RchiOBHm_Chr5g0026771

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000201
Physical Location & Seq
Reverse (-)
20782535 .. 20783910
1376 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30635

Sequence Viewer

Length: 981 bp
ATGAATGCATCAGAGAAGGTGGTTTGTATTGGTCTATTTGATTTTGATAGTGGAGCTCTTCAAATCTTGTTATTCATGAGTGAAGATATGTCTTCTGTTTCAGAAGTCTGGAGAAACTACAAGAAAGGTTACCTTGGGGAAGACGGGGAAGACATGGAGTTGCCAACAATTGACTTGACAACAATCGGTAACGCCACCAATGACTTTTCAAGCAGCAACAAGCTGGGAGAAGGTGGTTTTGGACCAGTGTTCAAGGGCACATTAATAGGAGGAAAGGAAATTGCAGTAAAGAGGTTGTCTAAGAATTCTGGACAGGGAGTAAGAGAGTTCAAAAACGAAGTTATACTAATAGCTGGACTTCAGCACCGCAATCTTGTAAAGCTTCTGGGTTGTTGCACTGAGGACAATGAGAAAATGTTAATATACGAATTCTTGACCAATAGAAGCTTGGACTTCTTTATTTTTGACCAAGAAAGAAAGAAGTTGCTCGACTGGCCCAAGTGCTTCAACATTATTGATGGAATTGCTCGAGGGCTCCTATATCTTCACCAAGACTCTACATTAAGGATGATCCATAGAGATATGAAAGCTAGCAATATTTTGCTCGATAGTAATATGCACCCAAAGATTTCAGACTTTGGCCTGGCAAAAACATTTGGCGGTGATGAAAGCCGATCCAAAACAAACATAGTGGCTGGAACATATGGTTATATGGCTCCTGAATATGCAATAGATGAAATTTTCTCTATGAAATCTGATGTATTTAGCTTTGGAGTAGTACTATTAGAGATATTGAGTAGGGAAAGGAACAGGGGATTCTGTCATGCAGATCACCATCATAACCTTCTTGGACATGCATGGACACTGTGGATGCAAGATAAACAACTGGAATTAATTGATAAGACGTTACGTGATTCATGCACCATATCGGAAGTATTAAGGTGTCGTTACGTGATTCATGCACCATATCGGAAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

326

Amino Acids

37.04

Weight (kDa)

