335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG352500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAACCTCATGCATACCCTGAGGCATATTTTCGGAAAGGTGGTCTGAAATTTTATCGTTCTGGCCCATGGAATGGCCTAAGATTCAGTGGCGCAGCAGCTCTAAGGCCTAATCCAATTTATAGTTTCGATTTTGTGCATAATGATGATGAAGTTTACTACATGTACAAACTTCAAAGCAAGTCTGTAATTTCAATCGTGGTCTTAAATGGAACGACGAGTACGCGCCATCGCCTTACATGGATTGAAGCAGAGCACACTTGGAGGGCCTATGCAATAGTACCTAGAGATTTCTGTGATCAATATGGCCTCTGTGGAGCAAATGCAGAGTGTATCGTTAGTAACAGTCCAGTATGTCAATGTCTACAAGGATTCACGCCCAAGTCACCAGAGAAATGGAATTTGACAGACTGGTCACTTGGATGTACGCGCAAGAAACCCCTAAGCTGCCAGGAAAGTGATAAAGACGGGTTTGTCAAATTCACTGACTTGAAATTGCCAGATACTACACATTCTTGGGTGAACAAAAGTACGAACATCAAGGAATGCAGAGCCAAATGCTTGAACAACTGTTCCTGTATGGCTTATACAAGCTCGGACATTAAAGCAGGAGGTTCTGGCTGCGCCATTTGGTTTGGTGATCTACTAGATATCAGAAAGATTCCGGATGCTGGCCAAGATCTTTACATTCGAATGTCAGCTTCAGAGATAGCTAGAGGTGCAAGAAGCCAAGTAGCTGCCTTATCAGTTATTATTTCATATAACGAGCTTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

258

Amino Acids

29.0

Weight (kDa)

8.54

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S_locus_glycop	PF00954	19 - 129	8.3e-29	S-locus glycoprotein domain
PAN_2	PF08276	150 - 218	1.1e-22	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27300
fragaria_vesca	FvH4_3g15930 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g21350 FvH4_3g21400 FvH4_3g21400 FvH4_6g12332
malus_domestica	MD02G1167100.v1.1 MD02G1167200.v1.1 MD03G1185600.v1.1 MD05G1213900.v1.1 MD05G1214100.v1.1 MD05G1214200.v1.1 MD05G1214700.v1.1 MD05G1216300.v1.1 MD05G1216800.v1.1 MD05G1217300.v1.1 MD05G1218000.v1.1 MD11G1231100.v1.1 MD11G1231200.v1.1 MD11G1231400.v1.1 MD11G1231500.v1.1 MD11G1232400.v1.1 MD11G1232500.v1.1
prunus_persica	Prupe.4G142300_v2.0.a1 Prupe.4G142400_v2.0.a1 Prupe.4G142500_v2.0.a1 Prupe.4G142600_v2.0.a1 Prupe.4G142800_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195100_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195500_v2.0.a1 Prupe.4G195700_v2.0.a1 Prupe.4G195900_v2.0.a1
pyrus_communis	pycom03g16540 pycom05g19920 pycom11g20460 pycom11g20480 pycom11g20490 pycom11g20500 pycom11g20530
rosa_chinensis	RchiOBHm_Chr2g0139311 RchiOBHm_Chr2g0139351 RchiOBHm_Chr5g0026801 RchiOBHm_Chr5g0026851 RchiOBHm_Chr5g0026891 RchiOBHm_Chr5g0026911 RchiOBHm_Chr5g0036571 RchiOBHm_Chr5g0036591 RchiOBHm_Chr5g0036721 RchiOBHm_Chr5g0036741 RchiOBHm_Chr7g0222981
rosa_laevigata	RLG00000002006 RLG00000019807 RLG00000032964 RLG00000032968 RLG00000032969 RLG00000033706 RLG00000033708 RLG00000033712 RLG00000033716
