FvH4_3g21350

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
14332450 .. 14335803
3354 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g21350.t1

Sequence Viewer

Length: 936 bp
ATGGTGATGGTGACGACGACCACACGGGCTGCTCACTCCGATCGGTTTGGCGACGCAACCTCTGCCATCGCAGATCTCGTCTTCAAGAATCAGAACCTCCACTTCTTTACTAGTTTGCTCTTTTTGTTGTTCACATGTTCATTGCAGTTGACAGCATCTGCAGTAACTCGAAAAGTCGTTACTTGGGAATTTGATACAAAAACATTCCAGTCAAAACTGTTGTTTGGGTTTCGAATCGATGCAACCCGCACCGGATATCTTGTGCTGTTGGGTCAGAATAAGAGTGTTTGGTGGACAATTTTAGCTAAGTATGCAGAAATAAGAGATGTGACAGGTGGAAAGTCATTGTGGCAAAGTTTCGATTATCCTTCTGATACATTGTTACCGGAAATGAAGTTGGGATGGGACTTCAGGACATATCTTAAAAGGGAAATATCAGCATGGAAGAATTCAGAAGATCCATGTCCAGGAGAATTCACTTATGGGATTGAAATGGAACCTCATGCATACCCTGAAGCATATTTTCGGAAAGATGGTGTGAAATATTATCGTTCTGGCCCATGGAATGGCTTAAGATTCAGTGGTGCTCCAGCACTAAGACCTAATCCGATTTATAGTTTCAACTTTGTGTATAATGATGATGAAGTGTACTACATGTACAAACTTCAGAACAAGTCTGTAATTTCGATAATGGTATTAAATGGAACCACGAGTACACGCGATCGTGTTACATGGATTGAAGCAGAGAAAACTTGGAAGGCCTATGCATCAGTACCTAGAGATTTCTGTGATCGATATGGCCTTTGTGGACCAAATGTGAATTGTATCATCAGTAACAATCCAGTATGTCAATGTCTACAAGGATTTGAGCCGAAGTCACCAGAGAAATGGAATTTGACAGACTGGTCACTTGGATGTGTGCGTAACAAACCCTGA

Protein Analysis

312

Amino Acids

35.8

Weight (kDa)

8.66

Isoelectric Point (pI)

