Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0000201

Physical Location & Seq

Genomic Coordinates Forward (+)

11890806 .. 11891765

Gene Structure 960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G195200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCATTTTCCAAAAATTTCAGACTTTGGCTTGGCTAGAACATTAGTTGGAGGAGATCAGACTGGTGGAACTACAAACAGAGTGGTTGGAACATACGGTTACATGGCACCTAAATATGCTATCTATGGGCTGTTTTCTGTCAAATCTGATGTCTTTAGCTTTGGTATTTTGGTGTTGGAGGTCATAAGTGGAAGGAAAAATAAGGGATTCTACCATCCAAACCACAGTCATAACCTTATTGGACATGCATGGACATTATGGAATCAAGGGAGGCCTTTAGAGCTGATTGATATGCGTTTAGGAAGCTCATATACTCTATCAGAAGTGTTACGTTGCATCCATGTTAGTCTTTTATGCGTGCAACATCATCCTGAGGATAGACCAACCATGGCATCTGTGCTTATAATGTTGGGAAGTGAGATTCCCTTGGCTCAGCCCAAGCAACCTGGTTTCTTTATAGAAACGGAATCACTTGAAGCAGGCGTTTCTCCAGGTAATCAATCGTCAACAAACAAAATATCGATTACACTTATGGAGGCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

182

Amino Acids

19.89

Weight (kDa)

7.09

Isoelectric Point (pI)

