Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8109542.1

Orthogroup ID

OG0000201

Physical Location & Seq

Genomic Coordinates Reverse (-)

198 .. 530

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8109542.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atgatcgatgtaaatggttttcaggtttgggacttgtggaaagaaggtcgagcctcggaaatcatcgacacatctttgggtgaatcttatcccataagtgaagttctacggtgtattcaaatagcgcttctctgcgtgcaagagtacgtagacgaccggccgaccatgtcaaaagttgtgtccatgttaggcaacgatgcagctcttccttcaccaagaaaacctggatttttgttgaagagaagtaactataccagtggagaccccagcacaagtactggagatgctaattccataaattatgttacatgcactatagttgaagctcgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

110

Amino Acids

12.12

Weight (kDa)

4.65

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21366
fragaria_vesca	FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica	MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica	Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis	pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis	RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata	RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora	Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa	Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha	Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana	Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	150
AcoI	YGGCCR	1 cut(s)	158
AfaI	GTAC	2 cut(s)	146, 277
AfeI	AGCGCT	1 cut(s)	126
AgsI	TTSAA	3 cut(s)	119, 238, 323
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	2 cut(s)	203, 326
AluI	AGCT	2 cut(s)	203, 326
Alw26I	GTCTC	1 cut(s)	255
Aor51HI	AGCGCT	1 cut(s)	126
AoxI	GGCC	1 cut(s)	158
ApeKI	GCWGC	1 cut(s)	200
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AspLEI	GCGC	1 cut(s)	127
AsuHPI	GGTGA	2 cut(s)	92, 204
BarI	GAAGNNNNNNTAC	2 cut(s)	235, 267
BbvI	GCAGC	1 cut(s)	212
BciT130I	CCWGG	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	315
BfoI	RGCGCY	1 cut(s)	128
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
BmcAI	AGTACT	1 cut(s)	277
Bme1390I	CCNGG	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	225
BmsI	GCATC	2 cut(s)	187, 274
BpmI	CTGGAG	1 cut(s)	300
Bsa29I	ATCGAT	1 cut(s)	6
BsaAI	YACGTR	1 cut(s)	148
BsaI	GGTCTC	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	54
Bse118I	RCCGGY	1 cut(s)	156
Bse1I	ACTGG	2 cut(s)	255, 283
BseBI	CCWGG	1 cut(s)	225
BseCI	ATCGAT	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	54
BseNI	ACTGG	2 cut(s)	255, 283
BseX3I	CGGCCG	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	212
BseYI	CCCAGC	1 cut(s)	266
Bsh1285I	CGRYCG	2 cut(s)	157, 161
BshFI	GGCC	1 cut(s)	160
BshVI	ATCGAT	1 cut(s)	6
BsiEI	CGRYCG	2 cut(s)	157, 161
BsiSI	CCGG	1 cut(s)	157
BslFI	GGGAC	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	1 cut(s)	160
Bso31I	GGTCTC	1 cut(s)	255
Bsp143I	GATC	1 cut(s)	3
BspANI	GGCC	1 cut(s)	160
BspDI	ATCGAT	1 cut(s)	6
BspQI	GCTCTTC	1 cut(s)	210
BspTNI	GGTCTC	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	255, 283
BssAI	RCCGGY	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	1 cut(s)	3
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	111
Bst6I	CTCTTC	2 cut(s)	210, 233
BstBAI	YACGTR	1 cut(s)	148
BstC8I	GCNNGC	2 cut(s)	137, 328
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	1 cut(s)	3
BstMCI	CGRYCG	2 cut(s)	157, 161
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	223
BstSFI	CTRYAG	1 cut(s)	315