6.08

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 70 - 269 3.4e-41 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 72 - 267 4.2e-45 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 367, 660
AclWI GGATC 2 cut(s) 565, 669
AcsI RAATTY 3 cut(s) 304, 428, 738
AcuI CTGAAG 1 cut(s) 344
AfaI GTAC 1 cut(s) 780
AgsI TTSAA 5 cut(s) 62, 210, 253, 331, 508
AjnI CCWGG 1 cut(s) 642
AjuI GAANNNNNNNTTGG 2 cut(s) 222, 254
AluBI AGCT 7 cut(s) 56, 223, 353, 382, 447, 590, 768
AluI AGCT 7 cut(s) 56, 223, 353, 382, 447, 590, 768
Alw21I GWGCWC 1 cut(s) 58
AlwI GGATC 2 cut(s) 565, 669
Ama87I CYCGRG 1 cut(s) 528
AoxI GGCC 2 cut(s) 494, 640
ApeKI GCWGC 1 cut(s) 213
ApoI RAATTY 3 cut(s) 304, 428, 738
AseI ATTAAT 2 cut(s) 263, 893
AspS9I GGNCC 2 cut(s) 242, 495
AsuHPI GGTGA 3 cut(s) 539, 674, 824
AsuNHI GCTAGC 1 cut(s) 590
AvaI CYCGRG 1 cut(s) 528
AvaII GGWCC 1 cut(s) 242
BaeGI GKGCMC 1 cut(s) 260
BanII GRGCYC 2 cut(s) 58, 537
BbsI GAAGAC 3 cut(s) 84, 147, 156
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 1 cut(s) 225
BccI CCATC 2 cut(s) 512, 843
BciT130I CCWGG 1 cut(s) 644
BfaI CTAG 1 cut(s) 591
BisI GCNGC 1 cut(s) 214
BlsI GCNGC 1 cut(s) 215
BmcAI AGTACT 1 cut(s) 780
Bme1390I CCNGG 1 cut(s) 644
Bme18I GGWCC 1 cut(s) 242
BmeT110I CYCGRG 1 cut(s) 528
BmgT120I GGNCC 2 cut(s) 242, 495
BmiI GGNNCC 2 cut(s) 536, 717
BmrFI CCNGG 1 cut(s) 644
BmsI GCATC 2 cut(s) 17, 861
BmtI GCTAGC 1 cut(s) 594
BpiI GAAGAC 3 cut(s) 84, 147, 156
BpmI CTGGAG 1 cut(s) 130
BsaAI YACGTR 2 cut(s) 911, 952
BsaBI GATNNNNATC 1 cut(s) 834
BsaJI CCNNGG 1 cut(s) 133
Bse1I ACTGG 3 cut(s) 245, 497, 891
Bse8I GATNNNNATC 1 cut(s) 834
BseBI CCWGG 1 cut(s) 644
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 2 cut(s) 573, 876
BseJI GATNNNNATC 1 cut(s) 834
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 3 cut(s) 245, 497, 891
BseSI GKGCMC 1 cut(s) 260
BseXI GCAGC 1 cut(s) 225
BseYI CCCAGC 1 cut(s) 223
BshFI GGCC 2 cut(s) 496, 642
BsiHKAI GWGCWC 1 cut(s) 58
BsiHKCI CYCGRG 1 cut(s) 528
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 2 cut(s) 496, 642
BsoBI CYCGRG 1 cut(s) 528
Bsp1286I GDGCHC 3 cut(s) 58, 260, 537
Bsp143I GATC 3 cut(s) 570, 674, 829
BspACI CCGC 2 cut(s) 367, 660
BspANI GGCC 2 cut(s) 496, 642
BspCNI CTCAG 1 cut(s) 391
BspHI TCATGA 1 cut(s) 75
BspLI GGNNCC 2 cut(s) 536, 717
BspOI GCTAGC 1 cut(s) 594
BspPI GGATC 2 cut(s) 565, 669
BspQI GCTCTTC 1 cut(s) 63
BsrI ACTGG 3 cut(s) 245, 497, 891
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 3 cut(s) 570, 674, 829
BssT1I CCWWGG 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 644
Bst4CI ACNGT 1 cut(s) 867
Bst6I CTCTTC 1 cut(s) 63
BstBAI YACGTR 2 cut(s) 911, 952
