pycom09g02440

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000201
Physical Location & Seq
Forward (+)
1833258 .. 1834317
1060 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g02440.2

Sequence Viewer

Length: 762 bp
ATGAAAGGAGAAGAAAAGATCTTACTCTATGAGTACATGCCTAACAAAAGTTTAGACTCCTTTATATTTGATCATACAAAAAGCATGTTTCTCAACTGGGAGATGCGTTATAGCATCATTTTGGGAATCGCTCGAGGGCTTCTTTATCTTCATCAAGATTCCAGATTGAGGATCATTCATAGAGATTTGAAAACCAGCAACATTCTCCTAGATGAGGAGATGAACCCCAAAATATCTGACTTCGGTTTGGCGAGGATTGTTGGAGGCAAGGAAACTCAGGCAAATACAAACACTGTAGTTAGAACTTATGGTTACATGTCTCCAAAGTATGCATTGGATGGAACTTTCTCAGTGAAATCAGATGTCTTTAGCTTTGGCGTGGTTCTTCTTGAGATAATCAGTGGAAAAAAGAACACAGGCTTTTATCAATCGAAACAAACTTTCAGCCTCATAAATTATGCATGGAGACTCTGGACAGAAAACAAGGTGCTGGATTTAATGGACAAGACTCTGGAAGAAAGTTGCAACGAAAGCCAGTTTATCAAGTGTGTCAATGTCGGACTCTTATGCGTACAAGAAGATCCGAGCGATCGCCACTCCATGTCGAATGTGATCACCATGCTCGACAGTGAAACTGCAATGTGTCCGGCTCCTAAACAGCCAGCATTTCTCACAAGGAGAGGCAACTCCAGCACAGCTTCTTCTTCTAGTAAGCCAGAAATTATATCTGAAATAACCAATAGTCTGGTTGAAGGTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin GUB_WAK_bind PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

254

Amino Acids

28.71

Weight (kDa)

6.45

Isoelectric Point (pI)