31.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 111 - 149 6.4e-11 D-mannose binding lectin
S_locus_glycop PF00954 183 - 293 5.5e-30 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27300
fragaria_vesca FvH4_3g15930 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g21350 FvH4_3g21400 FvH4_3g21400 FvH4_6g12332
malus_domestica MD02G1167100.v1.1 MD02G1167200.v1.1 MD03G1185600.v1.1 MD05G1213900.v1.1 MD05G1214100.v1.1 MD05G1214200.v1.1 MD05G1214700.v1.1 MD05G1216300.v1.1 MD05G1216800.v1.1 MD05G1217300.v1.1 MD05G1218000.v1.1 MD11G1231100.v1.1 MD11G1231200.v1.1 MD11G1231400.v1.1 MD11G1231500.v1.1 MD11G1232400.v1.1 MD11G1232500.v1.1
prunus_persica Prupe.4G142300_v2.0.a1 Prupe.4G142400_v2.0.a1 Prupe.4G142500_v2.0.a1 Prupe.4G142600_v2.0.a1 Prupe.4G142800_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195100_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195500_v2.0.a1 Prupe.4G195700_v2.0.a1 Prupe.4G195900_v2.0.a1
pyrus_communis pycom03g16540 pycom05g19920 pycom11g20460 pycom11g20480 pycom11g20490 pycom11g20500 pycom11g20530
rosa_chinensis RchiOBHm_Chr2g0139311 RchiOBHm_Chr2g0139351 RchiOBHm_Chr5g0026801 RchiOBHm_Chr5g0026851 RchiOBHm_Chr5g0026891 RchiOBHm_Chr5g0026911 RchiOBHm_Chr5g0036571 RchiOBHm_Chr5g0036591 RchiOBHm_Chr5g0036721 RchiOBHm_Chr5g0036741 RchiOBHm_Chr7g0222981
rosa_laevigata RLG00000002006 RLG00000019807 RLG00000032964 RLG00000032968 RLG00000032969 RLG00000033706 RLG00000033708 RLG00000033712 RLG00000033716
rosa_multiflora Rmu_co8256651.1_g000001 Rmu_co8279377.1_g000001 Rmu_co8429919.1_g000001 Rmu_co8490103.1_g000001 Rmu_sc0000774.1_g000002 Rmu_sc0002525.1_g000012 Rmu_sc0004223.1_g000008 Rmu_sc0004390.1_g000002 Rmu_sc0006059.1_g000014 Rmu_sc0006059.1_g000024 Rmu_sc0006514.1_g000020 Rmu_sc0014333.1_g000002 Rmu_ssc0000172.1_g000018 Rmu_ssc0000172.1_g000029
rosa_roxburghii Rroxscaffold_1G00044230 Rroxscaffold_1G00044260 Rroxscaffold_1G00044320 Rroxscaffold_1G00044340 Rroxscaffold_1G00052560 Rroxscaffold_1G00052570 Rroxscaffold_1G00052660 Rroxscaffold_1G00052720 Rroxscaffold_2G00105450 Rroxscaffold_2G00105460
rosa_rugosa Rorug02G0356900 Rorug02G0357000 Rorug02G0357100 Rorug02G0357200 Rorug02G0357300 Rorug02G0357400 Rorug02G0357500 Rorug02G0357600 Rorug05G0095400 Rorug05G0095500 Rorug05G0095500 Rorug05G0095600 Rorug05G0095700 Rorug05G0095800 Rorug05G0157700 Rorug05G0157800
rosa_samantha Rh2AG406800 Rh2AG406900 Rh2BG417300 Rh2CG392900 Rh2DG426200 Rh5AG189300 Rh5AG249400 Rh5AG250100 Rh5BG186300 Rh5BG186900 Rh5BG187000 Rh5BG249500 Rh5BG250600 Rh5BG250900 Rh5BG251500 Rh5BG251800 Rh5CG205500 Rh5CG206300 Rh5CG206700 Rh5CG283000 Rh5CG283300 Rh5CG283500 Rh5DG188500 Rh5DG188700 Rh5DG258700 Rh5DG258900 Rh5DG259600 Rh5DG259900 Rh7CG375800 Rh7DG352500
rosa_wichuraiana Rw2G032960 Rw2G032970 Rw2G033220 Rw2G033230 Rw5G017130 Rw5G017230 Rw5G022940 Rw5G022960 Rw5G022980 Rw7G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 904
AccB7I CCANNNNNTGG 1 cut(s) 566
