divergent subfamily of APPLE domains
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| tRNA-synt_2b | PF00587 | 22 - 167 | 4.5e-14 | tRNA synthetase class II core domain (G, H, P, S and T) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 462 |
| AccI | GTMKAC | 1 cut(s) | 370 |
| AciI | CCGC | 1 cut(s) | 269 |
| AcoI | YGGCCR | 1 cut(s) | 361 |
| AcsI | RAATTY | 2 cut(s) | 308, 403 |
| AfaI | GTAC | 1 cut(s) | 242 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 359, 462 |
| AleI | CACNNNNGTG | 1 cut(s) | 335 |
| AluBI | AGCT | 2 cut(s) | 238, 301 |
| AluI | AGCT | 2 cut(s) | 238, 301 |
| Alw21I | GWGCWC | 2 cut(s) | 132, 322 |
| Alw26I | GTCTC | 2 cut(s) | 11, 51 |
| AoxI | GGCC | 4 cut(s) | 32, 178, 361, 453 |
| ApoI | RAATTY | 2 cut(s) | 308, 403 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 413, 445 |
| AsuHPI | GGTGA | 2 cut(s) | 68, 121 |
| BbsI | GAAGAC | 1 cut(s) | 299 |
| Bbv12I | GWGCWC | 2 cut(s) | 132, 322 |
| BccI | CCATC | 1 cut(s) | 43 |
| BcoDI | GTCTC | 2 cut(s) | 11, 51 |
| BfaI | CTAG | 1 cut(s) | 60 |
| BmiI | GGNNCC | 1 cut(s) | 273 |
| BpiI | GAAGAC | 1 cut(s) | 299 |
| BpmI | CTGGAG | 1 cut(s) | 33 |
| BpuEI | CTTGAG | 1 cut(s) | 323 |
| BsaJI | CCNNGG | 3 cut(s) | 198, 364, 456 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 359, 462 |
| Bse118I | RCCGGY | 2 cut(s) | 314, 359 |
| Bse1I | ACTGG | 3 cut(s) | 103, 275, 333 |
| BseDI | CCNNGG | 3 cut(s) | 198, 364, 456 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 359, 462 |
| BseNI | ACTGG | 3 cut(s) | 103, 275, 333 |
| BsgI | GTGCAG | 1 cut(s) | 242 |
| BshFI | GGCC | 4 cut(s) | 34, 180, 363, 455 |
| BsiHKAI | GWGCWC | 2 cut(s) | 132, 322 |
| BsiSI | CCGG | 2 cut(s) | 315, 360 |
| BslFI | GGGAC | 1 cut(s) | 300 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 359, 462 |
| BsmAI | GTCTC | 2 cut(s) | 11, 51 |
| BsmFI | GGGAC | 1 cut(s) | 300 |
| BsnI | GGCC | 4 cut(s) | 34, 180, 363, 455 |
| Bsp1286I | GDGCHC | 2 cut(s) | 132, 322 |
| Bsp1407I | TGTACA | 1 cut(s) | 240 |
| Bsp143I | GATC | 1 cut(s) | 211 |
| Bsp19I | CCATGG | 1 cut(s) | 456 |
| BspACI | CCGC | 1 cut(s) | 269 |
| BspANI | GGCC | 4 cut(s) | 34, 180, 363, 455 |
| BspHI | TCATGA | 1 cut(s) | 214 |
| BspLI | GGNNCC | 1 cut(s) | 273 |
| BsrFI | RCCGGY | 2 cut(s) | 314, 359 |
| BsrGI | TGTACA | 1 cut(s) | 240 |
| BsrI | ACTGG | 3 cut(s) | 103, 275, 333 |
| BssAI | RCCGGY | 2 cut(s) | 314, 359 |
| BssECI | CCNNGG | 3 cut(s) | 198, 364, 456 |
| BssMI | GATC | 1 cut(s) | 211 |
| BssNAI | GTATAC | 1 cut(s) | 371 |
| BssT1I | CCWWGG | 2 cut(s) | 198, 456 |
| Bst1107I | GTATAC | 1 cut(s) | 371 |
| Bst4CI | ACNGT | 1 cut(s) | 368 |
