pycom03g16480

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000201
Physical Location & Seq
Forward (+)
17681679 .. 17683172
1494 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g16480.1

Sequence Viewer

Length: 873 bp
ATGGACACCATTTTTTCAGTCATGTTCATTGCAATTCATGTGTTCCTCTCTTTCTTCAAACCCTCACTTGCAGCTGAAGCTATTACTCAATCCCAAACCCAAAGTGATGGCAGATTTCAATTGGGTTTTTTCAAGTCTGGTGTTTACGGGAGTCTACTGGCTTCAGCTTCAAGAGACAGCTGTGACAATTCCATCCGTTGCGGCCCCAACGGAATGTGTGATATTAGCAATTCAGAAGTTTGCAGCTGCTTAAAAGGATTCCAACCAAAAGACCCTCAGAATTGGGACTATGCAGATAATTCGGCAGGTTGCGTGCGTGTTAAGCCGCTGATGTGCCAAACCAGAGATGTGTTTTTTAAATATGGGGGTGTGAAGTTGCCGGATGCCACAAATTCTCGGGTGGAACAAAGTAGGAGTGTTGAGGAATGCAAGGCAAGTTGCTTGAATAACTGTTCTTGTATTGCTTATGCAAGCTCTAGTGTCAAAGGAGGAGGCGTTGACTGCACTGTTTGGTTTGGGGATCTGATCAGCCTTAGGCAGCTTACTGACAGCGGGCAGGATCTATATGTCCGAATCCTTGCTTCTGAATCAAAAAATTCATCTAAGACAAAGATAATAGCGATAGCTGTATCTGCTGTTTCCATTGTTTTGGGAATTTTCTTAGCCGTCTACTACACTTACAGAAGGAGGCAAAAGTTCAAAGAGAAACTGGGGAAAGATGGAATGATGGGTCAGAACACTGCAGGACAGAAAGAAGACCTGGAGCTACCATTGTTTAGCTTGTCCACATTAATCACAGCAACTGATAACTTCTCGTTCAACAAGAAGCTTGGAGAAGGTGGTTTTGGATCTGTGTACAAGGTAAATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

291

Amino Acids

31.7

Weight (kDa)

