Rorug05G0095600

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000207
Physical Location & Seq
Forward (+)
8508512 .. 8513678
5167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0095600.1

Sequence Viewer

Length: 1494 bp
ATGGAAACAGACACAGACACAGATACATTGGGGCATCTCACTACCAAACAAGTCAAGATTGTGGTGCTTATCACAAGTACAGATCAAATGCCATCTTTAAAAATGAAGGCTCAATCAAGCACAGGATGTTTAAAAGAGAAAAATGCTCATCGTGTATGTCAAAAGTCATGTGTGATTTCCAAGCAAGCATGTTCTTATGTGAAGAGATCTGAATATACGACAGATTTCAACTCTTGTAAATGTCAGGCGGTTTCTTCGAGCACCCAAGTTTCTACGAAGGAAAATGGAAGTGGTGAAGCAATTGACGAGCTTGATGAAGAAGATTATAAAATTCTGATTCAGTCATGCGATTCTCCAACCAAAAGAGCGGAATCCTTCCCCACCTGCCCGTCAAACTTGGAGACAATTTTCTCTCCTTCTTTTGACCCAATTGAAGTTCGTAGCGAAGCAAATAGTGAACCAAATGCAGAGAATGATGCAGGGTTGGGAGCTGGTGACAGTGATGATAACAGAAGTTCATGTGACAATCAAAGTTGTGATGTTTCAGATTTCTACATATCTGATATGATCATTTCGAGCTTACCCTTCAGTGGGGATGCATTTACTGATGATATTTGTGAAACGAATTGCTTTCCGGACTACAAATGTGCTGAATCAAACATCTTGTTTGATGTTTCCGAGCAATACATGGTATTGCCTTTCCTAGAAGACACTGTCCGAAATAGTAATACTAATACTCTTGATGATAAATTATGTCAAGAAGCTGTTATGGATACAGATCGGGCTGGCTTGTATTTAGAAATGGGTCAAATGAGACCCTGCCACCAGGATACTGTTGTTAACTCTTCTGACTCAGATCAGGCAGAGTGCTTCGATCCACAGTTGTTTATAAAAAACTTACCAGAATTATCAGATGTGGTATCGAACTTTCAACCCAATATATTGCCTGAGGAAGCTTCAAAAAGCAAGTCTGTAACTCTTGTACTTGATTTGGATGAAACACTGGTTCATTCTACATTAGAACATTGCGATGACGCAGACTTCACATTTACTGTCTTTTTCAACATGAAAGAGCACATGGTATATGTGAAACAGAGGCCATACCTCCAAACATTCTTGGAGCGAGTTGCAGAAATGTTTGATGTTGTTATTTTCACTGCCAGCCAAAGCATATATGCCGAGCAACTTCTTGATATATTGGATCCATATCGAAAGTTCATAACTCGCCGAGTTTATCGTGAATCATGCATTTTTACAGATGGCAGTTACACTAAAGATCTGACAGTCTTGGGGGTTGATCTTGCAAAAGTTGCCATTATTGATAATACTCCACAGGTTTTCCGCTTGCAAGTCAATAATGGAATTCCCATAAAGAGTTGGTTTGATGATCCGTCCGACAGTGCATTGATTTCATTACTTCCTTTCTTAGAGACCCTGGTTAATGCTGATGATGTCCGCCCCATAATTGCCAAGAAATTCGGTAACAAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

497

Amino Acids

55.65

Weight (kDa)

4.39

Isoelectric Point (pI)

