Rorug05G0157800

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000201
Physical Location & Seq
Forward (+)
14703726 .. 14707111
3386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0157800.1

Sequence Viewer

Length: 1002 bp
ATGGAGAATTACAACAAAACCCAGCTTCAAAGTTTCCTCAAACATCTTCCTCCTGTTGAGTTCTGCTGTGTTTATGGGTCATCACTACACCCAAATCGTGACAATGCCAAGTCAACAATGGTGGATTGCATTCTTGGAGTATCAGATCCCCTACAATGGCATTCTGAGAATCTGAAGTTGAACAAGGATCACTATGCCTCTTGGATGGCGCTGCTCGGTGGGGCCAGACTGGTTACTAATGTTGCAGATTACATAGGTGTGGGAGTGCACTTCAATCCTTTTGTTAGTTGGAACGACAAGATGTTCAAGTATGGGGTTGTCAGCATGCACGACTTGGTGCAGGACATATCAAATTGGGAGAGGTTCTACTTGAGTGGTCGGTTACAAAAGCCGGTTCAAATAATTTCTGATAATTTGAATGTTGCAAATGTAAACTCGGTTAATTTGAGGGCTGCAATAGCTGCTGCTCTCCTTCTTTTGCCATCCAAGTTCACTGAGGAGGATCTGTATGCCAAAATATGTAGCCTCTCATATATGGGTGACTTGCGTATGCTCTTTGCAGAAGACAGAAATAAGGTGAAGAAAATAGTACAAGGGCAATTTGAGTTGTTTCGGTCAATGTATAAGCCATTTATTCAAGAGTATGAGACTAATGAGTTGTTGAGATACTCATTGTCTGGAAATCCGCAACCAGTCCTTTCTCAGGATTGTGATTTATCAGCAGCTCGATCCCTTGTTTCTTCTCTGCCCCCACTGATCAGAAGCCAAATGGGAGTGAAGCTTGGAGAAAAAAAAAGGCTGTGCGACTCTGGTCGAGTTATTAACGAAGTTGTGATTGGCTCAAGACAAGAGGCTGCTCAATGCATGCAGACAATTTTGAAGCGAAAGGTAATGGTTTCAAGTGCAAGACAGGCCGTCTCTGGTCTGCTGGCTGTTGGTGGTGTTAATGGCATGAGATATCTTGGCGCTAAAATGCGCAAGGCTTGGAATTCGTGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

333

Amino Acids

37.54

Weight (kDa)