44.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21366
fragaria_vesca	FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica	MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica	Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis	pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis	RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata	RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora	Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa	Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha	Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana	Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	404
AccB1I	GGYRCC	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	15
AgsI	TTSAA	1 cut(s)	476
AjnI	CCWGG	2 cut(s)	445, 490
AluBI	AGCT	3 cut(s)	159, 283, 306
AluI	AGCT	3 cut(s)	159, 283, 306
AoxI	GGCC	1 cut(s)	272
ApoI	RAATTY	1 cut(s)	15
ArsI	GACNNNNNNTTYG	2 cut(s)	135, 167
AxyI	CCTNAGG	1 cut(s)	372
BanI	GGYRCC	1 cut(s)	106
BarI	GAAGNNNNNNTAC	2 cut(s)	295, 327
BccI	CCATC	1 cut(s)	222
BciT130I	CCWGG	2 cut(s)	447, 492
BfaI	CTAG	1 cut(s)	36
BlpI	GCTNAGC	1 cut(s)	432
Bme1390I	CCNGG	2 cut(s)	447, 492
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	2 cut(s)	447, 492
BmsI	GCATC	2 cut(s)	345, 401
BpmI	CTGGAG	1 cut(s)	474
Bpu1102I	GCTNAGC	1 cut(s)	432
Bsa29I	ATCGAT	1 cut(s)	521
BsaJI	CCNNGG	2 cut(s)	387, 426
Bse1I	ACTGG	1 cut(s)	67
Bse21I	CCTNAGG	1 cut(s)	372
BseBI	CCWGG	2 cut(s)	447, 492
BseCI	ATCGAT	1 cut(s)	521
BseDI	CCNNGG	2 cut(s)	387, 426
BseGI	GGATG	3 cut(s)	214, 336, 367
BseMII	CTCAG	2 cut(s)	363, 446
BseNI	ACTGG	1 cut(s)	67
BseRI	GAGGAG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	274
BshNI	GGYRCC	1 cut(s)	106
BshVI	ATCGAT	1 cut(s)	521
BsnI	GGCC	1 cut(s)	274
Bsp143I	GATC	1 cut(s)	55
Bsp1720I	GCTNAGC	1 cut(s)	432
Bsp19I	CCATGG	1 cut(s)	387
BspANI	GGCC	1 cut(s)	274
BspCNI	CTCAG	2 cut(s)	364, 445
BspDI	ATCGAT	1 cut(s)	521
BspLI	GGNNCC	1 cut(s)	108
BspT107I	GGYRCC	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	67
BssECI	CCNNGG	2 cut(s)	387, 426
BssMI	GATC	1 cut(s)	55
BssT1I	CCWWGG	2 cut(s)	387, 426
Bst2UI	CCWGG	2 cut(s)	447, 492
Bst4CI	ACNGT	2 cut(s)	98, 227
BstC8I	GCNNGC	2 cut(s)	359, 481
BstDEI	CTNAG	2 cut(s)	372, 432
BstDSI	CCRYGG	1 cut(s)	387
BstF5I	GGATG	3 cut(s)	214, 336, 367
BstKTI	GATC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	1 cut(s)	280
BstNI	CCWGG	2 cut(s)	447, 492
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	2 cut(s)	445, 490
Bsu15I	ATCGAT	1 cut(s)	521
Bsu36I	CCTNAGG	1 cut(s)	372
BsuRI	GGCC	1 cut(s)	274
BsuTUI	ATCGAT	1 cut(s)	521
BtgI	CCRYGG	1 cut(s)	387
BtsCI	GGATG	3 cut(s)	214, 336, 367
Cac8I	GCNNGC	2 cut(s)	359, 481
ClaI	ATCGAT	1 cut(s)	521
CsiI	ACCWGGT	1 cut(s)	445
CspCI	CAANNNNNGTGG	2 cut(s)	63, 98
CviAII	CATG	5 cut(s)	103, 245, 249, 341, 388
DdeI	CTNAG	2 cut(s)	372, 432
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	387, 426
Eco147I	AGGCCT	1 cut(s)	274
Eco81I	CCTNAGG	1 cut(s)	372
EcoRII	CCWGG	2 cut(s)	445, 490
EcoT14I	CCWWGG	2 cut(s)	387, 426
EcoT22I	ATGCAT	2 cut(s)	6, 250
ErhI	CCWWGG	2 cut(s)	387, 426
FaeI	CATG	5 cut(s)	106, 248, 252, 344, 391
FatI	CATG	5 cut(s)	102, 244, 248, 340, 387
FokI	GGATG	3 cut(s)	201, 323, 354
FspBI	CTAG	1 cut(s)	36
GsuI	CTGGAG	1 cut(s)	474
HaeIII	GGCC	1 cut(s)	274
Hin1II	CATG	5 cut(s)	106, 248, 252, 344, 391
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HinfI	GANTC	4 cut(s)	207, 262, 421, 467
Hpy166II	GTNNAC	1 cut(s)	507
Hpy188I	TCNGA	4 cut(s)	22, 60, 148, 322
Hpy188III	TCNNGA	1 cut(s)	371
Hpy8I	GTNNAC	1 cut(s)	507
HpyAV	CCTTC	1 cut(s)	186
HpyCH4III	ACNGT	2 cut(s)	98, 227
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	4 cut(s)	4, 248, 336, 361
HpyF10VI	GCNNNNNNNGC	1 cut(s)	280
HpyF3I	CTNAG	2 cut(s)	372, 432
HpySE526I	ACGT	1 cut(s)	331
Hsp92II	CATG	5 cut(s)	106, 248, 252, 344, 391
Kzo9I	GATC	1 cut(s)	55
LpnPI	CCDG	7 cut(s)	48, 384, 432, 459, 465, 477, 504
LweI	GCATC	2 cut(s)	345, 401
MabI	ACCWGGT	1 cut(s)	445
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	2 cut(s)	98, 327
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MluCI	AATT	1 cut(s)	15
MmeI	TCCRAC	3 cut(s)	28, 67, 156
MnlI	CCTC	5 cut(s)	44, 172, 264, 367, 529
Mph1103I	ATGCAT	2 cut(s)	6, 250
MseI	TTAA	1 cut(s)	544
MspR9I	CCNGG	2 cut(s)	447, 492
MvaI	CCWGG	2 cut(s)	447, 492
MwoI	GCNNNNNNNGC	1 cut(s)	280
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	5 cut(s)	106, 248, 252, 344, 391
NlaIV	GGNNCC	1 cut(s)	108
NsiI	ATGCAT	2 cut(s)	6, 250
NspI	RCATGY	1 cut(s)	248
PceI	AGGCCT	1 cut(s)	274
PfeI	GAWTC	4 cut(s)	207, 262, 421, 467
PsiI	TTATAA	1 cut(s)	404
Psp6I	CCWGG	2 cut(s)	445, 490
PspGI	CCWGG	2 cut(s)	445, 490
PspN4I	GGNNCC	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	544
Sau3AI	GATC	1 cut(s)	55
ScrFI	CCNGG	2 cut(s)	447, 492
SetI	ASST	9 cut(s)	112, 161, 183, 237, 285, 308, 334, 448, 496
SexAI	ACCWGGT	1 cut(s)	445
SfaNI	GCATC	2 cut(s)	345, 401
Sse9I	AATT	1 cut(s)	15
SseBI	AGGCCT	1 cut(s)	274
SspMI	CTAG	1 cut(s)	36
StuI	AGGCCT	1 cut(s)	274
StyD4I	CCNGG	2 cut(s)	445, 490
StyI	CCWWGG	2 cut(s)	387, 426
TaaI	ACNGT	2 cut(s)	98, 227
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	1 cut(s)	521
TasI	AATT	1 cut(s)	15
TfiI	GAWTC	4 cut(s)	207, 262, 421, 467
Tru1I	TTAA	1 cut(s)	544
Tru9I	TTAA	1 cut(s)	544
TspGWI	ACGGA	1 cut(s)	479
XapI	RAATTY	1 cut(s)	15
XceI	RCATGY	1 cut(s)	248
XspI	CTAG	1 cut(s)	36
Zsp2I	ATGCAT	2 cut(s)	6, 250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.