rosa_multiflora	Rmu_co8256651.1_g000001 Rmu_co8279377.1_g000001 Rmu_co8429919.1_g000001 Rmu_co8490103.1_g000001 Rmu_sc0000774.1_g000002 Rmu_sc0002525.1_g000012 Rmu_sc0004223.1_g000008 Rmu_sc0004390.1_g000002 Rmu_sc0006059.1_g000014 Rmu_sc0006059.1_g000024 Rmu_sc0006514.1_g000020 Rmu_sc0014333.1_g000002 Rmu_ssc0000172.1_g000018 Rmu_ssc0000172.1_g000029
rosa_roxburghii	Rroxscaffold_1G00044230 Rroxscaffold_1G00044260 Rroxscaffold_1G00044320 Rroxscaffold_1G00044340 Rroxscaffold_1G00052560 Rroxscaffold_1G00052570 Rroxscaffold_1G00052660 Rroxscaffold_1G00052720 Rroxscaffold_2G00105450 Rroxscaffold_2G00105460
rosa_rugosa	Rorug02G0356900 Rorug02G0357000 Rorug02G0357100 Rorug02G0357200 Rorug02G0357300 Rorug02G0357400 Rorug02G0357500 Rorug02G0357600 Rorug05G0095400 Rorug05G0095500 Rorug05G0095500 Rorug05G0095600 Rorug05G0095700 Rorug05G0095800 Rorug05G0157700 Rorug05G0157800
rosa_samantha	Rh2AG406800 Rh2AG406900 Rh2BG417300 Rh2CG392900 Rh2DG426200 Rh5AG189300 Rh5AG249400 Rh5AG250100 Rh5BG186300 Rh5BG186900 Rh5BG187000 Rh5BG249500 Rh5BG250600 Rh5BG250900 Rh5BG251500 Rh5BG251800 Rh5CG205500 Rh5CG206300 Rh5CG206700 Rh5CG283000 Rh5CG283300 Rh5CG283500 Rh5DG188500 Rh5DG188700 Rh5DG258700 Rh5DG258900 Rh5DG259600 Rh5DG259900 Rh7CG375800 Rh7DG352500
rosa_wichuraiana	Rw2G032960 Rw2G032970 Rw2G033220 Rw2G033230 Rw5G017130 Rw5G017230 Rw5G022940 Rw5G022960 Rw5G022980 Rw7G030420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	412, 473
AccB7I	CCANNNNNTGG	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	364
AccII	CGCG	2 cut(s)	226, 430
AccIII	TCCGGA	1 cut(s)	664
AcoI	YGGCCR	1 cut(s)	673
AcsI	RAATTY	3 cut(s)	50, 400, 479
AcuI	CTGAAG	1 cut(s)	687
AfaI	GTAC	5 cut(s)	167, 223, 282, 427, 532
AfiI	CCNNNNNNNGG	2 cut(s)	74, 671
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	5 cut(s)	176, 195, 248, 493, 565
AjnI	CCWGG	1 cut(s)	450
AloI	GAACNNNNNNTCC	2 cut(s)	557, 589
AluBI	AGCT	7 cut(s)	101, 447, 594, 701, 713, 737, 769
AluI	AGCT	7 cut(s)	101, 447, 594, 701, 713, 737, 769
Alw21I	GWGCWC	1 cut(s)	258
Aor13HI	TCCGGA	1 cut(s)	664
AoxI	GGCC	6 cut(s)	64, 76, 107, 267, 307, 673
ApeKI	GCWGC	5 cut(s)	95, 98, 447, 621, 737
ApoI	RAATTY	3 cut(s)	50, 400, 479
AspLEI	GCGC	4 cut(s)	95, 228, 432, 626
AspS9I	GGNCC	2 cut(s)	65, 267
AsuHPI	GGTGA	3 cut(s)	378, 532, 650
AsuII	TTCGAA	1 cut(s)	691
AxyI	CCTNAGG	1 cut(s)	21
BalI	TGGCCA	1 cut(s)	675
