Rroxscaffold_5G00353610

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
31490529 .. 31491082
554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00353610.1

Sequence Viewer

Length: 438 bp
ATGCAAGGAAGGTTTTCGGTGAAGTCGGATGTATATAGCTATGGCGTTTTACTAATAGAAATCATTACCGGAAGAAAGAATAATGACTTTTACCATGAGGAACATCCCGACTCAAATTTAGTTGGGCAAGTCTGGAACTTGTGGAGCGAAGGTAAAGTCTTGCAAATAGTTGATTCGTCCATTGGTGAATCATACCCCGTCAATGAAGTTCTGAAATGTATTCAGATTGCCTTCTTGTGCCTGCAAGAGTATCCAACCGACCGGCCAACCATGTCCGAAGTTCTTTTAATGCTAGGTAACGATGCGGCTCTTCCTTCACCAAGAAAACCTACATTCTTATTGGAGAGAAGTAGCAATTCTATGGGTGGCAAGTTGTCAACTCGTGAAAGATATCACTCTCTAAATGACTTCACATGTAGTGTGGTAGAAGCTCGGTAG

Protein Analysis

145

Amino Acids

16.42

Weight (kDa)

5.35

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 2 - 95 7.3e-08 Protein tyrosine and serine/threonine kinase
DUF3403 PF11883 100 - 145 5.8e-06 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 305
AcoI YGGCCR 1 cut(s) 263
AcsI RAATTY 1 cut(s) 115
AflIII ACRYGT 1 cut(s) 413
AluBI AGCT 2 cut(s) 39, 431
AluI AGCT 2 cut(s) 39, 431
AoxI GGCC 1 cut(s) 263
ApoI RAATTY 1 cut(s) 115
ArsI GACNNNNNNTTYG 2 cut(s) 141, 173
Asp700I GAANNNNTTC 1 cut(s) 13
AsuHPI GGTGA 3 cut(s) 31, 197, 309
BauI CACGAG 1 cut(s) 381
BciVI GTATCC 1 cut(s) 261
BfaI CTAG 1 cut(s) 293
BfuI GTATCC 1 cut(s) 261
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
BmsI GCATC 1 cut(s) 292
BsaWI WCCGGW 1 cut(s) 68
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bse118I RCCGGY 1 cut(s) 261
BseGI GGATG 2 cut(s) 34, 103
Bsh1285I CGRYCG 1 cut(s) 262
BshFI GGCC 1 cut(s) 265
BsiEI CGRYCG 1 cut(s) 262
BsiSI CCGG 2 cut(s) 69, 262
BsnI GGCC 1 cut(s) 265
BspACI CCGC 1 cut(s) 305
BspANI GGCC 1 cut(s) 265
BspQI GCTCTTC 1 cut(s) 315
BsrFI RCCGGY 1 cut(s) 261
BssAI RCCGGY 1 cut(s) 261
BssSI CACGAG 1 cut(s) 381
Bst2BI CACGAG 1 cut(s) 381
Bst6I CTCTTC 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 242
BstF5I GGATG 2 cut(s) 34, 103
BstMCI CGRYCG 1 cut(s) 262
BstNSI RCATGY 1 cut(s) 417
BsuI GTATCC 1 cut(s) 261
BsuRI GGCC 1 cut(s) 265
BtsCI GGATG 2 cut(s) 34, 103
Cac8I GCNNGC 1 cut(s) 242
Cfr10I RCCGGY 1 cut(s) 261
CviAII CATG 3 cut(s) 95, 271, 414
CviJI RGCY 4 cut(s) 39, 265, 308, 431
CviKI_1 RGCY 4 cut(s) 39, 265, 308, 431
EaeI YGGCCR 1 cut(s) 263
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
Eco32I GATATC 1 cut(s) 392
EcoRV GATATC 1 cut(s) 392
FaeI CATG 3 cut(s) 98, 274, 417
FaiI YATR 8 cut(s) 34, 36, 42, 96, 193, 272, 362, 415
FatI CATG 3 cut(s) 94, 270, 413
Fnu4HI GCNGC 1 cut(s) 306
FokI GGATG 2 cut(s) 41, 90
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 1 cut(s) 293
GluI GCNGC 1 cut(s) 306
HaeIII GGCC 1 cut(s) 265
HapII CCGG 2 cut(s) 69, 262
Hin1II CATG 3 cut(s) 98, 274, 417
HincII GTYRAC 1 cut(s) 378
HindII GTYRAC 1 cut(s) 378
HinfI GANTC 3 cut(s) 110, 173, 188
HpaII CCGG 2 cut(s) 69, 262
HphI GGTGA 3 cut(s) 31, 197, 309
Hpy166II GTNNAC 1 cut(s) 378
Hpy188I TCNGA 4 cut(s) 28, 213, 225, 277
Hpy188III TCNNGA 3 cut(s) 107, 133, 383
Hpy8I GTNNAC 1 cut(s) 378
HpyAV CCTTC 4 cut(s) 3, 143, 241, 324
HpyCH4V TGCA 3 cut(s) 4, 163, 244
Hsp92II CATG 3 cut(s) 98, 274, 417
LguI GCTCTTC 1 cut(s) 315
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 4 cut(s) 82, 118, 254, 275
LweI GCATC 1 cut(s) 292
MaeI CTAG 1 cut(s) 293
MaeIII GTNAC 1 cut(s) 296
MboII GAAGA 2 cut(s) 84, 302
MluCI AATT 2 cut(s) 115, 355
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 2 cut(s) 6, 278
MnlI CCTC 1 cut(s) 91
MroXI GAANNNNTTC 1 cut(s) 13
MseI TTAA 1 cut(s) 287
MspI CCGG 2 cut(s) 69, 262
NlaIII CATG 3 cut(s) 98, 274, 417
NspI RCATGY 1 cut(s) 417
PciI ACATGT 1 cut(s) 413
PciSI GCTCTTC 1 cut(s) 315
PdmI GAANNNNTTC 1 cut(s) 13
PfeI GAWTC 2 cut(s) 173, 188
PkrI GCNGC 1 cut(s) 307
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PscI ACATGT 1 cut(s) 413
SapI GCTCTTC 1 cut(s) 315
SaqAI TTAA 1 cut(s) 287
SatI GCNGC 1 cut(s) 306
SchI GAGTC 1 cut(s) 104
SetI ASST 6 cut(s) 14, 41, 154, 298, 331, 433
SfaNI GCATC 1 cut(s) 292
Sse9I AATT 2 cut(s) 115, 355
SsiI CCGC 1 cut(s) 305
SspMI CTAG 1 cut(s) 293
TasI AATT 2 cut(s) 115, 355
TauI GCSGC 1 cut(s) 308
TfiI GAWTC 2 cut(s) 173, 188
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TspDTI ATGAA 1 cut(s) 219
XapI RAATTY 1 cut(s) 115
XceI RCATGY 1 cut(s) 417
XmnI GAANNNNTTC 1 cut(s) 13
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.