52.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 179, 575
AfaI GTAC 2 cut(s) 35, 573
AfiI CCNNNNNNNGG 2 cut(s) 168, 214
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 2 cut(s) 190, 752
AluBI AGCT 2 cut(s) 372, 698
AluI AGCT 2 cut(s) 372, 698
Alw26I GTCTC 2 cut(s) 324, 460
AlwI GGATC 2 cut(s) 179, 575
Ama87I CYCGRG 1 cut(s) 132
AsiSI GCGATCGC 1 cut(s) 592
AsuHPI GGTGA 1 cut(s) 607
AvaI CYCGRG 1 cut(s) 132
BccI CCATC 1 cut(s) 332
BclI TGATCA 2 cut(s) 70, 612
BcoDI GTCTC 2 cut(s) 324, 460
BfaI CTAG 2 cut(s) 209, 708
BfmI CTRYAG 1 cut(s) 294
BglII AGATCT 1 cut(s) 18
BmeT110I CYCGRG 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 651
BmrI ACTGGG 1 cut(s) 106
BmsI GCATC 2 cut(s) 93, 123
BmuI ACTGGG 1 cut(s) 106
BpmI CTGGAG 1 cut(s) 673
BpuEI CTTGAG 1 cut(s) 410
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 214
Bse1I ACTGG 2 cut(s) 101, 535
Bse3DI GCAATG 1 cut(s) 645
BseGI GGATG 1 cut(s) 343
BseLI CCNNNNNNNGG 2 cut(s) 168, 214
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 2 cut(s) 290, 363
BseNI ACTGG 2 cut(s) 101, 535
BseRI GAGGAG 1 cut(s) 230
Bsh1285I CGRYCG 1 cut(s) 592
BsiEI CGRYCG 1 cut(s) 592
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 1 cut(s) 647
BslI CCNNNNNNNGG 2 cut(s) 168, 214
BsmAI GTCTC 2 cut(s) 324, 460
BsoBI CYCGRG 1 cut(s) 132
Bsp143I GATC 6 cut(s) 18, 70, 171, 580, 589, 612
BspCNI CTCAG 2 cut(s) 289, 362
BspLI GGNNCC 1 cut(s) 651
BspPI GGATC 2 cut(s) 179, 575
BsrDI GCAATG 1 cut(s) 645
BsrI ACTGG 2 cut(s) 101, 535
BssMI GATC 6 cut(s) 18, 70, 171, 580, 589, 612
Bst4CI ACNGT 2 cut(s) 295, 629
BstC8I GCNNGC 1 cut(s) 663
BstDEI CTNAG 2 cut(s) 276, 349
BstENI CCTNNNNNAGG 1 cut(s) 212
BstF5I GGATG 1 cut(s) 343
BstKTI GATC 6 cut(s) 21, 73, 174, 583, 592, 615
BstMAI GTCTC 2 cut(s) 324, 460
BstMBI GATC 6 cut(s) 18, 70, 171, 580, 589, 612
BstMCI CGRYCG 1 cut(s) 592
BstMWI GCNNNNNNNGC 2 cut(s) 531, 690
BstNSI RCATGY 3 cut(s) 40, 88, 319
BstSFI CTRYAG 1 cut(s) 294
BstX2I RGATCY 2 cut(s) 18, 580
BstXI CCANNNNNNTGG 1 cut(s) 745
BstYI RGATCY 2 cut(s) 18, 580
BtsCI GGATG 1 cut(s) 343
BtsIMutI CAGTG 4 cut(s) 291, 357, 406, 634
Cac8I GCNNGC 1 cut(s) 663
Csp6I GTAC 2 cut(s) 34, 572
CviAII CATG 6 cut(s) 37, 85, 316, 462, 601, 619
CviJI RGCY 9 cut(s) 139, 372, 420, 447, 534, 650, 661, 698, 715
CviKI_1 RGCY 9 cut(s) 139, 372, 420, 447, 534, 650, 661, 698, 715
CviQI GTAC 2 cut(s) 34, 572
DdeI CTNAG 2 cut(s) 276, 349
DpnI GATC 6 cut(s) 20, 72, 173, 582, 591, 614
DpnII GATC 6 cut(s) 18, 70, 171, 580, 589, 612
Eco88I CYCGRG 1 cut(s) 132
EcoNI CCTNNNNNAGG 1 cut(s) 212
EcoT22I ATGCAT 2 cut(s) 334, 463
FaeI CATG 6 cut(s) 40, 88, 319, 465, 604, 622
FatI CATG 6 cut(s) 36, 84, 315, 461, 600, 618
FbaI TGATCA 2 cut(s) 70, 612
