Rmu_ssc0000172.1_g000018

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000172.1
OG0000207
Physical Location & Seq
Forward (+)
86149 .. 89497
3349 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000172.1_g000018.1.cds

Sequence Viewer

Length: 2244 bp
atgcaagccttcagaaccctttttgtgtgctacttctttttctcctccgtaaaaaccccatttacaactgcactagacgctatcactccaagtcaatatattagagatggtgaaactctagtttctgctgatggaaactttgaactgggattctttagtaagtcgaaaggccaatacttgggaatatggtacactttctctactgacatagttgtgtgggtagccaacagagaaacaccggttaatgattcttcaggagtcttaaagctcactgatcagggagttttagtccttctcaatagctcaaatggcactgtatggtcaaccaattcatcaagaactgcagggaatccagtcttgcaactcttggattcgggaaatcttgttgtgaaagatggaaatgatactagccctgattactttctttggcagagttttgattatccttgtgacacacaactaccaggaatgaaacttggccggaacttagttaatggtttagactggtatctctcgtcctggaggagcacagatgatcctgctcaaggagagttttcactacggatggatcctcgtggtttacctcaattttttgaagttcagggagctaagatactgactagagcaggatcatggaacggccttcaattgactggatatcaaaggaggccaaatccaatatctgagtttttatttgtgttgaatgagacagaaatctattatgagtacacactcctcaaccggtctacgttctctagatatgtaatgaatccatatggcactacacagtggttaacatggatagactacacaaatagttgggagcctttctttgcaagccaagcagatcagtgtgaaatttacgctttttgtggggctaatgctaattgtaatgtcaatgaagcccccatgtgtgcatgcttgaaaggatttgtacctaaatctccacaaaagtggaactcttcacgttggtctgatggatgtgttcgaaggactccattagtttgcagtgatagagatgacttcttaatatatagtagatttaaattgccagacacatcttcttcctggtatgacaagagcatgagcctcaaggaatgcaaggaattgtgtttgagaaactgctcttgtacggcttatgcaaatttagatgtcagggaaggaggaagtggctgcttgctttggtttggaaacctcactgacataagagaatttacctctgattctcaagacctctatatacgaatagcttcttcagacacagatgctattgggaagaagagcaagtccaacaagagtaggcaagctggaattgtaatcagctctgctcttcttgtagtgggaatgctaatacttggattcttcttgtataaacggaacaagaaactcagaaatcaagatgttagaagattgctggattgccaaatggatgactgtgaagaaggaagggaagacatggagttaccgctatttgactttaccactatagctgatgccactgaaaacttttcaagcaacaacaaactgggacaaggcggttttggacctgtgtacaaggaaagacagaaatcgctcgactggccttcctgctacaacattattgacggaactgcacgagggcttctctatcttcaccaagactcgagattaagaattattcacagagatctgaaacctagtaatattttgctagatgaaaacatgaacccaaggatttcagattttggcctggctaaaacatttagctttgatcaaagtcaagccaatacgaataaagtggctggaacatatggttatatggcgcctgaatatgcagtagatggaattttctcgacgaaatcagatgtatttagctttggagttgtgctgattgagttattgagtagggagaagaacaggggattttgtcatccagatcacgattttaatcttcttggacatgcatggacactatggacacaaaatgtaccactggaactcatcgataagacattatgtgatccggataccatatccgaagttttaaggtgtcttcatgtgggtctgttatgtgtgcagcaagtacctgaagatagaccaagcatgtcatctgtggtactaatgttgggcagtcatgatgttgtgctgcctttgccaaagcagcctggtttttacactgaacggactcttcccgaatcatcatcaaggtcacgtgacctgtgttcacccagtaacttcagcactacattgttacaggctcggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

