Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000201

Physical Location & Seq

Genomic Coordinates Forward (+)

20056852 .. 20060836

Gene Structure 3985 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00398200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTTCTATTGGGATAATTCTTTGGACCCAAAAATTGCAGATTTTGGTATGGCTAGAATATTTAGAGCGGATCAAAGTGAAGCGAATACCAATCGTGTGGTTGGAACATATGGTTATATGTCTCCAGAATATGCAATGGAAGGACTGTTTTCAATAAAGTCTGATGTATATAGTTTTGGTGTTTTACTGCTGGAAATGATTATTGGCAAAAAGAATGCTGGTTATTACCATGAGGAGTATCCTAATTCAAATTTGGTTGGACATGTTTGGGAGTTATGGAAAGAAGGCAGAGCTGTGCAAGTCATTGATTCATCTATAGGTAAATCTTACCTTGTTGGTGAAGTTGTAAGGTGCATTCAAATCGCGCTCTTGTGTGTGCAAGAATTTGCAACTGACCGGCCAACCATGTCGGCAGTTGTTTCCATGTTAGGTAATGATGTAGCTCTTCCTTCACCAAGGCAACCAGCATTTTTACTAAAGAGAACGAGTCCTAGTGGAGACCCATCCCGCAGCGAAGGAGCTAATTCAGTAAATGATGTCACATGTACAATTATAGAAGCTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

188

Amino Acids

20.86

Weight (kDa)