9.29

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tam41_Mmp37 PF09139 9 - 327 2.4e-104 Phosphatidate cytidylyltransferase, mitochondrial
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 977
AciI CCGC 1 cut(s) 686
AclWI GGATC 4 cut(s) 140, 195, 510, 723
AcsI RAATTY 1 cut(s) 988
AcuI CTGAAG 1 cut(s) 194
AfaI GTAC 1 cut(s) 591
AfiI CCNNNNNNNGG 2 cut(s) 156, 703
AgsI TTSAA 9 cut(s) 29, 181, 274, 307, 398, 418, 638, 880, 900
AhdI GACNNNNNGTC 1 cut(s) 914
AjuI GAANNNNNNNTTGG 2 cut(s) 819, 851
AluBI AGCT 4 cut(s) 25, 461, 725, 781
AluI AGCT 4 cut(s) 25, 461, 725, 781
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 2 cut(s) 641, 922
Alw44I GTGCAC 1 cut(s) 266
AlwI GGATC 4 cut(s) 140, 195, 510, 723
AoxI GGCC 2 cut(s) 222, 912
ApaLI GTGCAC 1 cut(s) 266
ApeKI GCWGC 6 cut(s) 211, 452, 461, 464, 722, 854
ApoI RAATTY 1 cut(s) 988
AspLEI GCGC 3 cut(s) 211, 968, 978
AspS9I GGNCC 1 cut(s) 222
AsuHPI GGTGA 2 cut(s) 551, 589
BaeGI GKGCMC 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 570
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 6 cut(s) 198, 439, 448, 451, 734, 841
BccI CCATC 2 cut(s) 199, 490
BceAI ACGGC 1 cut(s) 899
BclI TGATCA 1 cut(s) 756
BcoDI GTCTC 2 cut(s) 641, 922
BfoI RGCGCY 2 cut(s) 212, 969
BisI GCNGC 6 cut(s) 212, 453, 462, 465, 723, 855
BlsI GCNGC 6 cut(s) 213, 454, 463, 466, 724, 856
BmeRI GACNNNNNGTC 1 cut(s) 914
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 223
BoxI GACNNNNGTC 1 cut(s) 810
BpiI GAAGAC 1 cut(s) 570
BpuEI CTTGAG 2 cut(s) 391, 826
BsaXI ACNNNNNCTCC 2 cut(s) 491, 521
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 703
Bse118I RCCGGY 1 cut(s) 391
Bse1I ACTGG 2 cut(s) 234, 692
BseGI GGATG 2 cut(s) 210, 482
BseLI CCNNNNNNNGG 2 cut(s) 156, 703
BseMII CTCAG 3 cut(s) 156, 486, 716
BseNI ACTGG 2 cut(s) 234, 692
BseRI GAGGAG 1 cut(s) 512
BseSI GKGCMC 1 cut(s) 270
BseXI GCAGC 6 cut(s) 198, 439, 448, 451, 734, 841
BseYI CCCAGC 1 cut(s) 21
BsgI GTGCAG 1 cut(s) 359
BshFI GGCC 2 cut(s) 224, 914
BsiHKAI GWGCWC 1 cut(s) 270
BsiSI CCGG 1 cut(s) 392
BslI CCNNNNNNNGG 2 cut(s) 156, 703
BsmAI GTCTC 2 cut(s) 641, 922
BsmBI CGTCTC 1 cut(s) 922
BsmI GAATGC 2 cut(s) 129, 160
BsnI GGCC 2 cut(s) 224, 914
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 5 cut(s) 145, 187, 502, 728, 756
BspACI CCGC 1 cut(s) 686
BspANI GGCC 2 cut(s) 224, 914
BspCNI CTCAG 3 cut(s) 157, 487, 715
BspLI GGNNCC 1 cut(s) 223
BspPI GGATC 4 cut(s) 140, 195, 510, 723
BsrFI RCCGGY 1 cut(s) 391
BsrI ACTGG 2 cut(s) 234, 692
BssAI RCCGGY 1 cut(s) 391
BssMI GATC 5 cut(s) 145, 187, 502, 728, 756
BstAPI GCANNNNNTGC 1 cut(s) 461
BstC8I GCNNGC 3 cut(s) 326, 866, 930
BstDEI CTNAG 3 cut(s) 165, 495, 702
BstENI CCTNNNNNAGG 1 cut(s) 701
BstF5I GGATG 2 cut(s) 210, 482
BstH2I RGCGCY 2 cut(s) 212, 969
BstHHI GCGC 3 cut(s) 211, 968, 978
BstKTI GATC 5 cut(s) 148, 190, 505, 731, 759
BstMAI GTCTC 2 cut(s) 641, 922
BstMBI GATC 5 cut(s) 145, 187, 502, 728, 756
BstMWI GCNNNNNNNGC 3 cut(s) 458, 461, 911
BstNSI RCATGY 2 cut(s) 328, 868
BstPAI GACNNNNGTC 1 cut(s) 810
BstSLI GKGCMC 1 cut(s) 270
BstV1I GCAGC 6 cut(s) 198, 439, 448, 451, 734, 841
BstV2I GAAGAC 1 cut(s) 570
BstX2I RGATCY 2 cut(s) 145, 502
BstYI RGATCY 2 cut(s) 145, 502
BsuRI GGCC 2 cut(s) 224, 914
BtsCI GGATG 2 cut(s) 210, 482
BtsIMutI CAGTG 2 cut(s) 492, 752
Cac8I GCNNGC 3 cut(s) 326, 866, 930
CfoI GCGC 3 cut(s) 211, 968, 978
Cfr10I RCCGGY 1 cut(s) 391
Cfr13I GGNCC 1 cut(s) 222
Csp6I GTAC 1 cut(s) 590
CspCI CAANNNNNGTGG 2 cut(s) 102, 137
CviAII CATG 3 cut(s) 325, 865, 952
CviQI GTAC 1 cut(s) 590
DdeI CTNAG 3 cut(s) 165, 495, 702
DpnI GATC 5 cut(s) 147, 189, 504, 730, 758
DpnII GATC 5 cut(s) 145, 187, 502, 728, 756
DriI GACNNNNNGTC 1 cut(s) 914
Eam1105I GACNNNNNGTC 1 cut(s) 914