BstC8I GCNNGC 1 cut(s) 592
BstDEI CTNAG 2 cut(s) 300, 399
BstEII GGTNACC 1 cut(s) 128
BstF5I GGATG 2 cut(s) 573, 876
BstKTI GATC 3 cut(s) 573, 677, 832
BstMBI GATC 3 cut(s) 570, 674, 829
BstMWI GCNNNNNNNGC 1 cut(s) 493
BstNI CCWGG 1 cut(s) 644
BstNSI RCATGY 1 cut(s) 857
BstPI GGTNACC 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 642
BstSLI GKGCMC 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 225
BstV2I GAAGAC 3 cut(s) 84, 147, 156
BsuRI GGCC 2 cut(s) 496, 642
BtsCI GGATG 2 cut(s) 573, 876
BtsIMutI CAGTG 3 cut(s) 252, 396, 863
Cac8I GCNNGC 1 cut(s) 592
CciI TCATGA 1 cut(s) 75
Cfr13I GGNCC 2 cut(s) 242, 495
Csp6I GTAC 1 cut(s) 779
CspCI CAANNNNNGTGG 2 cut(s) 672, 707
CviAII CATG 7 cut(s) 76, 154, 824, 854, 858, 918, 959
CviQI GTAC 1 cut(s) 779
DdeI CTNAG 2 cut(s) 300, 399
DpnI GATC 3 cut(s) 572, 676, 831
DpnII GATC 3 cut(s) 570, 674, 829
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Ecl136II GAGCTC 1 cut(s) 56
Eco130I CCWWGG 1 cut(s) 133
Eco24I GRGCYC 2 cut(s) 58, 537
Eco47I GGWCC 1 cut(s) 242
Eco53kI GAGCTC 1 cut(s) 56
Eco57I CTGAAG 1 cut(s) 344
Eco88I CYCGRG 1 cut(s) 528
Eco91I GGTNACC 1 cut(s) 128
EcoICRI GAGCTC 1 cut(s) 56
EcoO65I GGTNACC 1 cut(s) 128
EcoRI GAATTC 2 cut(s) 304, 428
EcoRII CCWGG 1 cut(s) 642
EcoT14I CCWWGG 1 cut(s) 133
EcoT22I ATGCAT 2 cut(s) 10, 859
EcoT38I GRGCYC 2 cut(s) 58, 537
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 7 cut(s) 79, 157, 827, 857, 861, 921, 962
FalI AAGNNNNNCTT 2 cut(s) 117, 149
FatI CATG 7 cut(s) 75, 153, 823, 853, 857, 917, 958
FauNDI CATATG 1 cut(s) 703
Fnu4HI GCNGC 1 cut(s) 214
FokI GGATG 2 cut(s) 580, 883
FriOI GRGCYC 2 cut(s) 58, 537
Fsp4HI GCNGC 1 cut(s) 214
FspBI CTAG 1 cut(s) 591
GluI GCNGC 1 cut(s) 214
GsaI CCCAGC 1 cut(s) 227
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 2 cut(s) 496, 642
Hin1II CATG 7 cut(s) 79, 157, 827, 857, 861, 921, 962
HindIII AAGCTT 2 cut(s) 380, 445
HinfI GANTC 4 cut(s) 554, 816, 914, 955
HphI GGTGA 3 cut(s) 539, 674, 824
Hpy188I TCNGA 6 cut(s) 13, 103, 634, 757, 931, 972
Hpy188III TCNNGA 5 cut(s) 76, 109, 309, 433, 719
HpyAV CCTTC 3 cut(s) 10, 224, 854
HpyCH4III ACNGT 1 cut(s) 867
HpyCH4IV ACGT 3 cut(s) 905, 910, 951
HpyF10VI GCNNNNNNNGC 1 cut(s) 493
HpyF3I CTNAG 2 cut(s) 300, 399
HpySE526I ACGT 3 cut(s) 905, 910, 951
Hsp92II CATG 7 cut(s) 79, 157, 827, 857, 861, 921, 962
Kzo9I GATC 3 cut(s) 570, 674, 829
LguI GCTCTTC 1 cut(s) 63
LmnI GCTCC 3 cut(s) 53, 540, 721
Lsp1109I GCAGC 1 cut(s) 225
LweI GCATC 2 cut(s) 17, 861
MaeI CTAG 1 cut(s) 591
MaeII ACGT 3 cut(s) 905, 910, 951
MaeIII GTNAC 4 cut(s) 128, 188, 906, 947
MalI GATC 3 cut(s) 572, 676, 831
MboI GATC 3 cut(s) 570, 674, 829
MboII GAAGA 6 cut(s) 50, 84, 95, 152, 161, 536