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	5 cut(s)	107, 110, 434, 608, 724
BccI	CCATC	1 cut(s)	237
BciT130I	CCWGG	1 cut(s)	452
BclI	TGATCA	1 cut(s)	298
BfaI	CTAG	3 cut(s)	285, 647, 714
BglII	AGATCT	1 cut(s)	679
BisI	GCNGC	5 cut(s)	96, 99, 448, 622, 738
BlsI	GCNGC	5 cut(s)	97, 100, 449, 623, 739
Bme1390I	CCNGG	1 cut(s)	452
BmgT120I	GGNCC	2 cut(s)	65, 267
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	452
BmsI	GCATC	1 cut(s)	658
Bpu10I	CCTNAGC	1 cut(s)	443
Bpu14I	TTCGAA	1 cut(s)	691
BsaJI	CCNNGG	1 cut(s)	68
BsaWI	WCCGGW	1 cut(s)	664
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 671
Bse1I	ACTGG	2 cut(s)	350, 416
Bse21I	CCTNAGG	1 cut(s)	21
BseAI	TCCGGA	1 cut(s)	664
BseBI	CCWGG	1 cut(s)	452
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	2 cut(s)	428, 673
BseLI	CCNNNNNNNGG	2 cut(s)	74, 671
BseMII	CTCAG	1 cut(s)	12
BseNI	ACTGG	2 cut(s)	350, 416
BseXI	GCAGC	5 cut(s)	107, 110, 434, 608, 724
Bsh1236I	CGCG	2 cut(s)	226, 430
BshFI	GGCC	6 cut(s)	66, 78, 109, 269, 309, 675
BsiHKAI	GWGCWC	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	665
BslI	CCNNNNNNNGG	2 cut(s)	74, 671
BsmI	GAATGC	1 cut(s)	551
BsnI	GGCC	6 cut(s)	66, 78, 109, 269, 309, 675
Bsp119I	TTCGAA	1 cut(s)	691
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp13I	TCCGGA	1 cut(s)	664
Bsp1407I	TGTACA	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	298, 640, 679
Bsp19I	CCATGG	1 cut(s)	68
BspANI	GGCC	6 cut(s)	66, 78, 109, 269, 309, 675
BspCNI	CTCAG	1 cut(s)	13
BspEI	TCCGGA	1 cut(s)	664
BspFNI	CGCG	2 cut(s)	226, 430
BspLI	GGNNCC	1 cut(s)	6
BspT104I	TTCGAA	1 cut(s)	691
BsrGI	TGTACA	1 cut(s)	165
BsrI	ACTGG	2 cut(s)	350, 416
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	3 cut(s)	298, 640, 679
BssT1I	CCWWGG	1 cut(s)	68
Bst2UI	CCWGG	1 cut(s)	452
Bst4CI	ACNGT	2 cut(s)	347, 572
BstAUI	TGTACA	1 cut(s)	165
BstBI	TTCGAA	1 cut(s)	691
BstC8I	GCNNGC	1 cut(s)	673
BstDEI	CTNAG	4 cut(s)	21, 80, 104, 443
BstDSI	CCRYGG	1 cut(s)	68
BstF5I	GGATG	2 cut(s)	428, 673
BstFNI	CGCG	2 cut(s)	226, 430
BstHHI	GCGC	4 cut(s)	95, 228, 432, 626
BstKTI	GATC	3 cut(s)	301, 643, 682
BstMBI	GATC	3 cut(s)	298, 640, 679
BstMWI	GCNNNNNNNGC	1 cut(s)	719
BstNI	CCWGG	1 cut(s)	452
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	450
BstUI	CGCG	2 cut(s)	226, 430
BstV1I	GCAGC	5 cut(s)	107, 110, 434, 608, 724
BstX2I	RGATCY	1 cut(s)	679
BstXI	CCANNNNNNTGG	1 cut(s)	396
BstYI	RGATCY	1 cut(s)	679