| Bst6I | CTCTTC | 1 cut(s) | 198 |
| BstAUI | TGTACA | 1 cut(s) | 240 |
| BstC8I | GCNNGC | 1 cut(s) | 361 |
| BstDSI | CCRYGG | 2 cut(s) | 364, 456 |
| BstKTI | GATC | 1 cut(s) | 214 |
| BstMAI | GTCTC | 2 cut(s) | 11, 51 |
| BstMBI | GATC | 1 cut(s) | 211 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 94 |
| BstNSI | RCATGY | 1 cut(s) | 46 |
| BstV2I | GAAGAC | 1 cut(s) | 299 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 337 |
| BstZ17I | GTATAC | 1 cut(s) | 371 |
| BsuRI | GGCC | 4 cut(s) | 34, 180, 363, 455 |
| BtgI | CCRYGG | 2 cut(s) | 364, 456 |
| BtsI | GCAGTG | 1 cut(s) | 183 |
| BtsIMutI | CAGTG | 3 cut(s) | 110, 183, 340 |
| Cac8I | GCNNGC | 1 cut(s) | 361 |
| CciI | TCATGA | 1 cut(s) | 214 |
| Cfr10I | RCCGGY | 2 cut(s) | 314, 359 |
| Csp6I | GTAC | 1 cut(s) | 241 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 86, 121 |
| CviAII | CATG | 4 cut(s) | 39, 43, 215, 457 |
| CviJI | RGCY | 8 cut(s) | 34, 180, 238, 301, 344, 363, 455, 479 |
| CviKI_1 | RGCY | 8 cut(s) | 34, 180, 238, 301, 344, 363, 455, 479 |
| CviQI | GTAC | 1 cut(s) | 241 |
| DpnI | GATC | 1 cut(s) | 213 |
| DpnII | GATC | 1 cut(s) | 211 |
| EaeI | YGGCCR | 1 cut(s) | 361 |
| Eam1104I | CTCTTC | 1 cut(s) | 198 |
| EarI | CTCTTC | 1 cut(s) | 198 |
| Eco130I | CCWWGG | 2 cut(s) | 198, 456 |
| EcoT14I | CCWWGG | 2 cut(s) | 198, 456 |
| EcoT22I | ATGCAT | 1 cut(s) | 44 |
| ErhI | CCWWGG | 2 cut(s) | 198, 456 |
| FaeI | CATG | 4 cut(s) | 42, 46, 218, 460 |
| FaiI | YATR | 8 cut(s) | 40, 44, 91, 216, 253, 255, 371, 458 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 150, 182 |
| FaqI | GGGAC | 1 cut(s) | 300 |
| FatI | CATG | 4 cut(s) | 38, 42, 214, 456 |
| FblI | GTMKAC | 1 cut(s) | 370 |
| FspBI | CTAG | 1 cut(s) | 60 |
| GsuI | CTGGAG | 1 cut(s) | 33 |
| HaeIII | GGCC | 4 cut(s) | 34, 180, 363, 455 |
| HapII | CCGG | 2 cut(s) | 315, 360 |
| Hin1II | CATG | 4 cut(s) | 42, 46, 218, 460 |
| HinfI | GANTC | 2 cut(s) | 66, 73 |
| HpaII | CCGG | 2 cut(s) | 315, 360 |
| HphI | GGTGA | 2 cut(s) | 68, 121 |
| Hpy166II | GTNNAC | 1 cut(s) | 371 |
| Hpy188I | TCNGA | 1 cut(s) | 19 |
| Hpy188III | TCNNGA | 5 cut(s) | 50, 60, 70, 151, 215 |
| Hpy8I | GTNNAC | 1 cut(s) | 371 |
| HpyAV | CCTTC | 2 cut(s) | 170, 277 |
| HpyCH4III | ACNGT | 1 cut(s) | 368 |
| HpyCH4IV | ACGT | 1 cut(s) | 428 |
| HpyCH4V | TGCA | 5 cut(s) | 13, 42, 194, 223, 445 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 94 |
| HpySE526I | ACGT | 1 cut(s) | 428 |
| Hsp92II | CATG | 4 cut(s) | 42, 46, 218, 460 |
| KroI | GCCGGC | 1 cut(s) | 359 |
| KroNI | GCCGGC | 1 cut(s) | 361 |
| Kzo9I | GATC | 1 cut(s) | 211 |
| LmnI | GCTCC | 2 cut(s) | 127, 235 |