747

Amino Acids

84.37

Weight (kDa)

5.33

Isoelectric Point (pI)

44.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27300
fragaria_vesca FvH4_3g15930 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g21350 FvH4_3g21400 FvH4_3g21400 FvH4_6g12332
malus_domestica MD02G1167100.v1.1 MD02G1167200.v1.1 MD03G1185600.v1.1 MD05G1213900.v1.1 MD05G1214100.v1.1 MD05G1214200.v1.1 MD05G1214700.v1.1 MD05G1216300.v1.1 MD05G1216800.v1.1 MD05G1217300.v1.1 MD05G1218000.v1.1 MD11G1231100.v1.1 MD11G1231200.v1.1 MD11G1231400.v1.1 MD11G1231500.v1.1 MD11G1232400.v1.1 MD11G1232500.v1.1
prunus_persica Prupe.4G142300_v2.0.a1 Prupe.4G142400_v2.0.a1 Prupe.4G142500_v2.0.a1 Prupe.4G142600_v2.0.a1 Prupe.4G142800_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195100_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195500_v2.0.a1 Prupe.4G195700_v2.0.a1 Prupe.4G195900_v2.0.a1
pyrus_communis pycom03g16540 pycom05g19920 pycom11g20460 pycom11g20480 pycom11g20490 pycom11g20500 pycom11g20530
rosa_chinensis RchiOBHm_Chr2g0139311 RchiOBHm_Chr2g0139351 RchiOBHm_Chr5g0026801 RchiOBHm_Chr5g0026851 RchiOBHm_Chr5g0026891 RchiOBHm_Chr5g0026911 RchiOBHm_Chr5g0036571 RchiOBHm_Chr5g0036591 RchiOBHm_Chr5g0036721 RchiOBHm_Chr5g0036741 RchiOBHm_Chr7g0222981
rosa_laevigata RLG00000002006 RLG00000019807 RLG00000032964 RLG00000032968 RLG00000032969 RLG00000033706 RLG00000033708 RLG00000033712 RLG00000033716
rosa_multiflora Rmu_co8256651.1_g000001 Rmu_co8279377.1_g000001 Rmu_co8429919.1_g000001 Rmu_co8490103.1_g000001 Rmu_sc0000774.1_g000002 Rmu_sc0002525.1_g000012 Rmu_sc0004223.1_g000008 Rmu_sc0004390.1_g000002 Rmu_sc0006059.1_g000014 Rmu_sc0006059.1_g000024 Rmu_sc0006514.1_g000020 Rmu_sc0014333.1_g000002 Rmu_ssc0000172.1_g000018 Rmu_ssc0000172.1_g000029
rosa_roxburghii Rroxscaffold_1G00044230 Rroxscaffold_1G00044260 Rroxscaffold_1G00044320 Rroxscaffold_1G00044340 Rroxscaffold_1G00052560 Rroxscaffold_1G00052570 Rroxscaffold_1G00052660 Rroxscaffold_1G00052720 Rroxscaffold_2G00105450 Rroxscaffold_2G00105460