Bsu36I	CCTNAGG	1 cut(s)	21
BsuRI	GGCC	6 cut(s)	66, 78, 109, 269, 309, 675
BtgI	CCRYGG	1 cut(s)	68
BtgZI	GCGATG	1 cut(s)	215
BtsCI	GGATG	2 cut(s)	428, 673
BtsIMutI	CAGTG	2 cut(s)	94, 483
Cac8I	GCNNGC	1 cut(s)	673
CfoI	GCGC	4 cut(s)	95, 228, 432, 626
Cfr13I	GGNCC	2 cut(s)	65, 267
Csp6I	GTAC	5 cut(s)	166, 222, 281, 426, 531
CviAII	CATG	4 cut(s)	11, 69, 163, 240
CviQI	GTAC	5 cut(s)	166, 222, 281, 426, 531
DdeI	CTNAG	4 cut(s)	21, 80, 104, 443
DpnI	GATC	3 cut(s)	300, 642, 681
DpnII	GATC	3 cut(s)	298, 640, 679
DrdI	GACNNNNNNGTC	2 cut(s)	412, 473
DseDI	GACNNNNNNGTC	2 cut(s)	412, 473
EaeI	YGGCCR	1 cut(s)	673
Eco130I	CCWWGG	1 cut(s)	68
Eco147I	AGGCCT	1 cut(s)	109
Eco32I	GATATC	1 cut(s)	652
Eco57I	CTGAAG	1 cut(s)	687
Eco81I	CCTNAGG	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	267
EcoRII	CCWGG	1 cut(s)	450
EcoRV	GATATC	1 cut(s)	652
EcoT14I	CCWWGG	1 cut(s)	68
EcoT22I	ATGCAT	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	4 cut(s)	14, 72, 166, 243
FatI	CATG	4 cut(s)	10, 68, 162, 239
FbaI	TGATCA	1 cut(s)	298
FblI	GTMKAC	1 cut(s)	364
Fnu4HI	GCNGC	5 cut(s)	96, 99, 448, 622, 738
FokI	GGATG	2 cut(s)	435, 680
Fsp4HI	GCNGC	5 cut(s)	96, 99, 448, 622, 738
FspBI	CTAG	3 cut(s)	285, 647, 714
GlaI	GCGC	4 cut(s)	94, 227, 431, 625
GluI	GCNGC	5 cut(s)	96, 99, 448, 622, 738
HaeIII	GGCC	6 cut(s)	66, 78, 109, 269, 309, 675
HapII	CCGG	1 cut(s)	665
HhaI	GCGC	4 cut(s)	95, 228, 432, 626
Hin1II	CATG	4 cut(s)	14, 72, 166, 243
Hin6I	GCGC	4 cut(s)	93, 226, 430, 624
HinP1I	GCGC	4 cut(s)	93, 226, 430, 624
HinfI	GANTC	3 cut(s)	84, 372, 661
HpaII	CCGG	1 cut(s)	665
HphI	GGTGA	3 cut(s)	378, 532, 650
Hpy166II	GTNNAC	3 cut(s)	157, 365, 523
Hpy188I	TCNGA	5 cut(s)	36, 48, 598, 656, 706
Hpy188III	TCNNGA	1 cut(s)	665
Hpy8I	GTNNAC	3 cut(s)	157, 365, 523
Hpy99I	CGWCG	1 cut(s)	220
HpyCH4III	ACNGT	2 cut(s)	347, 572
HpyCH4V	TGCA	6 cut(s)	14, 139, 275, 326, 549, 722
HpyF10VI	GCNNNNNNNGC	1 cut(s)	719
HpyF3I	CTNAG	4 cut(s)	21, 80, 104, 443
Hsp92II	CATG	4 cut(s)	14, 72, 166, 243
HspAI	GCGC	4 cut(s)	93, 226, 430, 624
Kpn2I	TCCGGA	1 cut(s)	664
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	3 cut(s)	298, 640, 679
LmnI	GCTCC	1 cut(s)	317
Lsp1109I	GCAGC	5 cut(s)	107, 110, 434, 608, 724
LweI	GCATC	1 cut(s)	658
MaeI	CTAG	3 cut(s)	285, 647, 714
MaeIII	GTNAC	3 cut(s)	341, 384, 414
MalI	GATC	3 cut(s)	300, 642, 681
MboI	GATC	3 cut(s)	298, 640, 679
MflI	RGATCY	1 cut(s)	679
MhlI	GDGCHC	1 cut(s)	258
MlsI	TGGCCA	1 cut(s)	675