49.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 326 - 486 6.4e-57 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27300
fragaria_vesca FvH4_3g15930 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g21350 FvH4_3g21400 FvH4_3g21400 FvH4_6g12332
malus_domestica MD02G1167100.v1.1 MD02G1167200.v1.1 MD03G1185600.v1.1 MD05G1213900.v1.1 MD05G1214100.v1.1 MD05G1214200.v1.1 MD05G1214700.v1.1 MD05G1216300.v1.1 MD05G1216800.v1.1 MD05G1217300.v1.1 MD05G1218000.v1.1 MD11G1231100.v1.1 MD11G1231200.v1.1 MD11G1231400.v1.1 MD11G1231500.v1.1 MD11G1232400.v1.1 MD11G1232500.v1.1
prunus_persica Prupe.4G142300_v2.0.a1 Prupe.4G142400_v2.0.a1 Prupe.4G142500_v2.0.a1 Prupe.4G142600_v2.0.a1 Prupe.4G142800_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195100_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195500_v2.0.a1 Prupe.4G195700_v2.0.a1 Prupe.4G195900_v2.0.a1
pyrus_communis pycom03g16540 pycom05g19920 pycom11g20460 pycom11g20480 pycom11g20490 pycom11g20500 pycom11g20530
rosa_chinensis RchiOBHm_Chr2g0139311 RchiOBHm_Chr2g0139351 RchiOBHm_Chr5g0026801 RchiOBHm_Chr5g0026851 RchiOBHm_Chr5g0026891 RchiOBHm_Chr5g0026911 RchiOBHm_Chr5g0036571 RchiOBHm_Chr5g0036591 RchiOBHm_Chr5g0036721 RchiOBHm_Chr5g0036741 RchiOBHm_Chr7g0222981
rosa_laevigata RLG00000002006 RLG00000019807 RLG00000032964 RLG00000032968 RLG00000032969 RLG00000033706 RLG00000033708 RLG00000033712 RLG00000033716
rosa_multiflora Rmu_co8256651.1_g000001 Rmu_co8279377.1_g000001 Rmu_co8429919.1_g000001 Rmu_co8490103.1_g000001 Rmu_sc0000774.1_g000002 Rmu_sc0002525.1_g000012 Rmu_sc0004223.1_g000008 Rmu_sc0004390.1_g000002 Rmu_sc0006059.1_g000014 Rmu_sc0006059.1_g000024 Rmu_sc0006514.1_g000020 Rmu_sc0014333.1_g000002 Rmu_ssc0000172.1_g000018 Rmu_ssc0000172.1_g000029
rosa_roxburghii Rroxscaffold_1G00044230 Rroxscaffold_1G00044260 Rroxscaffold_1G00044320 Rroxscaffold_1G00044340 Rroxscaffold_1G00052560 Rroxscaffold_1G00052570 Rroxscaffold_1G00052660 Rroxscaffold_1G00052720 Rroxscaffold_2G00105450 Rroxscaffold_2G00105460
rosa_rugosa Rorug02G0356900 Rorug02G0357000 Rorug02G0357100 Rorug02G0357200 Rorug02G0357300 Rorug02G0357400 Rorug02G0357500 Rorug02G0357600 Rorug05G0095400 Rorug05G0095500 Rorug05G0095500 Rorug05G0095600 Rorug05G0095700 Rorug05G0095800 Rorug05G0157700 Rorug05G0157800
rosa_samantha Rh2AG406800 Rh2AG406900 Rh2BG417300 Rh2CG392900 Rh2DG426200 Rh5AG189300 Rh5AG249400 Rh5AG250100 Rh5BG186300 Rh5BG186900 Rh5BG187000 Rh5BG249500 Rh5BG250600 Rh5BG250900 Rh5BG251500 Rh5BG251800 Rh5CG205500 Rh5CG206300 Rh5CG206700 Rh5CG283000 Rh5CG283300 Rh5CG283500 Rh5DG188500 Rh5DG188700 Rh5DG258700 Rh5DG258900 Rh5DG259600 Rh5DG259900 Rh7CG375800 Rh7DG352500