AccI GTMKAC 1 cut(s) 856
AccII CGCG 1 cut(s) 720
AciI CCGC 1 cut(s) 247
AclWI GGATC 1 cut(s) 452
AcsI RAATTY 4 cut(s) 188, 448, 473, 892
AcuI CTGAAG 3 cut(s) 394, 534, 650
AfaI GTAC 4 cut(s) 650, 659, 715, 774
AfiI CCNNNNNNNGG 2 cut(s) 467, 566
AflII CTTAAG 1 cut(s) 571
AflIII ACRYGT 2 cut(s) 134, 654
AgsI TTSAA 4 cut(s) 85, 491, 622, 740
AhlI ACTAGT 1 cut(s) 110
AjnI CCWGG 1 cut(s) 466
AluBI AGCT 1 cut(s) 305
AluI AGCT 1 cut(s) 305
Alw21I GWGCWC 1 cut(s) 589
AlwI GGATC 1 cut(s) 452
AlwNI CAGNNNCTG 1 cut(s) 158
AoxI GGCC 3 cut(s) 556, 759, 799
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 4 cut(s) 188, 448, 473, 892
AspS9I GGNCC 2 cut(s) 557, 809
AsuHPI GGTGA 3 cut(s) 16, 22, 870
AsuII TTCGAA 1 cut(s) 232
AvaII GGWCC 1 cut(s) 809
BauI CACGAG 1 cut(s) 709
BbsI GAAGAC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 589
BbvI GCAGC 1 cut(s) 16
BccI CCATC 3 cut(s) 74, 396, 527
BciT130I CCWGG 1 cut(s) 468
BcuI ACTAGT 1 cut(s) 110
BfaI CTAG 2 cut(s) 111, 777
BfmI CTRYAG 1 cut(s) 159
BfrI CTTAAG 1 cut(s) 571
BglII AGATCT 1 cut(s) 73
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 468
Bme18I GGWCC 1 cut(s) 809
BmgT120I GGNCC 2 cut(s) 557, 809
BmiI GGNNCC 2 cut(s) 498, 706
BmrFI CCNGG 1 cut(s) 468
BmsI GCATC 3 cut(s) 164, 229, 776
BpiI GAAGAC 1 cut(s) 73
BpmI CTGGAG 1 cut(s) 573
Bpu14I TTCGAA 1 cut(s) 232
Bsa29I ATCGAT 2 cut(s) 237, 793
BsaJI CCNNGG 1 cut(s) 560
BsaWI WCCGGW 2 cut(s) 251, 385
Bsc4I CCNNNNNNNGG 2 cut(s) 467, 566
Bse1I ACTGG 3 cut(s) 208, 842, 908
Bse3DI GCAATG 1 cut(s) 140
BseBI CCWGG 1 cut(s) 468
BseCI ATCGAT 2 cut(s) 237, 793
BseDI CCNNGG 1 cut(s) 560
BseGI GGATG 2 cut(s) 407, 920
BseLI CCNNNNNNNGG 2 cut(s) 467, 566
BseMI GCAATG 1 cut(s) 140
BseNI ACTGG 3 cut(s) 208, 842, 908
BseXI GCAGC 1 cut(s) 16
Bsh1236I CGCG 1 cut(s) 720
Bsh1285I CGRYCG 2 cut(s) 43, 724
BshFI GGCC 3 cut(s) 558, 761, 801
BshVI ATCGAT 2 cut(s) 237, 793
BsiEI CGRYCG 2 cut(s) 43, 724
BsiHKAI GWGCWC 1 cut(s) 589
BsiSI CCGG 2 cut(s) 252, 386
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 2 cut(s) 467, 566
BsmFI GGGAC 1 cut(s) 419
BsnI GGCC 3 cut(s) 558, 761, 801
Bsp119I TTCGAA 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 589
Bsp1407I TGTACA 1 cut(s) 657
Bsp143I GATC 5 cut(s) 40, 73, 457, 721, 790
Bsp19I CCATGG 1 cut(s) 560
BspACI CCGC 1 cut(s) 247
BspANI GGCC 3 cut(s) 558, 761, 801
BspDI ATCGAT 2 cut(s) 237, 793
BspFNI CGCG 1 cut(s) 720
BspLI GGNNCC 2 cut(s) 498, 706
BspMAI CTGCAG 1 cut(s) 163
BspPI GGATC 1 cut(s) 452
BspT104I TTCGAA 1 cut(s) 232
BspTI CTTAAG 1 cut(s) 571
BsrDI GCAATG 1 cut(s) 140
BsrGI TGTACA 1 cut(s) 657
BsrI ACTGG 3 cut(s) 208, 842, 908
BssECI CCNNGG 1 cut(s) 560
BssMI GATC 5 cut(s) 40, 73, 457, 721, 790
BssSI CACGAG 1 cut(s) 709
BssT1I CCWWGG 1 cut(s) 560
Bst2BI CACGAG 1 cut(s) 709
Bst2UI CCWGG 1 cut(s) 468
Bst4CI ACNGT 1 cut(s) 219
BstAFI CTTAAG 1 cut(s) 571
BstAPI GCANNNNNTGC 1 cut(s) 62
BstAUI TGTACA 1 cut(s) 657
BstBI TTCGAA 1 cut(s) 232
