Rh5CG283600

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000201
Physical Location & Seq
Forward (+)
31036623 .. 31037207
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG283600.1

Sequence Viewer

Length: 585 bp
ATGGGCATTCTTTCATTCATTTTCATTGGAGTTTACTTGTTAAAAATCTCAGCTTTAGCTCAATCCACTTCCAGCCATGGCGGCTATGAATCGGGTTTCTTGAGTAGACCAAAGGGTGTTCATAGGAGGAGTCTTTTGGCCTCGACTTCTGGAGACTCTTGTGACAATAATGACCTTTGTGGCCCGAATGGAATGTGTGTCATCACCAATTCACCGGCATGTACTTGTTTAAATGGGTTTGAACCCAAGGCACCAGAAAAATATAACTATGGGGACAACTCAGGTGGTTGTGTCCGGGCTCAACCTTCCAACTGCCAAAACAAGGATGATGGGTTTGAGATATATACTGGGGTCAGATTGCCAGATACCACAGATTCTCGGGCTAACCAGAGTATGAGTGTCGAGGACTGTAGGGAAAATTGCTTGAACAACTGCTCTTGTGTGGCTTATGCAAGCTCTAATGTCAACGGCTGTACTATCTGGTTTGGTGATTTAATCAACATTAGGACTCTTTTTGGTGGTGGGGAGGATCTGTACATTCGGACACCTGCTTCAGAATTAAGTATATGCAATAGATTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

194

Amino Acids

20.86

Weight (kDa)