rosa_wichuraiana Rw2G032960 Rw2G032970 Rw2G033220 Rw2G033230 Rw5G017130 Rw5G017230 Rw5G022940 Rw5G022960 Rw5G022980 Rw7G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 327, 890
AarI CACCTGC 1 cut(s) 392
Acc36I ACCTGC 1 cut(s) 392
AccBSI CCGCTC 1 cut(s) 368
AccIII TCCGGA 1 cut(s) 634
AciI CCGC 4 cut(s) 248, 368, 1342, 1456
AclWI GGATC 4 cut(s) 869, 1196, 1209, 1382
AcsI RAATTY 3 cut(s) 330, 1362, 1475
AcuI CTGAAG 1 cut(s) 571
AfaI GTAC 2 cut(s) 79, 984
AfiI CCNNNNNNNGG 2 cut(s) 590, 591
AgsI TTSAA 5 cut(s) 229, 434, 932, 960, 1063
AjnI CCWGG 2 cut(s) 825, 1434
AluBI AGCT 5 cut(s) 310, 491, 579, 764, 956
AluI AGCT 5 cut(s) 310, 491, 579, 764, 956
Alw21I GWGCWC 2 cut(s) 263, 1077
Alw26I GTCTC 3 cut(s) 395, 808, 1424
AlwI GGATC 4 cut(s) 869, 1196, 1209, 1382
Aor13HI TCCGGA 1 cut(s) 634
AoxI GGCC 1 cut(s) 1097
ApoI RAATTY 3 cut(s) 330, 1362, 1475
ArsI GACNNNNNNTTYG 2 cut(s) 953, 985
AsuHPI GGTGA 2 cut(s) 305, 506
AxyI CCTNAGG 1 cut(s) 948
BaeI ACNNNNGTAYC 2 cut(s) 822, 855
BamHI GGATCC 1 cut(s) 1201
BbsI GAAGAC 1 cut(s) 714
Bbv12I GWGCWC 2 cut(s) 263, 1077
BccI CCATC 2 cut(s) 100, 1253
BciT130I CCWGG 2 cut(s) 827, 1436
BciVI GTATCC 2 cut(s) 766, 823
BclI TGATCA 1 cut(s) 567
BcoDI GTCTC 3 cut(s) 395, 808, 1424
BfaI CTAG 1 cut(s) 704
BfuAI ACCTGC 1 cut(s) 392
BfuI GTATCC 2 cut(s) 766, 823
BglII AGATCT 2 cut(s) 206, 1276
Bme1390I CCNGG 2 cut(s) 827, 1436
BmiI GGNNCC 1 cut(s) 1203
BmrFI CCNGG 2 cut(s) 827, 1436
BmsI GCATC 3 cut(s) 43, 466, 586
BpiI GAAGAC 1 cut(s) 714
BsaBI GATNNNNATC 2 cut(s) 777, 1206
BsaI GGTCTC 2 cut(s) 808, 1424
BsaJI CCNNGG 1 cut(s) 1434
BsaWI WCCGGW 1 cut(s) 634
Bsc4I CCNNNNNNNGG 2 cut(s) 590, 591
Bse1I ACTGG 1 cut(s) 1008
Bse21I CCTNAGG 1 cut(s) 948
Bse3DI GCAATG 1 cut(s) 1024
Bse8I GATNNNNATC 2 cut(s) 777, 1206
BseAI TCCGGA 1 cut(s) 634
BseBI CCWGG 2 cut(s) 827, 1436
BseDI CCNNGG 1 cut(s) 1434
BseGI GGATG 3 cut(s) 131, 601, 1000
BseJI GATNNNNATC 2 cut(s) 777, 1206
BseLI CCNNNNNNNGG 2 cut(s) 590, 591
BseMI GCAATG 1 cut(s) 1024
BseMII CTCAG 2 cut(s) 867, 939
BseNI ACTGG 1 cut(s) 1008
BshFI GGCC 1 cut(s) 1099
BsiHKAI GWGCWC 2 cut(s) 263, 1077
BsiSI CCGG 1 cut(s) 635
BslI CCNNNNNNNGG 2 cut(s) 590, 591
BsmAI GTCTC 3 cut(s) 395, 808, 1424
BsnI GGCC 1 cut(s) 1099
Bso31I GGTCTC 2 cut(s) 808, 1424
Bsp1286I GDGCHC 2 cut(s) 263, 1077
Bsp13I TCCGGA 1 cut(s) 634
BspACI CCGC 4 cut(s) 248, 368, 1342, 1456
BspANI GGCC 1 cut(s) 1099