8.54

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 51 - 90 6.3e-10 S-locus glycoprotein domain
PAN_2 PF08276 112 - 177 8.4e-19 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 296
AccI GTMKAC 2 cut(s) 154, 669
AciI CCGC 3 cut(s) 201, 326, 552
AclWI GGATC 3 cut(s) 528, 567, 856
AcsI RAATTY 4 cut(s) 391, 595, 654, 865
AcuI CTGAAG 2 cut(s) 96, 147
AfaI GTAC 1 cut(s) 857
AgsI TTSAA 7 cut(s) 58, 119, 133, 171, 445, 700, 820
AjnI CCWGG 1 cut(s) 759
AjuI GAANNNNNNNTTGG 2 cut(s) 828, 860
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 3 cut(s) 528, 567, 856
AlwNI CAGNNNCTG 1 cut(s) 803
Ama87I CYCGRG 1 cut(s) 396
AoxI GGCC 1 cut(s) 202
ApeKI GCWGC 4 cut(s) 71, 243, 246, 538
ApoI RAATTY 4 cut(s) 391, 595, 654, 865
AseI ATTAAT 1 cut(s) 791
AspS9I GGNCC 1 cut(s) 203
AvaI CYCGRG 1 cut(s) 396
AxyI CCTNAGG 1 cut(s) 533
BbsI GAAGAC 1 cut(s) 762
BbvI GCAGC 4 cut(s) 83, 233, 255, 550
BccI CCATC 4 cut(s) 101, 200, 713, 721
BceAI ACGGC 1 cut(s) 650
BcgI CGANNNNNNTGC 2 cut(s) 282, 316
BciT130I CCWGG 1 cut(s) 761
BclI TGATCA 1 cut(s) 525
BcoDI GTCTC 1 cut(s) 168
BfaI CTAG 1 cut(s) 477
BfmI CTRYAG 1 cut(s) 741
BfuAI ACCTGC 1 cut(s) 296
BisI GCNGC 6 cut(s) 72, 202, 244, 247, 326, 539
BlsI GCNGC 6 cut(s) 73, 203, 245, 248, 327, 540
Bme1390I CCNGG 1 cut(s) 761
BmeT110I CYCGRG 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 205
BmrFI CCNGG 1 cut(s) 761
BmrI ACTGGG 1 cut(s) 719
BmsI GCATC 1 cut(s) 373
BmuI ACTGGG 1 cut(s) 719
BpiI GAAGAC 1 cut(s) 762
BpmI CTGGAG 1 cut(s) 782
BsaXI ACNNNNNCTCC 2 cut(s) 480, 510
Bse1I ACTGG 2 cut(s) 162, 714
Bse21I CCTNAGG 1 cut(s) 533
Bse3DI GCAATG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 761
BseGI GGATG 2 cut(s) 192, 388
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 290
BseNI ACTGG 2 cut(s) 162, 714
BseRI GAGGAG 1 cut(s) 504
BseXI GCAGC 4 cut(s) 83, 233, 255, 550
BsgI GTGCAG 1 cut(s) 487
BshFI GGCC 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 396
BsiSI CCGG 1 cut(s) 380
BslFI GGGAC 1 cut(s) 299
BsmAI GTCTC 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 431
BsnI GGCC 1 cut(s) 204
BsoBI CYCGRG 1 cut(s) 396
Bsp1407I TGTACA 1 cut(s) 855
Bsp143I GATC 4 cut(s) 520, 525, 559, 848
BspACI CCGC 3 cut(s) 201, 326, 552
BspANI GGCC 1 cut(s) 204
BspCNI CTCAG 1 cut(s) 289
BspLI GGNNCC 1 cut(s) 205
BspMAI CTGCAG 1 cut(s) 745
BspMI ACCTGC 1 cut(s) 296
BspPI GGATC 3 cut(s) 528, 567, 856
BsrDI GCAATG 1 cut(s) 27
BsrGI TGTACA 1 cut(s) 855
BsrI ACTGG 2 cut(s) 162, 714
BssMI GATC 4 cut(s) 520, 525, 559, 848
Bst2UI CCWGG 1 cut(s) 761
Bst4CI ACNGT 2 cut(s) 452, 508
BstAUI TGTACA 1 cut(s) 855
BstC8I GCNNGC 3 cut(s) 314, 472, 554
BstDEI CTNAG 4 cut(s) 276, 533, 603, 661
BstF5I GGATG 2 cut(s) 192, 388
BstKTI GATC 4 cut(s) 523, 528, 562, 851
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 4 cut(s) 520, 525, 559, 848
BstMWI GCNNNNNNNGC 4 cut(s) 77, 322, 501, 632
BstNI CCWGG 1 cut(s) 761
BstSCI CCNGG 1 cut(s) 759
BstSFI CTRYAG 1 cut(s) 741
BstV1I GCAGC 4 cut(s) 83, 233, 255, 550
BstV2I GAAGAC 1 cut(s) 762
BstX2I RGATCY 3 cut(s) 520, 559, 848
BstXI CCANNNNNNTGG 2 cut(s) 107, 649
BstYI RGATCY 3 cut(s) 520, 559, 848
Bsu36I CCTNAGG 1 cut(s) 533
BsuRI GGCC 1 cut(s) 204
BtsCI GGATG 2 cut(s) 192, 388
BtsI GCAGTG 1 cut(s) 738
BtsIMutI CAGTG 2 cut(s) 504, 738
BveI ACCTGC 1 cut(s) 296
Cac8I GCNNGC 3 cut(s) 314, 472, 554
CaiI CAGNNNCTG 1 cut(s) 803
Cfr13I GGNCC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 856
CviAII CATG 2 cut(s) 22, 38
CviQI GTAC 1 cut(s) 856
DdeI CTNAG 4 cut(s) 276, 533, 603, 661
DpnI GATC 4 cut(s) 522, 527, 561, 850
DpnII GATC 4 cut(s) 520, 525, 559, 848
