pycom05g20180

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000201
Physical Location & Seq
Reverse (-)
23034895 .. 23035320
426 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g20180.2

Sequence Viewer

Length: 252 bp
ATGACTTTTTGCGGTCGATCCATGTGCCTTTTATGCATGCTGCGAAATCCGGCTGTAGTTCTGATGTTGAGTGGTGAAAGTGCATTGTCTCAACCTCAAAAACCTGGTTTTTACAGTGAAAGGGATCTAGAGGACCTCAAAGTCGATCCTTGTGCAAACAAGGCTAGAGCATTTTCAGCTAATGAAGTCACTTTTGCAGTACTCGAGTTTGAAGATTGGATTGAACATTTTGTTTTGGTACAACTTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

84

Amino Acids

9.35

Weight (kDa)

4.75

Isoelectric Point (pI)

48.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 140
AciI CCGC 1 cut(s) 12
AclWI GGATC 3 cut(s) 12, 132, 140
AfaI GTAC 2 cut(s) 201, 240
AgsI TTSAA 2 cut(s) 212, 224
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 2 cut(s) 179, 249
AluI AGCT 2 cut(s) 179, 249
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 3 cut(s) 12, 132, 140
Ama87I CYCGRG 1 cut(s) 203
ApeKI GCWGC 1 cut(s) 40
AspS9I GGNCC 1 cut(s) 133
AsuHPI GGTGA 1 cut(s) 86
AvaI CYCGRG 1 cut(s) 203
AvaII GGWCC 1 cut(s) 133
BbvI GCAGC 1 cut(s) 27
BcgI CGANNNNNNTGC 4 cut(s) 6, 40, 134, 168
BciT130I CCWGG 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 2 cut(s) 128, 165
BfmI CTRYAG 1 cut(s) 54
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
BmcAI AGTACT 1 cut(s) 201
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 1 cut(s) 133
BmeT110I CYCGRG 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 27
Bsh1285I CGRYCG 1 cut(s) 16
BsiEI CGRYCG 1 cut(s) 16
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 93
BsoBI CYCGRG 1 cut(s) 203
Bsp143I GATC 3 cut(s) 17, 124, 145
BspACI CCGC 1 cut(s) 12
BspPI GGATC 3 cut(s) 12, 132, 140
BssMI GATC 3 cut(s) 17, 124, 145
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 245
BstKTI GATC 3 cut(s) 20, 127, 148
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 3 cut(s) 17, 124, 145
BstMCI CGRYCG 1 cut(s) 16
BstMWI GCNNNNNNNGC 3 cut(s) 33, 161, 176
BstNI CCWGG 1 cut(s) 105
BstNSI RCATGY 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 54
BstV1I GCAGC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BtsIMutI CAGTG 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 38
Cfr13I GGNCC 1 cut(s) 133
CsiI ACCWGGT 1 cut(s) 103
Csp6I GTAC 2 cut(s) 200, 239
CviAII CATG 2 cut(s) 22, 37
CviJI RGCY 4 cut(s) 53, 164, 179, 249
CviKI_1 RGCY 4 cut(s) 53, 164, 179, 249
CviQI GTAC 2 cut(s) 200, 239
DdeI CTNAG 1 cut(s) 245
DpnI GATC 3 cut(s) 19, 126, 147
DpnII GATC 3 cut(s) 17, 124, 145
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 133
Eco88I CYCGRG 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 103
EcoT22I ATGCAT 1 cut(s) 38
FaeI CATG 2 cut(s) 25, 40
FaiI YATR 3 cut(s) 23, 34, 38
FatI CATG 2 cut(s) 21, 36
Fnu4HI GCNGC 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 41
FspBI CTAG 2 cut(s) 128, 165
GluI GCNGC 1 cut(s) 41
HapII CCGG 1 cut(s) 50
Hin1II CATG 2 cut(s) 25, 40
HpaII CCGG 1 cut(s) 50
HphI GGTGA 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 1 cut(s) 128
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4V TGCA 4 cut(s) 36, 83, 155, 197
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 161, 176
HpyF3I CTNAG 1 cut(s) 245
Hsp92II CATG 2 cut(s) 25, 40
Kzo9I GATC 3 cut(s) 17, 124, 145
LpnPI CCDG 3 cut(s) 63, 90, 117
Lsp1109I GCAGC 1 cut(s) 27
MabI ACCWGGT 1 cut(s) 103
MaeI CTAG 2 cut(s) 128, 165
MaeIII GTNAC 1 cut(s) 187
MalI GATC 3 cut(s) 19, 126, 147
MboI GATC 3 cut(s) 17, 124, 145
MboII GAAGA 1 cut(s) 224
MflI RGATCY 1 cut(s) 124
MnlI CCTC 3 cut(s) 105, 124, 146
Mph1103I ATGCAT 1 cut(s) 38
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
MwoI GCNNNNNNNGC 3 cut(s) 33, 161, 176
NdeII GATC 3 cut(s) 17, 124, 145
NlaIII CATG 2 cut(s) 25, 40
NmuCI GTSAC 1 cut(s) 187
NsiI ATGCAT 1 cut(s) 38
NspI RCATGY 1 cut(s) 40
PaeI GCATGC 1 cut(s) 40
PaeR7I CTCGAG 1 cut(s) 203
PkrI GCNGC 1 cut(s) 42
PpuMI RGGWCCY 1 cut(s) 133
Psp5II RGGWCCY 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspPI GGNCC 1 cut(s) 133
PspPPI RGGWCCY 1 cut(s) 133
PspXI VCTCGAGB 1 cut(s) 203
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 2 cut(s) 201, 240
RsaNI GTAC 2 cut(s) 200, 239
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 3 cut(s) 17, 124, 145
Sau96I GGNCC 1 cut(s) 133
ScaI AGTACT 1 cut(s) 201
ScrFI CCNGG 1 cut(s) 105
SetI ASST 5 cut(s) 97, 106, 138, 181, 251
SexAI ACCWGGT 1 cut(s) 103
SfcI CTRYAG 1 cut(s) 54
Sfr274I CTCGAG 1 cut(s) 203
SinI GGWCC 1 cut(s) 133
SlaI CTCGAG 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SphI GCATGC 1 cut(s) 40
SsiI CCGC 1 cut(s) 12
SspMI CTAG 2 cut(s) 128, 165
StyD4I CCNGG 1 cut(s) 103
TaaI ACNGT 1 cut(s) 116
TaqI TCGA 3 cut(s) 16, 144, 204
TatI WGTACW 1 cut(s) 199
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 198
TspRI CASTG 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 133
XbaI TCTAGA 1 cut(s) 127
XceI RCATGY 1 cut(s) 40
XhoI CTCGAG 1 cut(s) 203
XspI CTAG 2 cut(s) 128, 165
ZrmI AGTACT 1 cut(s) 201
Zsp2I ATGCAT 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.