BstDEI CTNAG 2 cut(s) 306, 596
BstDSI CCRYGG 1 cut(s) 560
BstF5I GGATG 2 cut(s) 407, 920
BstFNI CGCG 1 cut(s) 720
BstKTI GATC 5 cut(s) 43, 76, 460, 724, 793
BstMBI GATC 5 cut(s) 40, 73, 457, 721, 790
BstMCI CGRYCG 2 cut(s) 43, 724
BstMWI GCNNNNNNNGC 2 cut(s) 62, 311
BstNI CCWGG 1 cut(s) 468
BstNSI RCATGY 2 cut(s) 138, 658
BstSCI CCNGG 1 cut(s) 466
BstSFI CTRYAG 1 cut(s) 159
BstUI CGCG 1 cut(s) 720
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 73
BstX2I RGATCY 2 cut(s) 73, 457
BstXI CCANNNNNNTGG 1 cut(s) 888
BstYI RGATCY 2 cut(s) 73, 457
Bsu15I ATCGAT 2 cut(s) 237, 793
BsuRI GGCC 3 cut(s) 558, 761, 801
BsuTUI ATCGAT 2 cut(s) 237, 793
BtgI CCRYGG 1 cut(s) 560
BtgZI GCGATG 1 cut(s) 52
BtsCI GGATG 2 cut(s) 407, 920
BtsIMutI CAGTG 1 cut(s) 586
CaiI CAGNNNCTG 1 cut(s) 158
Cfr13I GGNCC 2 cut(s) 557, 809
ClaI ATCGAT 2 cut(s) 237, 793
CseI GACGC 1 cut(s) 62
Csp6I GTAC 4 cut(s) 649, 658, 714, 773
CviAII CATG 7 cut(s) 135, 441, 462, 503, 561, 655, 732
CviJI RGCY 7 cut(s) 29, 305, 558, 570, 761, 801, 871
CviKI_1 RGCY 7 cut(s) 29, 305, 558, 570, 761, 801, 871
CviQI GTAC 4 cut(s) 649, 658, 714, 773
DdeI CTNAG 2 cut(s) 306, 596
DpnI GATC 5 cut(s) 42, 75, 459, 723, 792
DpnII GATC 5 cut(s) 40, 73, 457, 721, 790
DrdI GACNNNNNNGTC 1 cut(s) 904
DseDI GACNNNNNNGTC 1 cut(s) 904
Eco130I CCWWGG 1 cut(s) 560
Eco147I AGGCCT 1 cut(s) 761
Eco32I GATATC 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 809
Eco57I CTGAAG 3 cut(s) 394, 534, 650
EcoRI GAATTC 2 cut(s) 448, 473
EcoRII CCWGG 1 cut(s) 466
EcoRV GATATC 1 cut(s) 257
EcoT14I CCWWGG 1 cut(s) 560
EcoT22I ATGCAT 2 cut(s) 508, 769
ErhI CCWWGG 1 cut(s) 560
FaeI CATG 7 cut(s) 138, 444, 465, 506, 564, 658, 735
FaqI GGGAC 1 cut(s) 419
FatI CATG 7 cut(s) 134, 440, 461, 502, 560, 654, 731
FauI CCCGC 1 cut(s) 254
FblI GTMKAC 1 cut(s) 856
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 2 cut(s) 414, 927
Fsp4HI GCNGC 1 cut(s) 30
FspBI CTAG 2 cut(s) 111, 777
GluI GCNGC 1 cut(s) 30
GsuI CTGGAG 1 cut(s) 573
HaeIII GGCC 3 cut(s) 558, 761, 801
HapII CCGG 2 cut(s) 252, 386
HgaI GACGC 1 cut(s) 62
Hin1II CATG 7 cut(s) 138, 444, 465, 506, 564, 658, 735
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
HinfI GANTC 3 cut(s) 88, 234, 576
HpaII CCGG 2 cut(s) 252, 386
HphI GGTGA 3 cut(s) 16, 22, 870
Hpy166II GTNNAC 7 cut(s) 132, 150, 294, 649, 716, 809, 857
Hpy188I TCNGA 8 cut(s) 40, 93, 276, 373, 454, 528, 609, 669
Hpy188III TCNNGA 2 cut(s) 85, 412
Hpy8I GTNNAC 7 cut(s) 132, 150, 294, 649, 716, 809, 857
Hpy99I CGWCG 2 cut(s) 19, 56
HpyAV CCTTC 2 cut(s) 378, 751
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4V TGCA 6 cut(s) 145, 161, 242, 314, 506, 767
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 311
HpyF3I CTNAG 2 cut(s) 306, 596
Hsp92II CATG 7 cut(s) 138, 444, 465, 506, 564, 658, 735
Kzo9I GATC 5 cut(s) 40, 73, 457, 721, 790
LmnI GCTCC 1 cut(s) 592
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 3 cut(s) 164, 229, 776