rosa_rugosa Rorug02G0356900 Rorug02G0357000 Rorug02G0357100 Rorug02G0357200 Rorug02G0357300 Rorug02G0357400 Rorug02G0357500 Rorug02G0357600 Rorug05G0095400 Rorug05G0095500 Rorug05G0095500 Rorug05G0095600 Rorug05G0095700 Rorug05G0095800 Rorug05G0157700 Rorug05G0157800
rosa_samantha Rh2AG406800 Rh2AG406900 Rh2BG417300 Rh2CG392900 Rh2DG426200 Rh5AG189300 Rh5AG249400 Rh5AG250100 Rh5BG186300 Rh5BG186900 Rh5BG187000 Rh5BG249500 Rh5BG250600 Rh5BG250900 Rh5BG251500 Rh5BG251800 Rh5CG205500 Rh5CG206300 Rh5CG206700 Rh5CG283000 Rh5CG283300 Rh5CG283500 Rh5DG188500 Rh5DG188700 Rh5DG258700 Rh5DG258900 Rh5DG259600 Rh5DG259900 Rh7CG375800 Rh7DG352500
rosa_wichuraiana Rw2G032960 Rw2G032970 Rw2G033220 Rw2G033230 Rw5G017130 Rw5G017230 Rw5G022940 Rw5G022960 Rw5G022980 Rw7G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1801
AccB7I CCANNNNNTGG 1 cut(s) 178
AccI GTMKAC 1 cut(s) 746
AccIII TCCGGA 1 cut(s) 2002
AciI CCGC 2 cut(s) 1466, 1536
AclWI GGATC 5 cut(s) 530, 563, 576, 637, 1994
AcoI YGGCCR 1 cut(s) 478
AcsI RAATTY 4 cut(s) 858, 1144, 1211, 1824
AcuI CTGAAG 4 cut(s) 237, 1239, 2088, 2200
AcvI CACGTG 1 cut(s) 2192
AcyI GRCGYC 1 cut(s) 1802
AfaI GTAC 8 cut(s) 191, 728, 936, 1132, 1553, 1968, 2064, 2097
AfiI CCNNNNNNNGG 2 cut(s) 178, 545
AgeI ACCGGT 2 cut(s) 238, 741
AgsI TTSAA 6 cut(s) 143, 596, 647, 703, 925, 1512
AjnI CCWGG 5 cut(s) 463, 518, 1067, 1728, 2143
AleI CACNNNNGTG 1 cut(s) 952
AluBI AGCT 9 cut(s) 268, 303, 608, 1250, 1307, 1323, 1490, 1746, 1854
AluI AGCT 9 cut(s) 268, 303, 608, 1250, 1307, 1323, 1490, 1746, 1854
Alw21I GWGCWC 1 cut(s) 530
Alw26I GTCTC 1 cut(s) 701
AlwI GGATC 5 cut(s) 530, 563, 576, 637, 1994
Ama87I CYCGRG 1 cut(s) 1642
Aor13HI TCCGGA 1 cut(s) 2002
AoxI GGCC 6 cut(s) 169, 478, 640, 668, 1580, 1726
ApeKI GCWGC 4 cut(s) 1173, 2056, 2125, 2140
ApoI RAATTY 4 cut(s) 858, 1144, 1211, 1824
AsiGI ACCGGT 2 cut(s) 238, 741
Asp700I GAANNNNTTC 1 cut(s) 1249
AspLEI GCGC 1 cut(s) 1804
AspS9I GGNCC 1 cut(s) 1544
AsuHPI GGTGA 3 cut(s) 122, 1625, 2196
AsuII TTCGAA 1 cut(s) 988
AvaI CYCGRG 1 cut(s) 1642
AvaII GGWCC 1 cut(s) 1544
BaeI ACNNNNGTAYC 2 cut(s) 2087, 2120
BamHI GGATCC 1 cut(s) 568
BanI GGYRCC 1 cut(s) 1801
BauI CACGAG 2 cut(s) 573, 1614
BbrPI CACGTG 1 cut(s) 2192
BbsI GAAGAC 2 cut(s) 1458, 2024
Bbv12I GWGCWC 1 cut(s) 530
BbvI GCAGC 4 cut(s) 1160, 2068, 2112, 2152
