RLG00000032890

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
20497786 .. 20499882
2097 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032890

Sequence Viewer

Length: 480 bp
ATGAACCTCAAGGAATGTGAGATGTTGTGTGTGAAGAAGTGCTCCTGCACAGCTTATGCAAATTCCAATATCAGGGAAGGTGGAAGTGGGTGCTTGCTGTGGTTCAGTGATCTGATTGGCATAAGAAATCTCACTGAAAATGAGCAAGATATCTATGTTAGCTGTATCAGAGGAAGTGGTTACATGTCCCCAGAATACACAATTGATGGTTTCTACTCAATAAAATCCGATGTCTACGGAGTTTTGGTGCTAGAGATATTGTTCAGAGAAGGCAGGTGCATTGAACTTCTTGATCCATCGGTAGAGGACTCCAGCACTCTACATGGAGTTGTGCGATCGATTCATGTAGGTGCATTGCCTCAACCTCAGAAGCCTGGTTTTTTTAGTGAAAGGAATCTGACAGAACTTGAAGATTCTACAGATGGGGCTACAGAATCTTCAGCTAATGAACTCACTATTACACAAGTGGGGGCTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

160

Amino Acids

17.52

Weight (kDa)

4.6

Isoelectric Point (pI)

60.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 1 - 39 9.8e-14 PAN-like domain
DUF3403 PF11883 118 - 159 6.1e-06 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 264
Acc36I ACCTGC 1 cut(s) 264
AccI GTMKAC 1 cut(s) 234
AclWI GGATC 1 cut(s) 287
AcsI RAATTY 1 cut(s) 61
AcuI CTGAAG 1 cut(s) 423
AfiI CCNNNNNNNGG 1 cut(s) 72
AflIII ACRYGT 1 cut(s) 183
AgsI TTSAA 2 cut(s) 284, 410
AjnI CCWGG 1 cut(s) 373
AluBI AGCT 3 cut(s) 53, 162, 443
AluI AGCT 3 cut(s) 53, 162, 443
Alw21I GWGCWC 1 cut(s) 44
AlwI GGATC 1 cut(s) 287
ApoI RAATTY 1 cut(s) 61
BanII GRGCYC 1 cut(s) 475
Bbv12I GWGCWC 1 cut(s) 44
BccI CCATC 3 cut(s) 200, 304, 416
BciT130I CCWGG 1 cut(s) 375
BfaI CTAG 1 cut(s) 251
BfmI CTRYAG 2 cut(s) 417, 429
BfuAI ACCTGC 1 cut(s) 264
Bme1390I CCNGG 1 cut(s) 375
BmrFI CCNGG 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 295
Bsa29I ATCGAT 1 cut(s) 338
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 353
BseBI CCWGG 1 cut(s) 375
BseCI ATCGAT 1 cut(s) 338
BseLI CCNNNNNNNGG 1 cut(s) 72
BseMI GCAATG 1 cut(s) 353
BseMII CTCAG 1 cut(s) 380
BsgI GTGCAG 1 cut(s) 31
Bsh1285I CGRYCG 1 cut(s) 338
BshVI ATCGAT 1 cut(s) 338
BsiEI CGRYCG 1 cut(s) 338
BsiHKAI GWGCWC 1 cut(s) 44
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 1 cut(s) 72
BsmFI GGGAC 1 cut(s) 172
Bsp1286I GDGCHC 2 cut(s) 44, 475
Bsp143I GATC 3 cut(s) 109, 292, 335
BspCNI CTCAG 1 cut(s) 379
BspDI ATCGAT 1 cut(s) 338
BspMI ACCTGC 1 cut(s) 264
BspPI GGATC 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 353
BssMI GATC 3 cut(s) 109, 292, 335
Bst2UI CCWGG 1 cut(s) 375
BstC8I GCNNGC 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 366
BstKTI GATC 3 cut(s) 112, 295, 338
BstMBI GATC 3 cut(s) 109, 292, 335
BstMCI CGRYCG 1 cut(s) 338
BstNI CCWGG 1 cut(s) 375
BstNSI RCATGY 1 cut(s) 187
BstSCI CCNGG 1 cut(s) 373
BstSFI CTRYAG 2 cut(s) 417, 429
Bsu15I ATCGAT 1 cut(s) 338
BsuTUI ATCGAT 1 cut(s) 338
BtsIMutI CAGTG 2 cut(s) 112, 132
BveI ACCTGC 1 cut(s) 264
