Rh5DG260000

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000201
Physical Location & Seq
Forward (+)
31069274 .. 31070262
989 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG260000.1

Sequence Viewer

Length: 688 bp
ATGATAATGATACAGCTCTCTGGGTTCTACTCCCCTGCTCATCTGCAACTTGTGATACACCCTTTAGCTCAATCCACTTCCAACCATGGCGGCTATGAATCGGGTTTCTTGTGTAGACCAAAGGGTGTTCATAGGAGGAGTCTTTTGGCCTCGACTTCTGGAGACTATTGTGACAATAATAACCTTTGTGGCCCGAATGGAATGTGTGTCATCACCAATTCACCGGTCTGTACTTGTTTAAATGGGTTTGAACCCAAGGCACCAGAAAAATATAACTCTGGGGACAACTCAGGTGGTTGTGTCCGGGCTCAACCTTCCAACTGCCAAAACAAGGATGATGGGTTTGAGCTATATGCTGGGGTCAAATTGCCAGATACCACAGATTCTCGGGCTAACCAGAGTATGAGTGTCGAGGACTGCAGGGAAAATTGCTTGAACAACTGCTCTTGTGTGGCTTATGCAAGCTCTAAAGTCAATGGCTGTACTATCTGGTTTGGTGATTTAATCAACATGAGGACTCTTTCTGGTGGTGGGGAGGATCTGTACATTCGGATACCTGCTTCAGAATTAAAGAAAAACCACTCACCTAAGACAAAGATAGCGGTGATCGTTGCATCTGTTGTTGCGGTTGTCATTGGGATGCTCTTGGTTGCTTATTGCGTTCACAGGAGGAGAACAAAGTTCAAAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

229

Amino Acids

24.81

Weight (kDa)

8.51

Isoelectric Point (pI)