BccI CCATC 6 cut(s) 101, 125, 389, 559, 971, 1814
BceAI ACGGC 2 cut(s) 655, 1149
BciT130I CCWGG 5 cut(s) 465, 520, 1069, 1730, 2145
BciVI GTATCC 1 cut(s) 1999
BclI TGATCA 2 cut(s) 274, 1750
BcoDI GTCTC 1 cut(s) 701
BfaI CTAG 7 cut(s) 74, 119, 408, 621, 756, 1677, 1691
BfmI CTRYAG 2 cut(s) 342, 1485
BfoI RGCGCY 1 cut(s) 1805
BfuI GTATCC 1 cut(s) 1999
BglII AGATCT 1 cut(s) 1666
BisI GCNGC 4 cut(s) 1174, 2057, 2126, 2141
BlsI GCNGC 4 cut(s) 1175, 2058, 2127, 2142
Bme1390I CCNGG 5 cut(s) 465, 520, 1069, 1730, 2145
Bme18I GGWCC 1 cut(s) 1544
BmeT110I CYCGRG 1 cut(s) 1642
BmgT120I GGNCC 1 cut(s) 1544
BmiI GGNNCC 3 cut(s) 570, 825, 1803
BmrFI CCNGG 5 cut(s) 465, 520, 1069, 1730, 2145
BmrI ACTGGG 3 cut(s) 155, 1535, 2202
BmsI GCATC 2 cut(s) 1255, 1483
BmuI ACTGGG 3 cut(s) 155, 1535, 2202
BpiI GAAGAC 2 cut(s) 1458, 2024
BplI GAGNNNNNCTC 2 cut(s) 1608, 1640
BpmI CTGGAG 1 cut(s) 541
Bpu14I TTCGAA 1 cut(s) 988
BpuEI CTTGAG 3 cut(s) 528, 1076, 1212
Bsa29I ATCGAT 1 cut(s) 1983
BsaAI YACGTR 1 cut(s) 2192
BsaBI GATNNNNATC 1 cut(s) 1926
BsaHI GRCGYC 1 cut(s) 1802
BsaJI CCNNGG 1 cut(s) 1709
BsaWI WCCGGW 3 cut(s) 238, 741, 2002
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 545
Bse118I RCCGGY 2 cut(s) 238, 741
Bse1I ACTGG 8 cut(s) 150, 353, 509, 658, 1530, 1583, 1977, 2208
Bse8I GATNNNNATC 1 cut(s) 1926
BseAI TCCGGA 1 cut(s) 2002
BseBI CCWGG 5 cut(s) 465, 520, 1069, 1730, 2145
BseCI ATCGAT 1 cut(s) 1983
BseDI CCNNGG 1 cut(s) 1709
BseGI GGATG 4 cut(s) 570, 986, 1435, 1909
BseJI GATNNNNATC 1 cut(s) 1926
BseLI CCNNNNNNNGG 2 cut(s) 178, 545
BseMII CTCAG 2 cut(s) 675, 1402
BseNI ACTGG 8 cut(s) 150, 353, 509, 658, 1530, 1583, 1977, 2208
BseRI GAGGAG 3 cut(s) 34, 538, 725
BseXI GCAGC 4 cut(s) 1160, 2068, 2112, 2152
BsgI GTGCAG 3 cut(s) 54, 1596, 2075
BshFI GGCC 6 cut(s) 171, 480, 642, 670, 1582, 1728
BshNI GGYRCC 1 cut(s) 1801
BshTI ACCGGT 2 cut(s) 238, 741
BshVI ATCGAT 1 cut(s) 1983
BsiHKAI GWGCWC 1 cut(s) 530
BsiHKCI CYCGRG 1 cut(s) 1642
BsiSI CCGG 4 cut(s) 239, 481, 742, 2003
BslFI GGGAC 1 cut(s) 1542
BslI CCNNNNNNNGG 2 cut(s) 178, 545
BsmAI GTCTC 1 cut(s) 701
BsmFI GGGAC 1 cut(s) 1542
BsmI GAATGC 2 cut(s) 1103, 1350
BsnI GGCC 6 cut(s) 171, 480, 642, 670, 1582, 1728
BsoBI CYCGRG 1 cut(s) 1642
Bsp119I TTCGAA 1 cut(s) 988
Bsp1286I GDGCHC 1 cut(s) 530
Bsp13I TCCGGA 1 cut(s) 2002