MaeI CTAG 2 cut(s) 111, 777
MalI GATC 5 cut(s) 42, 75, 459, 723, 792
MboI GATC 5 cut(s) 40, 73, 457, 721, 790
MboII GAAGA 3 cut(s) 73, 457, 467
MflI RGATCY 2 cut(s) 73, 457
MhlI GDGCHC 1 cut(s) 589
MluCI AATT 7 cut(s) 188, 297, 448, 473, 681, 820, 892
MnlI CCTC 3 cut(s) 70, 107, 510
Mph1103I ATGCAT 2 cut(s) 508, 769
MseI TTAA 3 cut(s) 423, 572, 698
MslI CAYNNNNRTG 1 cut(s) 913
MspCI CTTAAG 1 cut(s) 571
MspI CCGG 2 cut(s) 252, 386
MspR9I CCNGG 1 cut(s) 468
MvaI CCWGG 1 cut(s) 468
MvnI CGCG 1 cut(s) 720
MwoI GCNNNNNNNGC 2 cut(s) 62, 311
NcoI CCATGG 1 cut(s) 560
NdeII GATC 5 cut(s) 40, 73, 457, 721, 790
NlaIII CATG 7 cut(s) 138, 444, 465, 506, 564, 658, 735
NlaIV GGNNCC 2 cut(s) 498, 706
NmuCI GTSAC 4 cut(s) 10, 328, 876, 906
NsiI ATGCAT 2 cut(s) 508, 769
NspI RCATGY 2 cut(s) 138, 658
NspV TTCGAA 1 cut(s) 232
PceI AGGCCT 1 cut(s) 761
PciI ACATGT 2 cut(s) 134, 654
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PfeI GAWTC 3 cut(s) 88, 234, 576
PflMI CCANNNNNTGG 1 cut(s) 566
PfoI TCCNGGA 1 cut(s) 466
PkrI GCNGC 1 cut(s) 31
Ple19I CGATCG 2 cut(s) 43, 724
PscI ACATGT 2 cut(s) 134, 654
Psp6I CCWGG 1 cut(s) 466
PspGI CCWGG 1 cut(s) 466
PspN4I GGNNCC 2 cut(s) 498, 706
PspPI GGNCC 2 cut(s) 557, 809
PsrI GAACNNNNNNTAC 2 cut(s) 697, 729
PstI CTGCAG 1 cut(s) 163
PstNI CAGNNNCTG 1 cut(s) 158
PsuI RGATCY 2 cut(s) 73, 457
PvuI CGATCG 2 cut(s) 43, 724
RsaI GTAC 4 cut(s) 650, 659, 715, 774
RsaNI GTAC 4 cut(s) 649, 658, 714, 773
RseI CAYNNNNRTG 1 cut(s) 913
SaqAI TTAA 3 cut(s) 423, 572, 698
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 5 cut(s) 40, 73, 457, 721, 790
Sau96I GGNCC 2 cut(s) 557, 809
ScrFI CCNGG 1 cut(s) 468
SduI GDGCHC 1 cut(s) 589
SetI ASST 7 cut(s) 62, 99, 307, 337, 502, 604, 778
SfaNI GCATC 3 cut(s) 164, 229, 776
SfcI CTRYAG 1 cut(s) 159
SfuI TTCGAA 1 cut(s) 232
SinI GGWCC 1 cut(s) 809
SmiMI CAYNNNNRTG 1 cut(s) 913
SmlI CTYRAG 1 cut(s) 571
SmoI CTYRAG 1 cut(s) 571
SpeI ACTAGT 1 cut(s) 110
Sse9I AATT 7 cut(s) 188, 297, 448, 473, 681, 820, 892
SseBI AGGCCT 1 cut(s) 761
SsiI CCGC 1 cut(s) 247
SspI AATATT 1 cut(s) 545
SspMI CTAG 2 cut(s) 111, 777
StuI AGGCCT 1 cut(s) 761
StyD4I CCNGG 1 cut(s) 466
StyI CCWWGG 1 cut(s) 560
TaaI ACNGT 1 cut(s) 219
TaqI TCGA 6 cut(s) 169, 232, 237, 360, 686, 793
TasI AATT 7 cut(s) 188, 297, 448, 473, 681, 820, 892
TatI WGTACW 3 cut(s) 648, 657, 713
TfiI GAWTC 3 cut(s) 88, 234, 576
Tru1I TTAA 3 cut(s) 423, 572, 698
Tru9I TTAA 3 cut(s) 423, 572, 698
TscAI CASTG 1 cut(s) 586
TseFI GTSAC 4 cut(s) 10, 328, 876, 906
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 4 cut(s) 10, 328, 876, 906
TspDTI ATGAA 3 cut(s) 129, 407, 657
TspRI CASTG 1 cut(s) 586
Van91I CCANNNNNTGG 1 cut(s) 566
Vha464I CTTAAG 1 cut(s) 571
VpaK11BI GGWCC 1 cut(s) 809
XapI RAATTY 4 cut(s) 188, 448, 473, 892
XceI RCATGY 2 cut(s) 138, 658
XmiI GTMKAC 1 cut(s) 856
XspI CTAG 2 cut(s) 111, 777
Zsp2I ATGCAT 2 cut(s) 508, 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.