MfeI CAATTG 1 cut(s) 168
MhlI GDGCHC 3 cut(s) 58, 260, 537
MluCI AATT 8 cut(s) 168, 279, 304, 428, 522, 738, 890, 894
MlyI GAGTC 1 cut(s) 548
MnlI CCTC 4 cut(s) 263, 285, 394, 524
Mph1103I ATGCAT 2 cut(s) 10, 859
MseI TTAA 6 cut(s) 263, 419, 563, 893, 938, 979
MspR9I CCNGG 1 cut(s) 644
MunI CAATTG 1 cut(s) 168
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 1 cut(s) 644
MwoI GCNNNNNNNGC 1 cut(s) 493
NdeI CATATG 1 cut(s) 703
NdeII GATC 3 cut(s) 570, 674, 829
NheI GCTAGC 1 cut(s) 590
NlaIII CATG 7 cut(s) 79, 157, 827, 857, 861, 921, 962
NlaIV GGNNCC 2 cut(s) 536, 717
NsiI ATGCAT 2 cut(s) 10, 859
NspI RCATGY 1 cut(s) 857
PaeR7I CTCGAG 1 cut(s) 528
PagI TCATGA 1 cut(s) 75
PciSI GCTCTTC 1 cut(s) 63
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 3 cut(s) 816, 914, 955
PkrI GCNGC 1 cut(s) 215
PleI GAGTC 1 cut(s) 548
PpsI GAGTC 1 cut(s) 548
Ppu21I YACGTR 2 cut(s) 911, 952
PshBI ATTAAT 2 cut(s) 263, 893
Psp124BI GAGCTC 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 642
PspEI GGTNACC 1 cut(s) 128
PspFI CCCAGC 1 cut(s) 223
PspGI CCWGG 1 cut(s) 642
PspN4I GGNNCC 2 cut(s) 536, 717
PspPI GGNCC 2 cut(s) 242, 495
PspXI VCTCGAGB 1 cut(s) 528
RsaI GTAC 1 cut(s) 780
RsaNI GTAC 1 cut(s) 779
SacI GAGCTC 1 cut(s) 58
SapI GCTCTTC 1 cut(s) 63
SaqAI TTAA 6 cut(s) 263, 419, 563, 893, 938, 979
SatI GCNGC 1 cut(s) 214
Sau3AI GATC 3 cut(s) 570, 674, 829
Sau96I GGNCC 2 cut(s) 242, 495
ScaI AGTACT 1 cut(s) 780
SchI GAGTC 1 cut(s) 548
ScrFI CCNGG 1 cut(s) 644
SduI GDGCHC 3 cut(s) 58, 260, 537
SfaNI GCATC 2 cut(s) 17, 861
Sfr274I CTCGAG 1 cut(s) 528
SinI GGWCC 1 cut(s) 242
SlaI CTCGAG 1 cut(s) 528
SmlI CTYRAG 1 cut(s) 528
SmoI CTYRAG 1 cut(s) 528
Sse9I AATT 8 cut(s) 168, 279, 304, 428, 522, 738, 890, 894
SsiI CCGC 2 cut(s) 367, 660
SspI AATATT 1 cut(s) 598
SspMI CTAG 1 cut(s) 591
SstI GAGCTC 1 cut(s) 58
StyD4I CCNGG 1 cut(s) 642
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 867
TaiI ACGT 3 cut(s) 908, 913, 954
TaqI TCGA 3 cut(s) 489, 529, 606
TasI AATT 8 cut(s) 168, 279, 304, 428, 522, 738, 890, 894
TatI WGTACW 1 cut(s) 778
TfiI GAWTC 3 cut(s) 816, 914, 955
Tru1I TTAA 6 cut(s) 263, 419, 563, 893, 938, 979
Tru9I TTAA 6 cut(s) 263, 419, 563, 893, 938, 979
TscAI CASTG 3 cut(s) 252, 403, 870
TseI GCWGC 1 cut(s) 213
TspDTI ATGAA 8 cut(s) 17, 64, 599, 681, 750, 764, 906, 947
TspRI CASTG 3 cut(s) 252, 403, 870
VpaK11BI GGWCC 1 cut(s) 242
VspI ATTAAT 2 cut(s) 263, 893
XapI RAATTY 3 cut(s) 304, 428, 738
XceI RCATGY 1 cut(s) 857
XcmI CCANNNNNNNNNTGG 1 cut(s) 445
XhoI CTCGAG 1 cut(s) 528
XspI CTAG 1 cut(s) 591
ZrmI AGTACT 1 cut(s) 780
Zsp2I ATGCAT 2 cut(s) 10, 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.