DraI TTTAAA 1 cut(s) 358
Eco57I CTGAAG 2 cut(s) 96, 147
Eco81I CCTNAGG 1 cut(s) 533
Eco88I CYCGRG 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 759
FaeI CATG 2 cut(s) 25, 41
FaiI YATR 7 cut(s) 23, 39, 291, 363, 468, 565, 567
FaqI GGGAC 1 cut(s) 299
FatI CATG 2 cut(s) 21, 37
FauI CCCGC 1 cut(s) 545
FbaI TGATCA 1 cut(s) 525
FblI GTMKAC 2 cut(s) 154, 669
Fnu4HI GCNGC 6 cut(s) 72, 202, 244, 247, 326, 539
FokI GGATG 2 cut(s) 179, 395
Fsp4HI GCNGC 6 cut(s) 72, 202, 244, 247, 326, 539
FspBI CTAG 1 cut(s) 477
GluI GCNGC 6 cut(s) 72, 202, 244, 247, 326, 539
GsuI CTGGAG 1 cut(s) 782
HaeIII GGCC 1 cut(s) 204
HapII CCGG 1 cut(s) 380
Hin1II CATG 2 cut(s) 25, 41
HincII GTYRAC 1 cut(s) 499
HindII GTYRAC 1 cut(s) 499
HindIII AAGCTT 1 cut(s) 827
HinfI GANTC 4 cut(s) 151, 258, 573, 587
HpaII CCGG 1 cut(s) 380
Hpy166II GTNNAC 6 cut(s) 145, 155, 499, 670, 786, 856
Hpy188I TCNGA 6 cut(s) 235, 279, 525, 572, 586, 735
Hpy188III TCNNGA 1 cut(s) 171
Hpy8I GTNNAC 6 cut(s) 145, 155, 499, 670, 786, 856
HpyAV CCTTC 2 cut(s) 678, 830
HpyCH4III ACNGT 2 cut(s) 452, 508
HpyCH4V TGCA 8 cut(s) 32, 71, 243, 293, 429, 470, 504, 743
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 322, 501, 632
HpyF3I CTNAG 4 cut(s) 276, 533, 603, 661
Hsp92II CATG 2 cut(s) 25, 41
Ksp22I TGATCA 1 cut(s) 525
Kzo9I GATC 4 cut(s) 520, 525, 559, 848
LmnI GCTCC 1 cut(s) 763
Lsp1109I GCAGC 4 cut(s) 83, 233, 255, 550
LweI GCATC 1 cut(s) 373
MaeI CTAG 1 cut(s) 477
MaeIII GTNAC 1 cut(s) 182
MalI GATC 4 cut(s) 522, 527, 561, 850
MboI GATC 4 cut(s) 520, 525, 559, 848
MboII GAAGA 2 cut(s) 46, 767
MfeI CAATTG 1 cut(s) 119
MflI RGATCY 3 cut(s) 520, 559, 848
MlyI GAGTC 1 cut(s) 160
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 7 cut(s) 56, 73, 285, 415, 482, 485, 681
MseI TTAA 4 cut(s) 251, 321, 357, 791
MspA1I CMGCKG 5 cut(s) 74, 180, 246, 328, 552
MspI CCGG 1 cut(s) 380
MspR9I CCNGG 1 cut(s) 761
MunI CAATTG 1 cut(s) 119
Mva1269I GAATGC 1 cut(s) 431
MvaI CCWGG 1 cut(s) 761
MwoI GCNNNNNNNGC 4 cut(s) 77, 322, 501, 632
NdeII GATC 4 cut(s) 520, 525, 559, 848
NlaIII CATG 2 cut(s) 25, 41
NlaIV GGNNCC 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 182
PctI GAATGC 1 cut(s) 431
PfeI GAWTC 3 cut(s) 258, 573, 587
PkrI GCNGC 6 cut(s) 73, 203, 245, 248, 327, 540
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
PshBI ATTAAT 1 cut(s) 791
Psp6I CCWGG 1 cut(s) 759
PspGI CCWGG 1 cut(s) 759
PspN4I GGNNCC 1 cut(s) 205
PspPI GGNCC 1 cut(s) 203
PstI CTGCAG 1 cut(s) 745
PstNI CAGNNNCTG 1 cut(s) 803
PsuI RGATCY 3 cut(s) 520, 559, 848
PvuII CAGCTG 3 cut(s) 74, 180, 246
RsaI GTAC 1 cut(s) 857
RsaNI GTAC 1 cut(s) 856
SaqAI TTAA 4 cut(s) 251, 321, 357, 791
SatI GCNGC 6 cut(s) 72, 202, 244, 247, 326, 539
Sau3AI GATC 4 cut(s) 520, 525, 559, 848
Sau96I GGNCC 1 cut(s) 203
SchI GAGTC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 761
SfaNI GCATC 1 cut(s) 373
SfcI CTRYAG 1 cut(s) 741
SsiI CCGC 3 cut(s) 201, 326, 552
SspMI CTAG 1 cut(s) 477
StyD4I CCNGG 1 cut(s) 759
TaaI ACNGT 2 cut(s) 452, 508
TatI WGTACW 1 cut(s) 855
TauI GCSGC 2 cut(s) 204, 328
TfiI GAWTC 3 cut(s) 258, 573, 587
Tru1I TTAA 4 cut(s) 251, 321, 357, 791
Tru9I TTAA 4 cut(s) 251, 321, 357, 791
TscAI CASTG 2 cut(s) 511, 745
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 4 cut(s) 71, 243, 246, 538
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 3 cut(s) 16, 26, 588
TspGWI ACGGA 2 cut(s) 185, 225
TspRI CASTG 2 cut(s) 511, 745
VspI ATTAAT 1 cut(s) 791
XapI RAATTY 4 cut(s) 391, 595, 654, 865
XmiI GTMKAC 2 cut(s) 154, 669
XspI CTAG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.