RLG00000033715

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000201
Physical Location & Seq
Forward (+)
31317613 .. 31319442
1830 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033715

Sequence Viewer

Length: 483 bp
ATGGCCTTTGTGGCCCCTATTCAATCTGTATCATCAGTAGTTCACAGAGGATTGATCAGGGGTTATCAATCCTCACTTGAAATAACATATTCAGGTGGTTGTGACCGCACTGAAGCTTTGAATTGCCAAAATAAAGATGATGGGTTTGTGGAATATGCTGGGATAAAGTTGCCAGATGCTACAGATTCTCGGGTTAACCAGAGTATGAGTCTGATGGAATGCAGGGAAAATTGCTTGAACAACTGTTCTTGTGTGGCTTATGCAAGCTCTAATGTCAATGGCTGCACTATCTGGTTTGGTGATTTAATCAACATTAGGAAGCTTTTGGGTGGTGGGGAGGATCTGTACATTCGAATACCTGCTTTAGAATTAATTGCCATGGGGCTCTTGGTTGCTTATTGCATTCATAGGAGGAGAATGAAGTTAAAAGGAAATACTTCTTCTAGTGATGCTCTTGAAGCATGTGGCCATACCAACTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

161

Amino Acids

17.51

Weight (kDa)

6.27

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 42 - 105 2.9e-20 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 367
AciI CCGC 1 cut(s) 106
AclWI GGATC 1 cut(s) 348
AcoI YGGCCR 1 cut(s) 466
AcuI CTGAAG 1 cut(s) 132
AfaI GTAC 1 cut(s) 347
AgsI TTSAA 5 cut(s) 23, 80, 121, 238, 458
AluBI AGCT 3 cut(s) 116, 267, 322
AluI AGCT 3 cut(s) 116, 267, 322
AlwI GGATC 1 cut(s) 348
Ama87I CYCGRG 1 cut(s) 189
AoxI GGCC 3 cut(s) 3, 12, 466
ApeKI GCWGC 1 cut(s) 282
AseI ATTAAT 1 cut(s) 371
Asp700I GAANNNNTTC 1 cut(s) 436
AspS9I GGNCC 1 cut(s) 13
AsuHPI GGTGA 1 cut(s) 311
AsuII TTCGAA 1 cut(s) 352
AvaI CYCGRG 1 cut(s) 189
BalI TGGCCA 1 cut(s) 468
BanII GRGCYC 1 cut(s) 387
BbvI GCAGC 1 cut(s) 269
BccI CCATC 2 cut(s) 134, 208
BclI TGATCA 1 cut(s) 54
BfaI CTAG 1 cut(s) 444
BfmI CTRYAG 1 cut(s) 180
BfuAI ACCTGC 1 cut(s) 367
BglI GCCNNNNNGGC 1 cut(s) 11
BisI GCNGC 1 cut(s) 283
BlsI GCNGC 1 cut(s) 284
BmeT110I CYCGRG 1 cut(s) 189
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 15
BmsI GCATC 2 cut(s) 166, 439
Bpu14I TTCGAA 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 378
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
BseDI CCNNGG 1 cut(s) 378
BseRI GAGGAG 1 cut(s) 427
BseXI GCAGC 1 cut(s) 269
BseYI CCCAGC 1 cut(s) 158
BsgI GTGCAG 1 cut(s) 268
BshFI GGCC 3 cut(s) 5, 14, 468
BsiHKCI CYCGRG 1 cut(s) 189
BsmI GAATGC 2 cut(s) 224, 402
BsnI GGCC 3 cut(s) 5, 14, 468
BsoBI CYCGRG 1 cut(s) 189
Bsp119I TTCGAA 1 cut(s) 352
Bsp1286I GDGCHC 1 cut(s) 387
Bsp1407I TGTACA 1 cut(s) 345
Bsp143I GATC 2 cut(s) 54, 340
Bsp19I CCATGG 1 cut(s) 378
BspACI CCGC 1 cut(s) 106
BspANI GGCC 3 cut(s) 5, 14, 468
BspLI GGNNCC 1 cut(s) 15
BspMI ACCTGC 1 cut(s) 367
BspPI GGATC 1 cut(s) 348
BspT104I TTCGAA 1 cut(s) 352
BsrGI TGTACA 1 cut(s) 345
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 2 cut(s) 54, 340
BssT1I CCWWGG 1 cut(s) 378
Bst4CI ACNGT 1 cut(s) 245
BstAUI TGTACA 1 cut(s) 345
BstBI TTCGAA 1 cut(s) 352
BstC8I GCNNGC 1 cut(s) 265
BstDSI CCRYGG 1 cut(s) 378
BstKTI GATC 2 cut(s) 57, 343
BstMBI GATC 2 cut(s) 54, 340
BstMWI GCNNNNNNNGC 2 cut(s) 11, 458
BstNSI RCATGY 1 cut(s) 465
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 269
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BsuRI GGCC 3 cut(s) 5, 14, 468
BtgI CCRYGG 1 cut(s) 378
BtsIMutI CAGTG 1 cut(s) 108
BveI ACCTGC 1 cut(s) 367
Cac8I GCNNGC 1 cut(s) 265
Cfr13I GGNCC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 346
CviAII CATG 2 cut(s) 379, 462
CviJI RGCY 9 cut(s) 5, 14, 116, 257, 267, 282, 322, 385, 468
CviKI_1 RGCY 9 cut(s) 5, 14, 116, 257, 267, 282, 322, 385, 468
CviQI GTAC 1 cut(s) 346
DpnI GATC 2 cut(s) 56, 342
DpnII GATC 2 cut(s) 54, 340