BspCNI CTCAG 2 cut(s) 866, 940
BspEI TCCGGA 1 cut(s) 634
BspLI GGNNCC 1 cut(s) 1203
BspMI ACCTGC 1 cut(s) 392
BspPI GGATC 4 cut(s) 869, 1196, 1209, 1382
BspTNI GGTCTC 2 cut(s) 808, 1424
BsrBI CCGCTC 1 cut(s) 368
BsrDI GCAATG 1 cut(s) 1024
BsrI ACTGG 1 cut(s) 1008
BssECI CCNNGG 1 cut(s) 1434
Bst2UI CCWGG 2 cut(s) 827, 1436
Bst4CI ACNGT 7 cut(s) 500, 715, 835, 882, 1054, 1285, 1400
Bst6I CTCTTC 2 cut(s) 197, 850
BstAPI GCANNNNNTGC 1 cut(s) 1310
BstC8I GCNNGC 4 cut(s) 186, 787, 1162, 1346
BstDEI CTNAG 3 cut(s) 853, 948, 1426
BstF5I GGATG 3 cut(s) 131, 601, 1000
BstMAI GTCTC 3 cut(s) 395, 808, 1424
BstMWI GCNNNNNNNGC 1 cut(s) 1310
BstNI CCWGG 2 cut(s) 827, 1436
BstNSI RCATGY 1 cut(s) 192
BstSCI CCNGG 2 cut(s) 825, 1434
BstV2I GAAGAC 1 cut(s) 714
BstX2I RGATCY 3 cut(s) 206, 1201, 1276
BstYI RGATCY 3 cut(s) 206, 1201, 1276
Bsu36I CCTNAGG 1 cut(s) 948
BsuI GTATCC 2 cut(s) 766, 823
BsuRI GGCC 1 cut(s) 1099
BtgZI GCGATG 1 cut(s) 1044
BtsCI GGATG 3 cut(s) 131, 601, 1000
BtsI GCAGTG 1 cut(s) 1155
BtsIMutI CAGTG 6 cut(s) 505, 595, 711, 1001, 1155, 1405
BveI ACCTGC 1 cut(s) 392
Cac8I GCNNGC 4 cut(s) 186, 787, 1162, 1346
CseI GACGC 1 cut(s) 1043
Csp6I GTAC 2 cut(s) 78, 983
CviAII CATG 8 cut(s) 168, 189, 345, 519, 688, 1066, 1078, 1245
CviQI GTAC 2 cut(s) 78, 983
DdeI CTNAG 3 cut(s) 853, 948, 1426
DraI TTTAAA 2 cut(s) 99, 132
Eam1104I CTCTTC 2 cut(s) 197, 850
EarI CTCTTC 2 cut(s) 197, 850
EciI GGCGGA 1 cut(s) 1445
Eco31I GGTCTC 2 cut(s) 808, 1424
Eco57I CTGAAG 1 cut(s) 571
Eco81I CCTNAGG 1 cut(s) 948
EcoRI GAATTC 1 cut(s) 1362
EcoRII CCWGG 2 cut(s) 825, 1434
EcoT22I ATGCAT 2 cut(s) 601, 1250
FaeI CATG 8 cut(s) 171, 192, 348, 522, 691, 1069, 1081, 1248
FatI CATG 8 cut(s) 167, 188, 344, 518, 687, 1065, 1077, 1244
FbaI TGATCA 1 cut(s) 567
FokI GGATG 3 cut(s) 138, 608, 1007
FspBI CTAG 1 cut(s) 704
HaeIII GGCC 1 cut(s) 1099
HapII CCGG 1 cut(s) 635
HgaI GACGC 1 cut(s) 1043
Hin1II CATG 8 cut(s) 171, 192, 348, 522, 691, 1069, 1081, 1248
HincII GTYRAC 1 cut(s) 841
HindII GTYRAC 1 cut(s) 841
HindIII AAGCTT 1 cut(s) 954
HinfI GANTC 6 cut(s) 337, 350, 371, 653, 851, 1241
HpaI GTTAAC 1 cut(s) 841
HpaII CCGG 1 cut(s) 635
HphI GGTGA 2 cut(s) 305, 506
Hpy166II GTNNAC 2 cut(s) 458, 841
Hpy188III TCNNGA 6 cut(s) 55, 635, 740, 758, 1190, 1238
Hpy8I GTNNAC 2 cut(s) 458, 841
HpyAV CCTTC 5 cut(s) 100, 271, 385, 426, 595
HpyCH4III ACNGT 7 cut(s) 500, 715, 835, 882, 1054, 1285, 1400
HpyCH4V TGCA 8 cut(s) 467, 479, 599, 1130, 1248, 1304, 1348, 1403
HpyF10VI GCNNNNNNNGC 1 cut(s) 1310
HpyF3I CTNAG 3 cut(s) 853, 948, 1426