Bsp1407I TGTACA 1 cut(s) 1551
Bsp143I GATC 9 cut(s) 274, 535, 568, 629, 847, 1666, 1750, 1915, 1999
BspACI CCGC 2 cut(s) 1466, 1536
BspANI GGCC 6 cut(s) 171, 480, 642, 670, 1582, 1728
BspCNI CTCAG 2 cut(s) 676, 1401
BspDI ATCGAT 1 cut(s) 1983
BspEI TCCGGA 1 cut(s) 2002
BspHI TCATGA 1 cut(s) 2113
BspLI GGNNCC 3 cut(s) 570, 825, 1803
BspMAI CTGCAG 1 cut(s) 346
BspPI GGATC 5 cut(s) 530, 563, 576, 637, 1994
BspQI GCTCTTC 2 cut(s) 1274, 1335
BspT104I TTCGAA 1 cut(s) 988
BspT107I GGYRCC 1 cut(s) 1801
BsrFI RCCGGY 2 cut(s) 238, 741
BsrGI TGTACA 1 cut(s) 1551
BsrI ACTGG 8 cut(s) 150, 353, 509, 658, 1530, 1583, 1977, 2208
BssAI RCCGGY 2 cut(s) 238, 741
BssECI CCNNGG 1 cut(s) 1709
BssMI GATC 9 cut(s) 274, 535, 568, 629, 847, 1666, 1750, 1915, 1999
BssNI GRCGYC 1 cut(s) 1802
BssSI CACGAG 2 cut(s) 573, 1614
BssT1I CCWWGG 1 cut(s) 1709
Bst2BI CACGAG 2 cut(s) 573, 1614
Bst2UI CCWGG 5 cut(s) 465, 520, 1069, 1730, 2145
Bst4CI ACNGT 3 cut(s) 316, 789, 1436
Bst6I CTCTTC 4 cut(s) 967, 1274, 1335, 2172
BstACI GRCGYC 1 cut(s) 1802
BstAUI TGTACA 1 cut(s) 1551
BstBAI YACGTR 1 cut(s) 2192
BstBI TTCGAA 1 cut(s) 988
BstC8I GCNNGC 5 cut(s) 6, 838, 919, 1178, 1305
BstDEI CTNAG 4 cut(s) 487, 609, 684, 1388
BstENI CCTNNNNNAGG 1 cut(s) 543
BstF5I GGATG 4 cut(s) 570, 986, 1435, 1909
BstH2I RGCGCY 1 cut(s) 1805
BstHHI GCGC 1 cut(s) 1804
BstKTI GATC 9 cut(s) 277, 538, 571, 632, 850, 1669, 1753, 1918, 2002
BstMAI GTCTC 1 cut(s) 701
BstMBI GATC 9 cut(s) 274, 535, 568, 629, 847, 1666, 1750, 1915, 1999
BstMWI GCNNNNNNNGC 6 cut(s) 77, 309, 842, 1579, 2131, 2140
BstNI CCWGG 5 cut(s) 465, 520, 1069, 1730, 2145
BstNSI RCATGY 3 cut(s) 921, 1943, 2086
BstSCI CCNGG 5 cut(s) 463, 518, 1067, 1728, 2143
BstSFI CTRYAG 2 cut(s) 342, 1485
BstV1I GCAGC 4 cut(s) 1160, 2068, 2112, 2152
BstV2I GAAGAC 2 cut(s) 1458, 2024
BstX2I RGATCY 2 cut(s) 568, 1666
BstXI CCANNNNNNTGG 1 cut(s) 954
BstYI RGATCY 2 cut(s) 568, 1666
Bsu15I ATCGAT 1 cut(s) 1983
BsuI GTATCC 1 cut(s) 1999
BsuRI GGCC 6 cut(s) 171, 480, 642, 670, 1582, 1728
BsuTUI ATCGAT 1 cut(s) 1983
BtsCI GGATG 4 cut(s) 570, 986, 1435, 1909
BtsI GCAGTG 1 cut(s) 1015
BtsIMutI CAGTG 9 cut(s) 270, 312, 794, 857, 1015, 1197, 1497, 1970, 2154
Cac8I GCNNGC 5 cut(s) 6, 838, 919, 1178, 1305
CciI TCATGA 1 cut(s) 2113
CfoI GCGC 1 cut(s) 1804
Cfr10I RCCGGY 2 cut(s) 238, 741
Cfr13I GGNCC 1 cut(s) 1544