| LpnPI | CCDG | 9 cut(s) | 55, 63, 116, 136, 209, 288, 328, 346, 373 |
| MaeI | CTAG | 1 cut(s) | 60 |
| MaeII | ACGT | 1 cut(s) | 428 |
| MaeIII | GTNAC | 1 cut(s) | 74 |
| MalI | GATC | 1 cut(s) | 213 |
| MboI | GATC | 1 cut(s) | 211 |
| MboII | GAAGA | 3 cut(s) | 75, 215, 304 |
| MhlI | GDGCHC | 2 cut(s) | 132, 322 |
| MluCI | AATT | 2 cut(s) | 308, 403 |
| MlyI | GAGTC | 1 cut(s) | 82 |
| MmeI | TCCRAC | 2 cut(s) | 42, 213 |
| MnlI | CCTC | 6 cut(s) | 24, 199, 211, 250, 334, 394 |
| Mph1103I | ATGCAT | 1 cut(s) | 44 |
| MroNI | GCCGGC | 1 cut(s) | 359 |
| MslI | CAYNNNNRTG | 1 cut(s) | 335 |
| MspI | CCGG | 2 cut(s) | 315, 360 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 94 |
| NaeI | GCCGGC | 1 cut(s) | 361 |
| NcoI | CCATGG | 1 cut(s) | 456 |
| NdeII | GATC | 1 cut(s) | 211 |
| NgoMIV | GCCGGC | 1 cut(s) | 359 |
| NlaIII | CATG | 4 cut(s) | 42, 46, 218, 460 |
| NlaIV | GGNNCC | 1 cut(s) | 273 |
| NmuCI | GTSAC | 1 cut(s) | 74 |
| NsiI | ATGCAT | 1 cut(s) | 44 |
| NspI | RCATGY | 1 cut(s) | 46 |
| OliI | CACNNNNGTG | 1 cut(s) | 335 |
| PagI | TCATGA | 1 cut(s) | 214 |
| PdiI | GCCGGC | 1 cut(s) | 361 |
| PfeI | GAWTC | 1 cut(s) | 66 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 462 |
| PleI | GAGTC | 1 cut(s) | 81 |
| PpsI | GAGTC | 1 cut(s) | 81 |
| PspN4I | GGNNCC | 1 cut(s) | 273 |
| RsaI | GTAC | 1 cut(s) | 242 |
| RsaNI | GTAC | 1 cut(s) | 241 |
| RseI | CAYNNNNRTG | 1 cut(s) | 335 |
| Sau3AI | GATC | 1 cut(s) | 211 |
| SchI | GAGTC | 1 cut(s) | 82 |
| SduI | GDGCHC | 2 cut(s) | 132, 322 |
| SetI | ASST | 7 cut(s) | 81, 222, 240, 303, 379, 386, 431 |
| SgrAI | CRCCGGYG | 1 cut(s) | 314 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 335 |
| SmlI | CTYRAG | 1 cut(s) | 302 |
| SmoI | CTYRAG | 1 cut(s) | 302 |
| Sse9I | AATT | 2 cut(s) | 308, 403 |
| SsiI | CCGC | 1 cut(s) | 269 |
| SspI | AATATT | 1 cut(s) | 263 |
| SspMI | CTAG | 1 cut(s) | 60 |
| StyI | CCWWGG | 2 cut(s) | 198, 456 |
| TaaI | ACNGT | 1 cut(s) | 368 |
| TaiI | ACGT | 1 cut(s) | 431 |
| TaqI | TCGA | 1 cut(s) | 490 |
| TaqII | GACCGA | 1 cut(s) | 311 |
| TasI | AATT | 2 cut(s) | 308, 403 |
| TatI | WGTACW | 1 cut(s) | 240 |
| TfiI | GAWTC | 1 cut(s) | 66 |
| TscAI | CASTG | 3 cut(s) | 110, 190, 340 |
| TseFI | GTSAC | 1 cut(s) | 74 |
| Tsp45I | GTSAC | 1 cut(s) | 74 |
| TspDTI | ATGAA | 1 cut(s) | 453 |
| TspRI | CASTG | 3 cut(s) | 110, 190, 340 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 462 |
| XapI | RAATTY | 2 cut(s) | 308, 403 |
| XbaI | TCTAGA | 1 cut(s) | 59 |
| XceI | RCATGY | 1 cut(s) | 46 |
| XmiI | GTMKAC | 1 cut(s) | 370 |
| XspI | CTAG | 1 cut(s) | 60 |
| Zsp2I | ATGCAT | 1 cut(s) | 44 |