BstSNI	TACGTA	1 cut(s)	148
BstV1I	GCAGC	1 cut(s)	212
BstZI	CGGCCG	1 cut(s)	158
Bsu15I	ATCGAT	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	160
BsuTUI	ATCGAT	1 cut(s)	6
BtsIMutI	CAGTG	1 cut(s)	262
Cac8I	GCNNGC	2 cut(s)	137, 328
CfoI	GCGC	1 cut(s)	127
Cfr10I	RCCGGY	1 cut(s)	156
ClaI	ATCGAT	1 cut(s)	6
Csp6I	GTAC	2 cut(s)	145, 276
CviAII	CATG	3 cut(s)	166, 184, 309
CviJI	RGCY	4 cut(s)	53, 160, 203, 326
CviKI_1	RGCY	4 cut(s)	53, 160, 203, 326
CviQI	GTAC	2 cut(s)	145, 276
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EaeI	YGGCCR	1 cut(s)	158
EagI	CGGCCG	1 cut(s)	158
Eam1104I	CTCTTC	2 cut(s)	210, 233
EarI	CTCTTC	2 cut(s)	210, 233
EclXI	CGGCCG	1 cut(s)	158
Eco105I	TACGTA	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	255
Eco47III	AGCGCT	1 cut(s)	126
Eco52I	CGGCCG	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	223
FaeI	CATG	3 cut(s)	169, 187, 312
FaiI	YATR	8 cut(s)	95, 167, 185, 252, 296, 303, 310, 317
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	3 cut(s)	165, 183, 308
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	201
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	201
GsaI	CCCAGC	1 cut(s)	270
GsuI	CTGGAG	1 cut(s)	300
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	160
HapII	CCGG	1 cut(s)	157
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	3 cut(s)	169, 187, 312
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HinfI	GANTC	1 cut(s)	83
HpaII	CCGG	1 cut(s)	157
HphI	GGTGA	2 cut(s)	92, 204
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	1 cut(s)	58
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	2 cut(s)	38, 219
HpyCH4III	ACNGT	1 cut(s)	111
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	3 cut(s)	139, 200, 312
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	3 cut(s)	169, 187, 312
HspAI	GCGC	1 cut(s)	125
Kzo9I	GATC	1 cut(s)	3
LguI	GCTCTTC	1 cut(s)	210
LpnPI	CCDG	7 cut(s)	8, 170, 210, 237, 264, 268, 280
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	2 cut(s)	187, 274
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	245, 304
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	2 cut(s)	197, 250
MluCI	AATT	2 cut(s)	289, 298
MnlI	CCTC	1 cut(s)	64
MspI	CCGG	1 cut(s)	157
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	3 cut(s)	169, 187, 312
NspI	RCATGY	1 cut(s)	312
PciSI	GCTCTTC	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	83
PflFI	GACNNNGTC	1 cut(s)	166
PkrI	GCNGC	1 cut(s)	202
Ppu21I	YACGTR	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	223
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	223
PsyI	GACNNNGTC	1 cut(s)	166
RsaI	GTAC	2 cut(s)	146, 277
RsaNI	GTAC	2 cut(s)	145, 276
SapI	GCTCTTC	1 cut(s)	210
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	1 cut(s)	3
ScaI	AGTACT	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	225
SetI	ASST	6 cut(s)	27, 49, 150, 205, 226, 328
SfaNI	GCATC	2 cut(s)	187, 274
SfcI	CTRYAG	1 cut(s)	315
SnaBI	TACGTA	1 cut(s)	148
Sse9I	AATT	2 cut(s)	289, 298
StyD4I	CCNGG	1 cut(s)	223
TaaI	ACNGT	1 cut(s)	111
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	3 cut(s)	6, 49, 66
TasI	AATT	2 cut(s)	289, 298
TatI	WGTACW	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	83
TscAI	CASTG	1 cut(s)	262
TseI	GCWGC	1 cut(s)	200
TspRI	CASTG	1 cut(s)	262
Tth111I	GACNNNGTC	1 cut(s)	166
XceI	RCATGY	1 cut(s)	312
XmiI	GTMKAC	1 cut(s)	150
ZrmI	AGTACT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.