EaeI YGGCCR 1 cut(s) 466
Eco130I CCWWGG 1 cut(s) 378
Eco24I GRGCYC 1 cut(s) 387
Eco57I CTGAAG 1 cut(s) 132
Eco88I CYCGRG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 378
EcoT38I GRGCYC 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 2 cut(s) 382, 465
FaiI YATR 8 cut(s) 88, 156, 206, 261, 380, 408, 463, 471
FatI CATG 2 cut(s) 378, 461
FbaI TGATCA 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 283
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 1 cut(s) 283
FspBI CTAG 1 cut(s) 444
GluI GCNGC 1 cut(s) 283
GsaI CCCAGC 1 cut(s) 162
HaeIII GGCC 3 cut(s) 5, 14, 468
Hin1II CATG 2 cut(s) 382, 465
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HindIII AAGCTT 2 cut(s) 114, 320
HinfI GANTC 2 cut(s) 185, 208
HpaI GTTAAC 1 cut(s) 196
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 2 cut(s) 43, 196
Hpy188I TCNGA 1 cut(s) 213
Hpy188III TCNNGA 1 cut(s) 455
Hpy8I GTNNAC 2 cut(s) 43, 196
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4V TGCA 4 cut(s) 222, 263, 285, 402
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 458
Hsp92II CATG 2 cut(s) 382, 465
Ksp22I TGATCA 1 cut(s) 54
KspAI GTTAAC 1 cut(s) 196
Kzo9I GATC 2 cut(s) 54, 340
LpnPI CCDG 8 cut(s) 43, 78, 144, 186, 208, 212, 277, 372
Lsp1109I GCAGC 1 cut(s) 269
LweI GCATC 2 cut(s) 166, 439
MaeI CTAG 1 cut(s) 444
MaeIII GTNAC 1 cut(s) 101
MalI GATC 2 cut(s) 56, 342
MboI GATC 2 cut(s) 54, 340
MboII GAAGA 1 cut(s) 432
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 1 cut(s) 387
MlsI TGGCCA 1 cut(s) 468
MluCI AATT 4 cut(s) 121, 229, 368, 372
MluNI TGGCCA 1 cut(s) 468
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 4 cut(s) 41, 82, 331, 405
Mox20I TGGCCA 1 cut(s) 468
MroXI GAANNNNTTC 1 cut(s) 436
MscI TGGCCA 1 cut(s) 468
MseI TTAA 4 cut(s) 195, 305, 371, 425
Msp20I TGGCCA 1 cut(s) 468
Mva1269I GAATGC 2 cut(s) 224, 402
MwoI GCNNNNNNNGC 2 cut(s) 11, 458
NcoI CCATGG 1 cut(s) 378
NdeII GATC 2 cut(s) 54, 340
NlaIII CATG 2 cut(s) 382, 465
NlaIV GGNNCC 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 101
NspI RCATGY 1 cut(s) 465
NspV TTCGAA 1 cut(s) 352
PctI GAATGC 2 cut(s) 224, 402
PdmI GAANNNNTTC 1 cut(s) 436
PfeI GAWTC 1 cut(s) 185
PkrI GCNGC 1 cut(s) 284
PleI GAGTC 1 cut(s) 216
PpsI GAGTC 1 cut(s) 216
PshBI ATTAAT 1 cut(s) 371
PspFI CCCAGC 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 1 cut(s) 13
PsuI RGATCY 1 cut(s) 340
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
SaqAI TTAA 4 cut(s) 195, 305, 371, 425
SatI GCNGC 1 cut(s) 283
Sau3AI GATC 2 cut(s) 54, 340
Sau96I GGNCC 1 cut(s) 13
SchI GAGTC 1 cut(s) 217
SduI GDGCHC 1 cut(s) 387
SetI ASST 5 cut(s) 97, 118, 269, 324, 361
SfaNI GCATC 2 cut(s) 166, 439
SfcI CTRYAG 1 cut(s) 180
SfiI GGCCNNNNNGGCC 1 cut(s) 11
SfuI TTCGAA 1 cut(s) 352
Sse9I AATT 4 cut(s) 121, 229, 368, 372
SsiI CCGC 1 cut(s) 106
SspMI CTAG 1 cut(s) 444
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 1 cut(s) 245
TaqI TCGA 1 cut(s) 352
TasI AATT 4 cut(s) 121, 229, 368, 372
TatI WGTACW 1 cut(s) 345
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 4 cut(s) 195, 305, 371, 425
Tru9I TTAA 4 cut(s) 195, 305, 371, 425
TscAI CASTG 1 cut(s) 115
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 1 cut(s) 282
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 2 cut(s) 395, 434
TspRI CASTG 1 cut(s) 115
VspI ATTAAT 1 cut(s) 371
XceI RCATGY 1 cut(s) 465
XcmI CCANNNNNNNNNTGG 1 cut(s) 385
XmnI GAANNNNTTC 1 cut(s) 436
XspI CTAG 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.