MluCI	AATT	6 cut(s)	50, 117, 189, 400, 479, 494
MluNI	TGGCCA	1 cut(s)	675
MnlI	CCTC	6 cut(s)	16, 18, 258, 320, 605, 710
Mox20I	TGGCCA	1 cut(s)	675
Mph1103I	ATGCAT	1 cut(s)	16
MroI	TCCGGA	1 cut(s)	664
MscI	TGGCCA	1 cut(s)	675
MseI	TTAA	2 cut(s)	206, 603
MslI	CAYNNNNRTG	3 cut(s)	144, 421, 692
Msp20I	TGGCCA	1 cut(s)	675
MspI	CCGG	1 cut(s)	665
MspR9I	CCNGG	1 cut(s)	452
Mva1269I	GAATGC	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	452
MvnI	CGCG	2 cut(s)	226, 430
MwoI	GCNNNNNNNGC	1 cut(s)	719
NcoI	CCATGG	1 cut(s)	68
NdeII	GATC	3 cut(s)	298, 640, 679
NlaIII	CATG	4 cut(s)	14, 72, 166, 243
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	384, 414
NsiI	ATGCAT	1 cut(s)	16
NspI	RCATGY	1 cut(s)	166
NspV	TTCGAA	1 cut(s)	691
PceI	AGGCCT	1 cut(s)	109
PciI	ACATGT	1 cut(s)	162
PctI	GAATGC	1 cut(s)	551
PfeI	GAWTC	3 cut(s)	84, 372, 661
PflMI	CCANNNNNTGG	1 cut(s)	74
PkrI	GCNGC	5 cut(s)	97, 100, 449, 623, 739
PscI	ACATGT	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	450
PspGI	CCWGG	1 cut(s)	450
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	65, 267
PsrI	GAACNNNNNNTAC	2 cut(s)	205, 237
PsuI	RGATCY	1 cut(s)	679
RsaI	GTAC	5 cut(s)	167, 223, 282, 427, 532
RsaNI	GTAC	5 cut(s)	166, 222, 281, 426, 531
RseI	CAYNNNNRTG	3 cut(s)	144, 421, 692
SaqAI	TTAA	2 cut(s)	206, 603
SatI	GCNGC	5 cut(s)	96, 99, 448, 622, 738
Sau3AI	GATC	3 cut(s)	298, 640, 679
Sau96I	GGNCC	2 cut(s)	65, 267
ScrFI	CCNGG	1 cut(s)	452
SduI	GDGCHC	1 cut(s)	258
SfaNI	GCATC	1 cut(s)	658
SfuI	TTCGAA	1 cut(s)	691
SmiMI	CAYNNNNRTG	3 cut(s)	144, 421, 692
Sse9I	AATT	6 cut(s)	50, 117, 189, 400, 479, 494
SseBI	AGGCCT	1 cut(s)	109
SspMI	CTAG	3 cut(s)	285, 647, 714
StuI	AGGCCT	1 cut(s)	109
StyD4I	CCNGG	1 cut(s)	450
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	2 cut(s)	347, 572
TaqI	TCGA	2 cut(s)	129, 691
TasI	AATT	6 cut(s)	50, 117, 189, 400, 479, 494
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	3 cut(s)	84, 372, 661
Tru1I	TTAA	2 cut(s)	206, 603
Tru9I	TTAA	2 cut(s)	206, 603
TscAI	CASTG	2 cut(s)	94, 490
TseFI	GTSAC	2 cut(s)	384, 414
TseI	GCWGC	5 cut(s)	95, 98, 447, 621, 737
Tsp45I	GTSAC	2 cut(s)	384, 414
TspDTI	ATGAA	2 cut(s)	165, 747
TspRI	CASTG	2 cut(s)	94, 490
Van91I	CCANNNNNTGG	1 cut(s)	74
XapI	RAATTY	3 cut(s)	50, 400, 479
XceI	RCATGY	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	364
XspI	CTAG	3 cut(s)	285, 647, 714
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.