Cac8I GCNNGC 1 cut(s) 95
ClaI ATCGAT 1 cut(s) 338
CviAII CATG 3 cut(s) 184, 323, 344
CviJI RGCY 6 cut(s) 53, 162, 373, 428, 443, 473
CviKI_1 RGCY 6 cut(s) 53, 162, 373, 428, 443, 473
DdeI CTNAG 1 cut(s) 366
DpnI GATC 3 cut(s) 111, 294, 337
DpnII GATC 3 cut(s) 109, 292, 335
Eco24I GRGCYC 1 cut(s) 475
Eco32I GATATC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 423
EcoRII CCWGG 1 cut(s) 373
EcoRV GATATC 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 475
FaeI CATG 3 cut(s) 187, 326, 347
FaiI YATR 6 cut(s) 57, 122, 156, 185, 324, 345
FaqI GGGAC 1 cut(s) 172
FatI CATG 3 cut(s) 183, 322, 343
FblI GTMKAC 1 cut(s) 234
FriOI GRGCYC 1 cut(s) 475
FspBI CTAG 1 cut(s) 251
GsuI CTGGAG 1 cut(s) 295
Hin1II CATG 3 cut(s) 187, 326, 347
HinfI GANTC 5 cut(s) 308, 340, 394, 413, 434
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 6 cut(s) 114, 170, 229, 266, 369, 399
Hpy188III TCNNGA 1 cut(s) 290
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 2 cut(s) 71, 263
HpyCH4V TGCA 4 cut(s) 48, 59, 279, 353
HpyF3I CTNAG 1 cut(s) 366
Hsp92II CATG 3 cut(s) 187, 326, 347
Kzo9I GATC 3 cut(s) 109, 292, 335
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 7 cut(s) 58, 58, 204, 259, 325, 360, 387
MaeI CTAG 1 cut(s) 251
MaeIII GTNAC 1 cut(s) 179
MalI GATC 3 cut(s) 111, 294, 337
MboI GATC 3 cut(s) 109, 292, 335
MboII GAAGA 3 cut(s) 46, 422, 429
MfeI CAATTG 1 cut(s) 201
MhlI GDGCHC 2 cut(s) 44, 475
MluCI AATT 2 cut(s) 61, 201
MlyI GAGTC 1 cut(s) 302
MnlI CCTC 5 cut(s) 17, 164, 298, 369, 375
MslI CAYNNNNRTG 1 cut(s) 348
MspR9I CCNGG 1 cut(s) 375
MunI CAATTG 1 cut(s) 201
MvaI CCWGG 1 cut(s) 375
NdeII GATC 3 cut(s) 109, 292, 335
NlaIII CATG 3 cut(s) 187, 326, 347
NspI RCATGY 1 cut(s) 187
PaqCI CACCTGC 1 cut(s) 264
PciI ACATGT 1 cut(s) 183
PfeI GAWTC 4 cut(s) 340, 394, 413, 434
Ple19I CGATCG 1 cut(s) 338
PleI GAGTC 1 cut(s) 302
PpsI GAGTC 1 cut(s) 302
PscI ACATGT 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 373
PspGI CCWGG 1 cut(s) 373
PvuI CGATCG 1 cut(s) 338
RseI CAYNNNNRTG 1 cut(s) 348
Sau3AI GATC 3 cut(s) 109, 292, 335
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 1 cut(s) 375
SduI GDGCHC 2 cut(s) 44, 475
SetI ASST 8 cut(s) 9, 55, 82, 164, 278, 352, 367, 445
SfcI CTRYAG 2 cut(s) 417, 429
SmiMI CAYNNNNRTG 1 cut(s) 348
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 2 cut(s) 61, 201
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 373
TaqI TCGA 2 cut(s) 338, 475
TasI AATT 2 cut(s) 61, 201
TfiI GAWTC 4 cut(s) 340, 394, 413, 434
TscAI CASTG 2 cut(s) 112, 139
TspDTI ATGAA 3 cut(s) 17, 332, 462
TspGWI ACGGA 1 cut(s) 252
TspRI CASTG 2 cut(s) 112, 139
XapI RAATTY 1 cut(s) 61
XceI RCATGY 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 234
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.