Eco32I GATATC 1 cut(s) 959
Eco57I CTGAAG 1 cut(s) 194
EcoNI CCTNNNNNAGG 1 cut(s) 701
EcoRI GAATTC 1 cut(s) 988
EcoRV GATATC 1 cut(s) 959
EcoT22I ATGCAT 1 cut(s) 866
Esp3I CGTCTC 1 cut(s) 922
FaeI CATG 3 cut(s) 328, 868, 955
FatI CATG 3 cut(s) 324, 864, 951
FbaI TGATCA 1 cut(s) 756
Fnu4HI GCNGC 6 cut(s) 212, 453, 462, 465, 723, 855
FokI GGATG 2 cut(s) 217, 469
Fsp4HI GCNGC 6 cut(s) 212, 453, 462, 465, 723, 855
FspI TGCGCA 1 cut(s) 977
GlaI GCGC 3 cut(s) 210, 967, 977
GluI GCNGC 6 cut(s) 212, 453, 462, 465, 723, 855
GsaI CCCAGC 1 cut(s) 25
HaeII RGCGCY 2 cut(s) 212, 969
HaeIII GGCC 2 cut(s) 224, 914
HapII CCGG 1 cut(s) 392
HhaI GCGC 3 cut(s) 211, 968, 978
Hin1II CATG 3 cut(s) 328, 868, 955
Hin6I GCGC 3 cut(s) 209, 966, 976
HinP1I GCGC 3 cut(s) 209, 966, 976
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HindIII AAGCTT 1 cut(s) 779
HinfI GANTC 2 cut(s) 169, 806
HpaII CCGG 1 cut(s) 392
HphI GGTGA 2 cut(s) 551, 589
Hpy166II GTNNAC 4 cut(s) 114, 268, 433, 492
Hpy188I TCNGA 5 cut(s) 145, 166, 174, 409, 761
Hpy188III TCNNGA 5 cut(s) 98, 638, 678, 704, 843
Hpy8I GTNNAC 4 cut(s) 114, 268, 433, 492
HpyAV CCTTC 1 cut(s) 482
HpyF10VI GCNNNNNNNGC 3 cut(s) 458, 461, 911
HpyF3I CTNAG 3 cut(s) 165, 495, 702
Hsp92II CATG 3 cut(s) 328, 868, 955
HspAI GCGC 3 cut(s) 209, 966, 976
Ksp22I TGATCA 1 cut(s) 756
Kzo9I GATC 5 cut(s) 145, 187, 502, 728, 756
Lsp1109I GCAGC 6 cut(s) 198, 439, 448, 451, 734, 841
MaeIII GTNAC 4 cut(s) 98, 232, 381, 539
MalI GATC 5 cut(s) 147, 189, 504, 730, 758
MboI GATC 5 cut(s) 145, 187, 502, 728, 756
MboII GAAGA 4 cut(s) 38, 575, 592, 732
MflI RGATCY 2 cut(s) 145, 502
MhlI GDGCHC 1 cut(s) 270
MluCI AATT 8 cut(s) 7, 352, 402, 412, 442, 599, 873, 988
MlyI GAGTC 1 cut(s) 800
MmeI TCCRAC 1 cut(s) 269
MnlI CCTC 9 cut(s) 47, 60, 208, 354, 441, 490, 493, 536, 844
Mph1103I ATGCAT 1 cut(s) 866
MseI TTAA 3 cut(s) 441, 822, 945
MslI CAYNNNNRTG 1 cut(s) 257
MspI CCGG 1 cut(s) 392
Mva1269I GAATGC 2 cut(s) 129, 160
MwoI GCNNNNNNNGC 3 cut(s) 458, 461, 911
NdeII GATC 5 cut(s) 145, 187, 502, 728, 756
NlaIII CATG 3 cut(s) 328, 868, 955
NlaIV GGNNCC 1 cut(s) 223
NmuCI GTSAC 2 cut(s) 98, 539
NsbI TGCGCA 1 cut(s) 977
NsiI ATGCAT 1 cut(s) 866
NspI RCATGY 2 cut(s) 328, 868
PaeI GCATGC 2 cut(s) 328, 868
PctI GAATGC 2 cut(s) 129, 160
PfeI GAWTC 1 cut(s) 169
PkrI GCNGC 6 cut(s) 213, 454, 463, 466, 724, 856
PleI GAGTC 1 cut(s) 800
PpsI GAGTC 1 cut(s) 800
PshAI GACNNNNGTC 1 cut(s) 810
PspFI CCCAGC 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 1 cut(s) 222
PsuI RGATCY 2 cut(s) 145, 502
RsaI GTAC 1 cut(s) 591
RsaNI GTAC 1 cut(s) 590
RseI CAYNNNNRTG 1 cut(s) 257
SaqAI TTAA 3 cut(s) 441, 822, 945
SatI GCNGC 6 cut(s) 212, 453, 462, 465, 723, 855
Sau3AI GATC 5 cut(s) 145, 187, 502, 728, 756
Sau96I GGNCC 1 cut(s) 222
SchI GAGTC 1 cut(s) 800
SduI GDGCHC 1 cut(s) 270
SetI ASST 8 cut(s) 27, 259, 365, 463, 579, 727, 783, 891
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 2 cut(s) 370, 841
SmoI CTYRAG 2 cut(s) 370, 841
SphI GCATGC 2 cut(s) 328, 868
Sse9I AATT 8 cut(s) 7, 352, 402, 412, 442, 599, 873, 988
SsiI CCGC 1 cut(s) 686
TaqI TCGA 2 cut(s) 727, 814
TaqII GACCGA 1 cut(s) 603
TasI AATT 8 cut(s) 7, 352, 402, 412, 442, 599, 873, 988
TatI WGTACW 1 cut(s) 589
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 3 cut(s) 441, 822, 945
Tru9I TTAA 3 cut(s) 441, 822, 945
TscAI CASTG 2 cut(s) 499, 759
TseFI GTSAC 2 cut(s) 98, 539
TseI GCWGC 6 cut(s) 211, 452, 461, 464, 722, 854
Tsp45I GTSAC 2 cut(s) 98, 539
TspRI CASTG 2 cut(s) 499, 759
VneI GTGCAC 1 cut(s) 266
XagI CCTNNNNNAGG 1 cut(s) 701
XapI RAATTY 1 cut(s) 988
XceI RCATGY 2 cut(s) 328, 868
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
Zsp2I ATGCAT 1 cut(s) 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.