49.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 50 - 86 9.9e-09 S-locus glycoprotein domain
PAN_2 PF08276 108 - 171 6.5e-19 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 565
AccB1I GGYRCC 1 cut(s) 259
AccI GTMKAC 1 cut(s) 115
AciI CCGC 3 cut(s) 90, 602, 626
AclWI GGATC 1 cut(s) 546
AcuI CTGAAG 1 cut(s) 546
AfaI GTAC 3 cut(s) 232, 484, 545
AfiI CCNNNNNNNGG 1 cut(s) 331
AgeI ACCGGT 1 cut(s) 223
AgsI TTSAA 3 cut(s) 251, 436, 685
AluBI AGCT 4 cut(s) 16, 68, 349, 465
AluI AGCT 4 cut(s) 16, 68, 349, 465
Alw26I GTCTC 1 cut(s) 156
AlwI GGATC 1 cut(s) 546
Ama87I CYCGRG 1 cut(s) 387
AoxI GGCC 2 cut(s) 147, 190
AsiGI ACCGGT 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 191
AsuC2I CCSGG 1 cut(s) 305
AsuHPI GGTGA 5 cut(s) 205, 213, 509, 576, 616
AvaI CYCGRG 1 cut(s) 387
BanI GGYRCC 1 cut(s) 259
BanII GRGCYC 1 cut(s) 310
BccI CCATC 1 cut(s) 332
BciVI GTATCC 1 cut(s) 546
BcnI CCSGG 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 156
BfmI CTRYAG 1 cut(s) 418
BfuAI ACCTGC 1 cut(s) 565
BfuI GTATCC 1 cut(s) 546
BisI GCNGC 1 cut(s) 91
BlsI GCNGC 1 cut(s) 92
Bme1390I CCNGG 1 cut(s) 305
BmeT110I CYCGRG 1 cut(s) 387
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 305
BmsI GCATC 2 cut(s) 623, 630
BpmI CTGGAG 1 cut(s) 180
BpuMI CCSGG 1 cut(s) 305
BsaJI CCNNGG 2 cut(s) 85, 255
BsaWI WCCGGW 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 527, 557
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse118I RCCGGY 1 cut(s) 223
BseDI CCNNGG 2 cut(s) 85, 255
BseGI GGATG 2 cut(s) 340, 645
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMII CTCAG 1 cut(s) 303
BseRI GAGGAG 2 cut(s) 151, 685
BseYI CCCAGC 1 cut(s) 356
BshFI GGCC 2 cut(s) 149, 192
BshNI GGYRCC 1 cut(s) 259
BshTI ACCGGT 1 cut(s) 223
BsiHKCI CYCGRG 1 cut(s) 387
BsiSI CCGG 2 cut(s) 224, 304
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 1 cut(s) 331
BsmAI GTCTC 1 cut(s) 156
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 2 cut(s) 149, 192
BsoBI CYCGRG 1 cut(s) 387
Bsp1286I GDGCHC 1 cut(s) 310
Bsp1407I TGTACA 1 cut(s) 543
Bsp143I GATC 2 cut(s) 538, 606
Bsp19I CCATGG 1 cut(s) 85
BspACI CCGC 3 cut(s) 90, 602, 626
BspANI GGCC 2 cut(s) 149, 192
BspCNI CTCAG 1 cut(s) 302
BspLI GGNNCC 1 cut(s) 261
BspMAI CTGCAG 1 cut(s) 422
BspMI ACCTGC 1 cut(s) 565
BspPI GGATC 1 cut(s) 546
BspT107I GGYRCC 1 cut(s) 259
BsrFI RCCGGY 1 cut(s) 223
BsrGI TGTACA 1 cut(s) 543
BssAI RCCGGY 1 cut(s) 223
BssECI CCNNGG 2 cut(s) 85, 255
BssMI GATC 2 cut(s) 538, 606
BssT1I CCWWGG 2 cut(s) 85, 255
BstAUI TGTACA 1 cut(s) 543
BstC8I GCNNGC 1 cut(s) 463
BstDEI CTNAG 2 cut(s) 289, 588
BstDSI CCRYGG 1 cut(s) 85
BstF5I GGATG 2 cut(s) 340, 645
BstKTI GATC 2 cut(s) 541, 609
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 2 cut(s) 538, 606
BstSCI CCNGG 1 cut(s) 303
BstSFI CTRYAG 1 cut(s) 418
BstX2I RGATCY 1 cut(s) 538
BstYI RGATCY 1 cut(s) 538
BsuI GTATCC 1 cut(s) 546
BsuRI GGCC 2 cut(s) 149, 192
BtgI CCRYGG 1 cut(s) 85
BtsCI GGATG 2 cut(s) 340, 645
BveI ACCTGC 1 cut(s) 565
Cac8I GCNNGC 1 cut(s) 463
Cfr10I RCCGGY 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 191
Csp6I GTAC 3 cut(s) 231, 483, 544