ClaI ATCGAT 1 cut(s) 1983
CseI GACGC 1 cut(s) 86
Csp6I GTAC 8 cut(s) 190, 727, 935, 1131, 1552, 1967, 2063, 2096
CspAI ACCGGT 2 cut(s) 238, 741
CviQI GTAC 8 cut(s) 190, 727, 935, 1131, 1552, 1967, 2063, 2096
DdeI CTNAG 4 cut(s) 487, 609, 684, 1388
DinI GGCGCC 1 cut(s) 1803
DpnI GATC 9 cut(s) 276, 537, 570, 631, 849, 1668, 1752, 1917, 2001
DpnII GATC 9 cut(s) 274, 535, 568, 629, 847, 1666, 1750, 1915, 1999
DraI TTTAAA 1 cut(s) 1045
EaeI YGGCCR 1 cut(s) 478
Eam1104I CTCTTC 4 cut(s) 967, 1274, 1335, 2172
EarI CTCTTC 4 cut(s) 967, 1274, 1335, 2172
Eco130I CCWWGG 1 cut(s) 1709
Eco32I GATATC 1 cut(s) 659
Eco47I GGWCC 1 cut(s) 1544
Eco57I CTGAAG 4 cut(s) 237, 1239, 2088, 2200
Eco72I CACGTG 1 cut(s) 2192
Eco88I CYCGRG 1 cut(s) 1642
EcoNI CCTNNNNNAGG 1 cut(s) 543
EcoRII CCWGG 5 cut(s) 463, 518, 1067, 1728, 2143
EcoRV GATATC 1 cut(s) 659
EcoT14I CCWWGG 1 cut(s) 1709
EcoT22I ATGCAT 1 cut(s) 1945
EgeI GGCGCC 1 cut(s) 1803
EheI GGCGCC 1 cut(s) 1803
ErhI CCWWGG 1 cut(s) 1709
FaqI GGGAC 1 cut(s) 1542
FauNDI CATATG 2 cut(s) 775, 1789
FbaI TGATCA 2 cut(s) 274, 1750
FblI GTMKAC 1 cut(s) 746
Fnu4HI GCNGC 4 cut(s) 1174, 2057, 2126, 2141
FokI GGATG 4 cut(s) 577, 993, 1442, 1896
Fsp4HI GCNGC 4 cut(s) 1174, 2057, 2126, 2141
FspBI CTAG 7 cut(s) 74, 119, 408, 621, 756, 1677, 1691
GlaI GCGC 1 cut(s) 1803
GluI GCNGC 4 cut(s) 1174, 2057, 2126, 2141
GsuI CTGGAG 1 cut(s) 541
HaeII RGCGCY 1 cut(s) 1805
HaeIII GGCC 6 cut(s) 171, 480, 642, 670, 1582, 1728
HapII CCGG 4 cut(s) 239, 481, 742, 2003
HgaI GACGC 1 cut(s) 86
HhaI GCGC 1 cut(s) 1804
Hin1I GRCGYC 1 cut(s) 1802
Hin6I GCGC 1 cut(s) 1802
HinP1I GCGC 1 cut(s) 1802
HincII GTYRAC 2 cut(s) 324, 795
HindII GTYRAC 2 cut(s) 324, 795
HpaI GTTAAC 1 cut(s) 795
HpaII CCGG 4 cut(s) 239, 481, 742, 2003
HphI GGTGA 3 cut(s) 122, 1625, 2196
Hpy166II GTNNAC 8 cut(s) 192, 324, 581, 729, 747, 795, 1552, 2204
Hpy8I GTNNAC 8 cut(s) 192, 324, 581, 729, 747, 795, 1552, 2204
Hpy99I CGWCG 1 cut(s) 1837
HpyAV CCTTC 8 cut(s) 19, 302, 653, 984, 1154, 1436, 1440, 1593
HpyCH4III ACNGT 3 cut(s) 316, 789, 1436
HpyCH4IV ACGT 3 cut(s) 749, 967, 2191
HpyF10VI GCNNNNNNNGC 6 cut(s) 77, 309, 842, 1579, 2131, 2140
HpyF3I CTNAG 4 cut(s) 487, 609, 684, 1388
HpySE526I ACGT 3 cut(s) 749, 967, 2191
Hsp92I GRCGYC 1 cut(s) 1802
HspAI GCGC 1 cut(s) 1802
KasI GGCGCC 1 cut(s) 1801