FokI GGATG 1 cut(s) 350
FspBI CTAG 2 cut(s) 209, 708
GsuI CTGGAG 1 cut(s) 673
HapII CCGG 1 cut(s) 647
Hin1II CATG 6 cut(s) 40, 88, 319, 465, 604, 622
HinfI GANTC 6 cut(s) 56, 126, 158, 468, 508, 561
HpaII CCGG 1 cut(s) 647
HphI GGTGA 1 cut(s) 607
Hpy188I TCNGA 5 cut(s) 238, 361, 560, 585, 730
Hpy188III TCNNGA 5 cut(s) 155, 162, 389, 472, 512
HpyAV CCTTC 1 cut(s) 746
HpyCH4III ACNGT 2 cut(s) 295, 629
HpyCH4V TGCA 4 cut(s) 332, 461, 525, 638
HpyF10VI GCNNNNNNNGC 2 cut(s) 531, 690
HpyF3I CTNAG 2 cut(s) 276, 349
Hsp92II CATG 6 cut(s) 40, 88, 319, 465, 604, 622
Ksp22I TGATCA 2 cut(s) 70, 612
Kzo9I GATC 6 cut(s) 18, 70, 171, 580, 589, 612
LmnI GCTCC 1 cut(s) 655
LweI GCATC 2 cut(s) 93, 123
MaeI CTAG 2 cut(s) 209, 708
MaeIII GTNAC 1 cut(s) 311
MalI GATC 6 cut(s) 20, 72, 173, 582, 591, 614
MboI GATC 6 cut(s) 18, 70, 171, 580, 589, 612
MboII GAAGA 7 cut(s) 23, 140, 377, 527, 590, 693, 696
MflI RGATCY 2 cut(s) 18, 580
MluCI AATT 2 cut(s) 454, 720
MlyI GAGTC 4 cut(s) 50, 462, 502, 555
MmeI TCCRAC 2 cut(s) 241, 538
MnlI CCTC 7 cut(s) 128, 162, 208, 246, 257, 458, 674
Mph1103I ATGCAT 2 cut(s) 334, 463
MseI TTAA 1 cut(s) 497
MspI CCGG 1 cut(s) 647
MwoI GCNNNNNNNGC 2 cut(s) 531, 690
NdeII GATC 6 cut(s) 18, 70, 171, 580, 589, 612
NlaIII CATG 6 cut(s) 40, 88, 319, 465, 604, 622
NlaIV GGNNCC 1 cut(s) 651
NsiI ATGCAT 2 cut(s) 334, 463
NspI RCATGY 3 cut(s) 40, 88, 319
PaeR7I CTCGAG 1 cut(s) 132
PciI ACATGT 1 cut(s) 315
PfeI GAWTC 2 cut(s) 126, 158
Ple19I CGATCG 1 cut(s) 592
PleI GAGTC 4 cut(s) 50, 462, 502, 555
PpsI GAGTC 4 cut(s) 50, 462, 502, 555
PscI ACATGT 1 cut(s) 315
PspN4I GGNNCC 1 cut(s) 651
PspXI VCTCGAGB 1 cut(s) 132
PsuI RGATCY 2 cut(s) 18, 580
PvuI CGATCG 1 cut(s) 592
RgaI GCGATCGC 1 cut(s) 592
RsaI GTAC 2 cut(s) 35, 573
RsaNI GTAC 2 cut(s) 34, 572
SaqAI TTAA 1 cut(s) 497
Sau3AI GATC 6 cut(s) 18, 70, 171, 580, 589, 612
SchI GAGTC 4 cut(s) 50, 462, 502, 555
SetI ASST 4 cut(s) 374, 489, 700, 757
SfaAI GCGATCGC 1 cut(s) 592
SfaNI GCATC 2 cut(s) 93, 123
SfcI CTRYAG 1 cut(s) 294
Sfr274I CTCGAG 1 cut(s) 132
SgfI GCGATCGC 1 cut(s) 592
SlaI CTCGAG 1 cut(s) 132
SmlI CTYRAG 2 cut(s) 132, 389
SmoI CTYRAG 2 cut(s) 132, 389
Sse9I AATT 2 cut(s) 454, 720
SspMI CTAG 2 cut(s) 209, 708
TaaI ACNGT 2 cut(s) 295, 629
TaqI TCGA 4 cut(s) 133, 431, 605, 624
TasI AATT 2 cut(s) 454, 720
TatI WGTACW 1 cut(s) 33
TfiI GAWTC 2 cut(s) 126, 158
Tru1I TTAA 1 cut(s) 497
Tru9I TTAA 1 cut(s) 497
TscAI CASTG 4 cut(s) 298, 357, 406, 634
TspDTI ATGAA 4 cut(s) 17, 140, 167, 236
TspRI CASTG 4 cut(s) 298, 357, 406, 634
XagI CCTNNNNNAGG 1 cut(s) 212
XceI RCATGY 3 cut(s) 40, 88, 319
XhoI CTCGAG 1 cut(s) 132
XspI CTAG 2 cut(s) 209, 708
Zsp2I ATGCAT 2 cut(s) 334, 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.