Hsp92II CATG 8 cut(s) 171, 192, 348, 522, 691, 1069, 1081, 1248
Kpn2I TCCGGA 1 cut(s) 634
Ksp22I TGATCA 1 cut(s) 567
KspAI GTTAAC 1 cut(s) 841
LmnI GCTCC 2 cut(s) 488, 1120
LweI GCATC 3 cut(s) 43, 466, 586
MaeI CTAG 1 cut(s) 704
MaeIII GTNAC 5 cut(s) 494, 521, 973, 1265, 1481
MbiI CCGCTC 1 cut(s) 368
MboII GAAGA 6 cut(s) 214, 246, 329, 332, 719, 837
MfeI CAATTG 2 cut(s) 300, 429
MflI RGATCY 3 cut(s) 206, 1201, 1276
MhlI GDGCHC 2 cut(s) 263, 1077
MlyI GAGTC 1 cut(s) 845
MmeI TCCRAC 2 cut(s) 380, 1419
MnlI CCTC 3 cut(s) 943, 1089, 1115
Mph1103I ATGCAT 2 cut(s) 601, 1250
MroI TCCGGA 1 cut(s) 634
MseI TTAA 4 cut(s) 98, 131, 840, 1440
MslI CAYNNNNRTG 1 cut(s) 1029
MspI CCGG 1 cut(s) 635
MspR9I CCNGG 2 cut(s) 827, 1436
MunI CAATTG 2 cut(s) 300, 429
MvaI CCWGG 2 cut(s) 827, 1436
MwoI GCNNNNNNNGC 1 cut(s) 1310
NlaIII CATG 8 cut(s) 171, 192, 348, 522, 691, 1069, 1081, 1248
NlaIV GGNNCC 1 cut(s) 1203
NmeAIII GCCGAG 2 cut(s) 1204, 1253
NmuCI GTSAC 2 cut(s) 494, 521
NsiI ATGCAT 2 cut(s) 601, 1250
NspI RCATGY 1 cut(s) 192
PaqCI CACCTGC 1 cut(s) 392
PfeI GAWTC 5 cut(s) 337, 350, 371, 653, 1241
PflFI GACNNNGTC 1 cut(s) 713
PleI GAGTC 1 cut(s) 845
PpsI GAGTC 1 cut(s) 845
PsiI TTATAA 2 cut(s) 327, 890
Psp6I CCWGG 2 cut(s) 825, 1434
PspGI CCWGG 2 cut(s) 825, 1434
PspN4I GGNNCC 1 cut(s) 1203
PsuI RGATCY 3 cut(s) 206, 1201, 1276
PsyI GACNNNGTC 1 cut(s) 713
RsaI GTAC 2 cut(s) 79, 984
RsaNI GTAC 2 cut(s) 78, 983
RseI CAYNNNNRTG 1 cut(s) 1029
SaqAI TTAA 4 cut(s) 98, 131, 840, 1440
SchI GAGTC 1 cut(s) 845
ScrFI CCNGG 2 cut(s) 827, 1436
SduI GDGCHC 2 cut(s) 263, 1077
SetI ASST 8 cut(s) 312, 386, 493, 581, 766, 958, 1107, 1338
SfaNI GCATC 3 cut(s) 43, 466, 586
SmiMI CAYNNNNRTG 1 cut(s) 1029
SsiI CCGC 4 cut(s) 248, 368, 1342, 1456
SspMI CTAG 1 cut(s) 704
StyD4I CCNGG 2 cut(s) 825, 1434
TaaI ACNGT 7 cut(s) 500, 715, 835, 882, 1054, 1285, 1400
TaqI TCGA 5 cut(s) 257, 575, 873, 923, 1210
TatI WGTACW 2 cut(s) 77, 982
TfiI GAWTC 5 cut(s) 337, 350, 371, 653, 1241
Tru1I TTAA 4 cut(s) 98, 131, 840, 1440
Tru9I TTAA 4 cut(s) 98, 131, 840, 1440
TscAI CASTG 6 cut(s) 505, 595, 718, 1008, 1162, 1405
TseFI GTSAC 2 cut(s) 494, 521
Tsp45I GTSAC 2 cut(s) 494, 521
TspDTI ATGAA 8 cut(s) 119, 330, 507, 998, 1011, 1082, 1207, 1401
TspGWI ACGGA 1 cut(s) 1380
TspRI CASTG 6 cut(s) 505, 595, 718, 1008, 1162, 1405
Tth111I GACNNNGTC 1 cut(s) 713
XapI RAATTY 3 cut(s) 330, 1362, 1475
XceI RCATGY 1 cut(s) 192
XspI CTAG 1 cut(s) 704
Zsp2I ATGCAT 2 cut(s) 601, 1250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.