5.13

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 46 - 83 2.7e-09 S-locus glycoprotein domain
PAN_2 PF08276 105 - 168 1.4e-18 PAN-like domain
PAN_3 PF08277 122 - 174 8.8e-06 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 556
Acc36I ACCTGC 1 cut(s) 556
AccB1I GGYRCC 1 cut(s) 250
AccI GTMKAC 1 cut(s) 106
AciI CCGC 1 cut(s) 81
AclWI GGATC 1 cut(s) 537
AcuI CTGAAG 1 cut(s) 537
AfaI GTAC 3 cut(s) 223, 475, 536
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 2 cut(s) 242, 427
AluBI AGCT 3 cut(s) 53, 59, 456
AluI AGCT 3 cut(s) 53, 59, 456
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 1 cut(s) 537
Ama87I CYCGRG 1 cut(s) 378
AoxI GGCC 2 cut(s) 138, 181
AspS9I GGNCC 1 cut(s) 182
AsuC2I CCSGG 1 cut(s) 296
AsuHPI GGTGA 3 cut(s) 196, 204, 500
AvaI CYCGRG 1 cut(s) 378
BanI GGYRCC 1 cut(s) 250
BanII GRGCYC 1 cut(s) 301
BccI CCATC 1 cut(s) 323
BceAI ACGGC 1 cut(s) 484
BcnI CCSGG 1 cut(s) 296
BcoDI GTCTC 1 cut(s) 147
BfmI CTRYAG 1 cut(s) 409
BfuAI ACCTGC 1 cut(s) 556
BglI GCCNNNNNGGC 1 cut(s) 81
BisI GCNGC 1 cut(s) 82
BlsI GCNGC 1 cut(s) 83
Bme1390I CCNGG 1 cut(s) 296
BmeT110I CYCGRG 1 cut(s) 378
BmgT120I GGNCC 1 cut(s) 182
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 1 cut(s) 296
BmrI ACTGGG 1 cut(s) 357
BmuI ACTGGG 1 cut(s) 357
BpmI CTGGAG 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 121
BpuMI CCSGG 1 cut(s) 296
BsaJI CCNNGG 2 cut(s) 76, 246
BsaXI ACNNNNNCTCC 2 cut(s) 518, 548
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse118I RCCGGY 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 352
BseDI CCNNGG 2 cut(s) 76, 246
BseGI GGATG 1 cut(s) 331
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMII CTCAG 2 cut(s) 63, 294
BseNI ACTGG 1 cut(s) 352
BseRI GAGGAG 1 cut(s) 142
BshFI GGCC 2 cut(s) 140, 183
BshNI GGYRCC 1 cut(s) 250
BsiHKCI CYCGRG 1 cut(s) 378
BsiSI CCGG 2 cut(s) 215, 295
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 287
BsmI GAATGC 1 cut(s) 6
BsnI GGCC 2 cut(s) 140, 183
BsoBI CYCGRG 1 cut(s) 378
Bsp1286I GDGCHC 1 cut(s) 301
Bsp1407I TGTACA 1 cut(s) 534
Bsp143I GATC 1 cut(s) 529
Bsp19I CCATGG 1 cut(s) 76
BspACI CCGC 1 cut(s) 81
BspANI GGCC 2 cut(s) 140, 183
BspCNI CTCAG 2 cut(s) 62, 293
BspLI GGNNCC 1 cut(s) 252
BspMI ACCTGC 1 cut(s) 556
BspPI GGATC 1 cut(s) 537
BspT107I GGYRCC 1 cut(s) 250
BsrFI RCCGGY 1 cut(s) 214
BsrGI TGTACA 1 cut(s) 534
BsrI ACTGG 1 cut(s) 352
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 2 cut(s) 76, 246
BssMI GATC 1 cut(s) 529
BssT1I CCWWGG 2 cut(s) 76, 246
Bst4CI ACNGT 1 cut(s) 410
BstAUI TGTACA 1 cut(s) 534
BstC8I GCNNGC 1 cut(s) 454
BstDEI CTNAG 2 cut(s) 49, 280
BstDSI CCRYGG 1 cut(s) 76
BstF5I GGATG 1 cut(s) 331
BstKTI GATC 1 cut(s) 532
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 1 cut(s) 529
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstNSI RCATGY 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 294
BstSFI CTRYAG 1 cut(s) 409
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BsuRI GGCC 2 cut(s) 140, 183
BtgI CCRYGG 1 cut(s) 76
BtsCI GGATG 1 cut(s) 331
BveI ACCTGC 1 cut(s) 556
Cac8I GCNNGC 1 cut(s) 454
Cfr10I RCCGGY 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 182
Csp6I GTAC 3 cut(s) 222, 474, 535
CspCI CAANNNNNGTGG 2 cut(s) 265, 300
CviAII CATG 2 cut(s) 77, 219
CviQI GTAC 3 cut(s) 222, 474, 535
DdeI CTNAG 2 cut(s) 49, 280
DpnI GATC 1 cut(s) 531
DpnII GATC 1 cut(s) 529
DraI TTTAAA 1 cut(s) 231
Eco130I CCWWGG 2 cut(s) 76, 246
Eco24I GRGCYC 1 cut(s) 301
Eco57I CTGAAG 1 cut(s) 537
Eco88I CYCGRG 1 cut(s) 378
EcoT14I CCWWGG 2 cut(s) 76, 246
EcoT38I GRGCYC 1 cut(s) 301
ErhI CCWWGG 2 cut(s) 76, 246
FaeI CATG 2 cut(s) 80, 222
FaqI GGGAC 1 cut(s) 287
FatI CATG 2 cut(s) 76, 218
FblI GTMKAC 1 cut(s) 106
Fnu4HI GCNGC 1 cut(s) 82
FokI GGATG 1 cut(s) 338
FriOI GRGCYC 1 cut(s) 301
Fsp4HI GCNGC 1 cut(s) 82
GluI GCNGC 1 cut(s) 82
GsuI CTGGAG 1 cut(s) 171
HaeIII GGCC 2 cut(s) 140, 183
HapII CCGG 2 cut(s) 215, 295
Hin1II CATG 2 cut(s) 80, 222
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HinfI GANTC 5 cut(s) 89, 130, 155, 374, 508
HpaII CCGG 2 cut(s) 215, 295
HphI GGTGA 3 cut(s) 196, 204, 500
Hpy166II GTNNAC 3 cut(s) 34, 107, 466
Hpy188I TCNGA 3 cut(s) 356, 543, 556
Hpy188III TCNNGA 2 cut(s) 100, 150
Hpy8I GTNNAC 3 cut(s) 34, 107, 466
HpyAV CCTTC 1 cut(s) 315
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4V TGCA 2 cut(s) 452, 570
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 2 cut(s) 49, 280
Hsp92II CATG 2 cut(s) 80, 222
Kzo9I GATC 1 cut(s) 529
MaeIII GTNAC 1 cut(s) 161
MalI GATC 1 cut(s) 531
MboI GATC 1 cut(s) 529
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 1 cut(s) 301
MluCI AATT 3 cut(s) 208, 418, 557
MlyI GAGTC 3 cut(s) 139, 149, 502
MmeI TCCRAC 1 cut(s) 333
MnlI CCTC 4 cut(s) 120, 151, 397, 520
MseI TTAA 5 cut(s) 41, 230, 494, 560, 583
MslI CAYNNNNRTG 1 cut(s) 217
MspI CCGG 2 cut(s) 215, 295
MspR9I CCNGG 1 cut(s) 296
Mva1269I GAATGC 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 81
NciI CCSGG 1 cut(s) 296
NcoI CCATGG 1 cut(s) 76
NdeII GATC 1 cut(s) 529
NlaIII CATG 2 cut(s) 80, 222
NlaIV GGNNCC 1 cut(s) 252
NmuCI GTSAC 1 cut(s) 161
NspI RCATGY 1 cut(s) 222
PaqCI CACCTGC 1 cut(s) 556
PctI GAATGC 1 cut(s) 6
PfeI GAWTC 2 cut(s) 89, 374
PkrI GCNGC 1 cut(s) 83
PleI GAGTC 3 cut(s) 138, 149, 502
PpsI GAGTC 3 cut(s) 138, 149, 502
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 1 cut(s) 182
PsuI RGATCY 1 cut(s) 529
RsaI GTAC 3 cut(s) 223, 475, 536
RsaNI GTAC 3 cut(s) 222, 474, 535
RseI CAYNNNNRTG 1 cut(s) 217
SaqAI TTAA 5 cut(s) 41, 230, 494, 560, 583
SatI GCNGC 1 cut(s) 82
Sau3AI GATC 1 cut(s) 529
Sau96I GGNCC 1 cut(s) 182
SchI GAGTC 3 cut(s) 139, 149, 502
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 1 cut(s) 301
SetI ASST 7 cut(s) 55, 61, 177, 286, 307, 458, 550
SfcI CTRYAG 1 cut(s) 409
SmiMI CAYNNNNRTG 1 cut(s) 217
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
Sse9I AATT 3 cut(s) 208, 418, 557
SsiI CCGC 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 2 cut(s) 76, 246
TaaI ACNGT 1 cut(s) 410
TaqI TCGA 2 cut(s) 143, 402
TasI AATT 3 cut(s) 208, 418, 557
TatI WGTACW 3 cut(s) 221, 473, 534
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 2 cut(s) 89, 374
Tru1I TTAA 5 cut(s) 41, 230, 494, 560, 583
Tru9I TTAA 5 cut(s) 41, 230, 494, 560, 583
TseFI GTSAC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 4 cut(s) 7, 13, 102, 110
XceI RCATGY 1 cut(s) 222
XmiI GTMKAC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.