Kpn2I TCCGGA 1 cut(s) 2002
Ksp22I TGATCA 2 cut(s) 274, 1750
KspAI GTTAAC 1 cut(s) 795
Kzo9I GATC 9 cut(s) 274, 535, 568, 629, 847, 1666, 1750, 1915, 1999
LguI GCTCTTC 2 cut(s) 1274, 1335
LmnI GCTCC 3 cut(s) 525, 605, 823
Lsp1109I GCAGC 4 cut(s) 1160, 2068, 2112, 2152
LweI GCATC 2 cut(s) 1255, 1483
MaeI CTAG 7 cut(s) 74, 119, 408, 621, 756, 1677, 1691
MaeII ACGT 3 cut(s) 749, 967, 2191
MaeIII GTNAC 6 cut(s) 449, 1461, 2187, 2192, 2210, 2229
MalI GATC 9 cut(s) 276, 537, 570, 631, 849, 1668, 1752, 1917, 2001
MboI GATC 9 cut(s) 274, 535, 568, 629, 847, 1666, 1750, 1915, 1999
MfeI CAATTG 1 cut(s) 647
MflI RGATCY 2 cut(s) 568, 1666
MhlI GDGCHC 1 cut(s) 530
Mly113I GGCGCC 1 cut(s) 1802
MlyI GAGTC 4 cut(s) 267, 988, 1634, 2158
MmeI TCCRAC 1 cut(s) 1314
Mph1103I ATGCAT 1 cut(s) 1945
MroI TCCGGA 1 cut(s) 2002
MroXI GAANNNNTTC 1 cut(s) 1249
MseI TTAA 9 cut(s) 243, 263, 492, 794, 1028, 1044, 1649, 1926, 2024
MslI CAYNNNNRTG 2 cut(s) 212, 952
MspI CCGG 4 cut(s) 239, 481, 742, 2003
MspR9I CCNGG 5 cut(s) 465, 520, 1069, 1730, 2145
MunI CAATTG 1 cut(s) 647
Mva1269I GAATGC 2 cut(s) 1103, 1350
MvaI CCWGG 5 cut(s) 465, 520, 1069, 1730, 2145
MwoI GCNNNNNNNGC 6 cut(s) 77, 309, 842, 1579, 2131, 2140
NarI GGCGCC 1 cut(s) 1802
NdeI CATATG 2 cut(s) 775, 1789
NdeII GATC 9 cut(s) 274, 535, 568, 629, 847, 1666, 1750, 1915, 1999
NlaIV GGNNCC 3 cut(s) 570, 825, 1803
NmuCI GTSAC 3 cut(s) 449, 2187, 2192
NsiI ATGCAT 1 cut(s) 1945
NspI RCATGY 3 cut(s) 921, 1943, 2086
NspV TTCGAA 1 cut(s) 988
OliI CACNNNNGTG 1 cut(s) 952
PaeI GCATGC 1 cut(s) 921
PaeR7I CTCGAG 1 cut(s) 1642
PagI TCATGA 1 cut(s) 2113
PciSI GCTCTTC 2 cut(s) 1274, 1335
PctI GAATGC 2 cut(s) 1103, 1350
PdmI GAANNNNTTC 1 cut(s) 1249
PfeI GAWTC 8 cut(s) 150, 248, 349, 371, 769, 1223, 1359, 2174
PflMI CCANNNNNTGG 1 cut(s) 178
PfoI TCCNGGA 1 cut(s) 518
PinAI ACCGGT 2 cut(s) 238, 741
PkrI GCNGC 4 cut(s) 1175, 2058, 2127, 2142
PleI GAGTC 4 cut(s) 266, 988, 1634, 2158
PluTI GGCGCC 1 cut(s) 1805
PmaCI CACGTG 1 cut(s) 2192
PmlI CACGTG 1 cut(s) 2192
PpsI GAGTC 4 cut(s) 266, 988, 1634, 2158
Ppu21I YACGTR 1 cut(s) 2192
Psp6I CCWGG 5 cut(s) 463, 518, 1067, 1728, 2143
PspCI CACGTG 1 cut(s) 2192
PspGI CCWGG 5 cut(s) 463, 518, 1067, 1728, 2143
PspN4I GGNNCC 3 cut(s) 570, 825, 1803
PspPI GGNCC 1 cut(s) 1544
PstI CTGCAG 1 cut(s) 346