CspAI ACCGGT 1 cut(s) 223
CspCI CAANNNNNGTGG 2 cut(s) 274, 309
CviAII CATG 2 cut(s) 86, 511
CviQI GTAC 3 cut(s) 231, 483, 544
DdeI CTNAG 2 cut(s) 289, 588
DpnI GATC 2 cut(s) 540, 608
DpnII GATC 2 cut(s) 538, 606
DraI TTTAAA 1 cut(s) 240
Eco130I CCWWGG 2 cut(s) 85, 255
Eco24I GRGCYC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 546
Eco88I CYCGRG 1 cut(s) 387
EcoT14I CCWWGG 2 cut(s) 85, 255
EcoT38I GRGCYC 1 cut(s) 310
ErhI CCWWGG 2 cut(s) 85, 255
FaeI CATG 2 cut(s) 89, 514
FaiI YATR 9 cut(s) 87, 96, 132, 273, 352, 354, 404, 459, 512
FaqI GGGAC 1 cut(s) 296
FatI CATG 2 cut(s) 85, 510
FblI GTMKAC 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 91
FokI GGATG 2 cut(s) 347, 652
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 91
GsaI CCCAGC 1 cut(s) 360
GsuI CTGGAG 1 cut(s) 180
HaeIII GGCC 2 cut(s) 149, 192
HapII CCGG 2 cut(s) 224, 304
Hin1II CATG 2 cut(s) 89, 514
HinfI GANTC 4 cut(s) 98, 139, 383, 517
HpaII CCGG 2 cut(s) 224, 304
HphI GGTGA 5 cut(s) 205, 213, 509, 576, 616
Hpy166II GTNNAC 2 cut(s) 116, 664
Hpy188I TCNGA 2 cut(s) 552, 565
Hpy188III TCNNGA 1 cut(s) 159
Hpy8I GTNNAC 2 cut(s) 116, 664
HpyAV CCTTC 1 cut(s) 324
HpyCH4V TGCA 4 cut(s) 46, 420, 461, 614
HpyF3I CTNAG 2 cut(s) 289, 588
Hsp92II CATG 2 cut(s) 89, 514
Kzo9I GATC 2 cut(s) 538, 606
LweI GCATC 2 cut(s) 623, 630
MaeIII GTNAC 1 cut(s) 170
MalI GATC 2 cut(s) 540, 608
MboI GATC 2 cut(s) 538, 606
MflI RGATCY 1 cut(s) 538
MhlI GDGCHC 1 cut(s) 310
MluCI AATT 4 cut(s) 217, 365, 427, 566
MlyI GAGTC 2 cut(s) 148, 511
MmeI TCCRAC 2 cut(s) 105, 342
MnlI CCTC 6 cut(s) 129, 160, 406, 507, 529, 663
MseI TTAA 3 cut(s) 239, 503, 569
MslI CAYNNNNRTG 1 cut(s) 638
MspI CCGG 2 cut(s) 224, 304
MspR9I CCNGG 1 cut(s) 305
NciI CCSGG 1 cut(s) 305
NcoI CCATGG 1 cut(s) 85
NdeII GATC 2 cut(s) 538, 606
NlaIII CATG 2 cut(s) 89, 514
NlaIV GGNNCC 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 170
PfeI GAWTC 2 cut(s) 98, 383
PinAI ACCGGT 1 cut(s) 223
PkrI GCNGC 1 cut(s) 92
PleI GAGTC 2 cut(s) 147, 511
PpsI GAGTC 2 cut(s) 147, 511
PspFI CCCAGC 1 cut(s) 356
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 191
PstI CTGCAG 1 cut(s) 422
PsuI RGATCY 1 cut(s) 538
RsaI GTAC 3 cut(s) 232, 484, 545
RsaNI GTAC 3 cut(s) 231, 483, 544
RseI CAYNNNNRTG 1 cut(s) 638
SaqAI TTAA 3 cut(s) 239, 503, 569
SatI GCNGC 1 cut(s) 91
Sau3AI GATC 2 cut(s) 538, 606
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 2 cut(s) 148, 511
ScrFI CCNGG 1 cut(s) 305
SduI GDGCHC 1 cut(s) 310
SetI ASST 9 cut(s) 18, 70, 186, 295, 316, 351, 467, 559, 589
SfaNI GCATC 2 cut(s) 623, 630
SfcI CTRYAG 1 cut(s) 418
SmiMI CAYNNNNRTG 1 cut(s) 638
Sse9I AATT 4 cut(s) 217, 365, 427, 566
SsiI CCGC 3 cut(s) 90, 602, 626
StyD4I CCNGG 1 cut(s) 303
StyI CCWWGG 2 cut(s) 85, 255
TaqI TCGA 2 cut(s) 152, 411
TasI AATT 4 cut(s) 217, 365, 427, 566
TatI WGTACW 3 cut(s) 230, 482, 543
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 2 cut(s) 98, 383
Tru1I TTAA 3 cut(s) 239, 503, 569
Tru9I TTAA 3 cut(s) 239, 503, 569
TseFI GTSAC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 2 cut(s) 111, 119
XmiI GTMKAC 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.