5.07

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	7 - 74	7.3e-13	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	11 - 143	4.3e-14	Protein tyrosine and serine/threonine kinase
DUF3403	PF11883	145 - 188	5.3e-09	Domain of unknown function (DUF3403)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21366
fragaria_vesca	FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica	MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica	Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis	pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis	RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata	RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora	Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa	Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha	Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana	Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	68
AccII	CGCG	1 cut(s)	365
AciI	CCGC	2 cut(s)	68, 508
AclWI	GGATC	1 cut(s)	78
AcoI	YGGCCR	1 cut(s)	398
AcsI	RAATTY	2 cut(s)	250, 383
AfaI	GTAC	1 cut(s)	547
AflIII	ACRYGT	2 cut(s)	262, 542
AgsI	TTSAA	3 cut(s)	153, 249, 359
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	4 cut(s)	293, 443, 521, 560
AluI	AGCT	4 cut(s)	293, 443, 521, 560
Alw26I	GTCTC	2 cut(s)	126, 492
AlwI	GGATC	1 cut(s)	78
AoxI	GGCC	1 cut(s)	398
ApeKI	GCWGC	1 cut(s)	510
ApoI	RAATTY	2 cut(s)	250, 383
AspLEI	GCGC	1 cut(s)	367
AspS9I	GGNCC	1 cut(s)	25
AsuHPI	GGTGA	2 cut(s)	350, 444
AvaII	GGWCC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	522
BccI	CCATC	1 cut(s)	511
BcgI	CGANNNNNNTGC	2 cut(s)	343, 377
BciVI	GTATCC	1 cut(s)	249
BcoDI	GTCTC	2 cut(s)	126, 492
BfaI	CTAG	2 cut(s)	54, 492
BfmI	CTRYAG	1 cut(s)	315
BfuI	GTATCC	1 cut(s)	249
BisI	GCNGC	1 cut(s)	511
BlsI	GCNGC	1 cut(s)	512
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	492
BsaJI	CCNNGG	1 cut(s)	455
Bse118I	RCCGGY	1 cut(s)	396
Bse3DI	GCAATG	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	455
BseGI	GGATG	1 cut(s)	503
BseMI	GCAATG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	1 cut(s)	522
Bsh1236I	CGCG	1 cut(s)	365
BshFI	GGCC	1 cut(s)	400
BsiSI	CCGG	1 cut(s)	397
BsmAI	GTCTC	2 cut(s)	126, 492
BsmI	GAATGC	2 cut(s)	220, 354
BsnI	GGCC	1 cut(s)	400
Bso31I	GGTCTC	1 cut(s)	492
Bsp1407I	TGTACA	1 cut(s)	545
Bsp143I	GATC	1 cut(s)	70
BspACI	CCGC	2 cut(s)	68, 508
BspANI	GGCC	1 cut(s)	400
BspFNI	CGCG	1 cut(s)	365
BspLI	GGNNCC	1 cut(s)	27
BspPI	GGATC	1 cut(s)	78
BspQI	GCTCTTC	1 cut(s)	450
BspTNI	GGTCTC	1 cut(s)	492
BsrBI	CCGCTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	396
BsrGI	TGTACA	1 cut(s)	545
BssAI	RCCGGY	1 cut(s)	396
BssECI	CCNNGG	1 cut(s)	455
BssMI	GATC	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	455
Bst4CI	ACNGT	1 cut(s)	147
Bst6I	CTCTTC	1 cut(s)	450
BstAUI	TGTACA	1 cut(s)	545
BstC8I	GCNNGC	1 cut(s)	562
BstF5I	GGATG	1 cut(s)	503
BstFNI	CGCG	1 cut(s)	365
BstHHI	GCGC	1 cut(s)	367
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	2 cut(s)	126, 492
BstMBI	GATC	1 cut(s)	70
BstNSI	RCATGY	2 cut(s)	266, 546
BstSFI	CTRYAG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	365
BstV1I	GCAGC	1 cut(s)	522
BstXI	CCANNNNNNTGG	1 cut(s)	97
BsuI	GTATCC	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	400
BtsCI	GGATG	1 cut(s)	503
Cac8I	GCNNGC	1 cut(s)	562
CfoI	GCGC	1 cut(s)	367
Cfr10I	RCCGGY	1 cut(s)	396
Cfr13I	GGNCC	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	546
CviAII	CATG	5 cut(s)	230, 263, 406, 424, 543
CviJI	RGCY	6 cut(s)	53, 293, 400, 443, 521, 560
CviKI_1	RGCY	6 cut(s)	53, 293, 400, 443, 521, 560
CviQI	GTAC	1 cut(s)	546
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
EaeI	YGGCCR	1 cut(s)	398
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
Eco130I	CCWWGG	1 cut(s)	455
Eco31I	GGTCTC	1 cut(s)	492
Eco47I	GGWCC	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	455
ErhI	CCWWGG	1 cut(s)	455
FaeI	CATG	5 cut(s)	233, 266, 409, 427, 546
FatI	CATG	5 cut(s)	229, 262, 405, 423, 542
FauI	CCCGC	1 cut(s)	515
FauNDI	CATATG	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	511
FokI	GGATG	1 cut(s)	490
Fsp4HI	GCNGC	1 cut(s)	511
FspBI	CTAG	2 cut(s)	54, 492
GlaI	GCGC	1 cut(s)	366
GluI	GCNGC	1 cut(s)	511
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	400
HapII	CCGG	1 cut(s)	397
HhaI	GCGC	1 cut(s)	367
Hin1II	CATG	5 cut(s)	233, 266, 409, 427, 546
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HinfI	GANTC	2 cut(s)	308, 487
HpaII	CCGG	1 cut(s)	397
HphI	GGTGA	2 cut(s)	350, 444
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	1 cut(s)	125
HpyAV	CCTTC	4 cut(s)	134, 278, 459, 509
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4V	TGCA	6 cut(s)	38, 134, 298, 354, 379, 389
Hsp92II	CATG	5 cut(s)	233, 266, 409, 427, 546
HspAI	GCGC	1 cut(s)	365
Kzo9I	GATC	1 cut(s)	70
LguI	GCTCTTC	1 cut(s)	450
LmnI	GCTCC	1 cut(s)	518
LpnPI	CCDG	5 cut(s)	138, 176, 204, 410, 477
Lsp1109I	GCAGC	1 cut(s)	522
MaeI	CTAG	2 cut(s)	54, 492
MaeIII	GTNAC	1 cut(s)	538
MalI	GATC	1 cut(s)	72
MbiI	CCGCTC	1 cut(s)	68
MboI	GATC	1 cut(s)	70
MboII	GAAGA	1 cut(s)	437
MluCI	AATT	7 cut(s)	16, 33, 244, 250, 383, 523, 549
MlyI	GAGTC	1 cut(s)	496
MmeI	TCCRAC	2 cut(s)	82, 238
MnlI	CCTC	1 cut(s)	226
MspI	CCGG	1 cut(s)	397
Mva1269I	GAATGC	2 cut(s)	220, 354
MvnI	CGCG	1 cut(s)	365
NdeI	CATATG	1 cut(s)	109
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	5 cut(s)	233, 266, 409, 427, 546
NlaIV	GGNNCC	1 cut(s)	27
NmuCI	GTSAC	1 cut(s)	538
NspI	RCATGY	2 cut(s)	266, 546
PciI	ACATGT	2 cut(s)	262, 542
PciSI	GCTCTTC	1 cut(s)	450
PctI	GAATGC	2 cut(s)	220, 354
PfeI	GAWTC	1 cut(s)	308
PkrI	GCNGC	1 cut(s)	512
PleI	GAGTC	1 cut(s)	495
PpsI	GAGTC	1 cut(s)	495
PscI	ACATGT	2 cut(s)	262, 542
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	25
RsaI	GTAC	1 cut(s)	547
RsaNI	GTAC	1 cut(s)	546
SapI	GCTCTTC	1 cut(s)	450
SatI	GCNGC	1 cut(s)	511
Sau3AI	GATC	1 cut(s)	70
Sau96I	GGNCC	1 cut(s)	25
SchI	GAGTC	1 cut(s)	496
SetI	ASST	8 cut(s)	295, 322, 333, 353, 433, 445, 523, 562
SfcI	CTRYAG	1 cut(s)	315
SinI	GGWCC	1 cut(s)	25
Sse9I	AATT	7 cut(s)	16, 33, 244, 250, 383, 523, 549
SsiI	CCGC	2 cut(s)	68, 508
SspI	AATATT	1 cut(s)	60
SspMI	CTAG	2 cut(s)	54, 492
StyI	CCWWGG	1 cut(s)	455
TaaI	ACNGT	1 cut(s)	147
TasI	AATT	7 cut(s)	16, 33, 244, 250, 383, 523, 549
TatI	WGTACW	1 cut(s)	545
TfiI	GAWTC	1 cut(s)	308
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	1 cut(s)	510
Tsp45I	GTSAC	1 cut(s)	538
TspDTI	ATGAA	1 cut(s)	300
VpaK11BI	GGWCC	1 cut(s)	25
XapI	RAATTY	2 cut(s)	250, 383
XceI	RCATGY	2 cut(s)	266, 546
XspI	CTAG	2 cut(s)	54, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.