PsuI RGATCY 2 cut(s) 568, 1666
RsaI GTAC 8 cut(s) 191, 728, 936, 1132, 1553, 1968, 2064, 2097
RsaNI GTAC 8 cut(s) 190, 727, 935, 1131, 1552, 1967, 2063, 2096
RseI CAYNNNNRTG 2 cut(s) 212, 952
SapI GCTCTTC 2 cut(s) 1274, 1335
SaqAI TTAA 9 cut(s) 243, 263, 492, 794, 1028, 1044, 1649, 1926, 2024
SatI GCNGC 4 cut(s) 1174, 2057, 2126, 2141
Sau3AI GATC 9 cut(s) 274, 535, 568, 629, 847, 1666, 1750, 1915, 1999
Sau96I GGNCC 1 cut(s) 1544
SchI GAGTC 4 cut(s) 267, 988, 1634, 2158
ScrFI CCNGG 5 cut(s) 465, 520, 1069, 1730, 2145
SduI GDGCHC 1 cut(s) 530
SfaNI GCATC 2 cut(s) 1255, 1483
SfcI CTRYAG 2 cut(s) 342, 1485
SfoI GGCGCC 1 cut(s) 1803
Sfr274I CTCGAG 1 cut(s) 1642
SfuI TTCGAA 1 cut(s) 988
SinI GGWCC 1 cut(s) 1544
SlaI CTCGAG 1 cut(s) 1642
SmiI ATTTAAAT 1 cut(s) 1045
SmiMI CAYNNNNRTG 2 cut(s) 212, 952
SmlI CTYRAG 4 cut(s) 543, 1091, 1227, 1642
SmoI CTYRAG 4 cut(s) 543, 1091, 1227, 1642
SphI GCATGC 1 cut(s) 921
SsiI CCGC 2 cut(s) 1466, 1536
SspDI GGCGCC 1 cut(s) 1801
SspI AATATT 1 cut(s) 1684
SspMI CTAG 7 cut(s) 74, 119, 408, 621, 756, 1677, 1691
StyD4I CCNGG 5 cut(s) 463, 518, 1067, 1728, 2143
StyI CCWWGG 1 cut(s) 1709
SwaI ATTTAAAT 1 cut(s) 1045
TaaI ACNGT 3 cut(s) 316, 789, 1436
TaiI ACGT 3 cut(s) 752, 970, 2194
TaqI TCGA 6 cut(s) 164, 988, 1575, 1643, 1832, 1983
TatI WGTACW 2 cut(s) 726, 1551
TfiI GAWTC 8 cut(s) 150, 248, 349, 371, 769, 1223, 1359, 2174
Tru1I TTAA 9 cut(s) 243, 263, 492, 794, 1028, 1044, 1649, 1926, 2024
Tru9I TTAA 9 cut(s) 243, 263, 492, 794, 1028, 1044, 1649, 1926, 2024
TscAI CASTG 9 cut(s) 277, 319, 794, 857, 1015, 1204, 1504, 1977, 2161
TseFI GTSAC 3 cut(s) 449, 2187, 2192
TseI GCWGC 4 cut(s) 1173, 2056, 2125, 2140
Tsp45I GTSAC 3 cut(s) 449, 2187, 2192
TspDTI ATGAA 7 cut(s) 321, 485, 782, 915, 1710, 1718, 2024
TspGWI ACGGA 5 cut(s) 37, 577, 1390, 1620, 2176
TspRI CASTG 9 cut(s) 277, 319, 794, 857, 1015, 1204, 1504, 1977, 2161
Van91I CCANNNNNTGG 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 1544
XagI CCTNNNNNAGG 1 cut(s) 543
XapI RAATTY 4 cut(s) 858, 1144, 1211, 1824
XbaI TCTAGA 1 cut(s) 755
XceI RCATGY 3 cut(s) 921, 1943, 2086
XhoI CTCGAG 1 cut(s) 1642
XmiI GTMKAC 1 cut(s) 746
XmnI GAANNNNTTC 1 cut(s) 1249
XspI CTAG 7 cut(s) 74, 119, 408, 621, 756, 1677, 1691
Zsp2I ATGCAT 1 cut(s) 1945
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.