Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000201

Physical Location & Seq

Genomic Coordinates Forward (+)

74070758 .. 74071184

Gene Structure 427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00053250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGCCACAATCTCAACCTTTTTGGACATGTGAGCCGTTCATAGAGGGCGCGTCCATTGAACTTCTAGATCCATTGGTAGAGGACTCCAGCACTCTACATGAAGTTGTGCGATCGATTCGTGTAGGTCTTTTATGTGTGCAACAAAAACCACAAGATAGGCCAAGTATGCCAGCTACTGTTCTAATATTGAGTGGTGAGGGTGCATCGCCTCAACCTCAGAAGCCTGGTTTTTTCAGTGAAAGGAATCTGACAGAACCTGAAAATTCTACAGATGAGGCTACAGAATGTTCAGCTAATGAACTCACTGTTACATATGTGGGGGCTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

109

Amino Acids

11.93

Weight (kDa)

4.36

Isoelectric Point (pI)

76.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3403	PF11883	70 - 109	1.3e-07	Domain of unknown function (DUF3403)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21366
fragaria_vesca	FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica	MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica	Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis	pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis	RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata	RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora	Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa	Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha	Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana	Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	50
AclWI	GGATC	1 cut(s)	62
AcsI	RAATTY	1 cut(s)	262
AflIII	ACRYGT	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	2 cut(s)	173, 293
AluI	AGCT	2 cut(s)	173, 293
AlwI	GGATC	1 cut(s)	62
AlwNI	CAGNNNCTG	2 cut(s)	176, 257
AoxI	GGCC	1 cut(s)	158
ApoI	RAATTY	1 cut(s)	262
AspLEI	GCGC	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	325
BceAI	ACGGC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	225
BfaI	CTAG	1 cut(s)	65
BfmI	CTRYAG	2 cut(s)	267, 279
Bme1390I	CCNGG	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	225
BmsI	GCATC	1 cut(s)	212
BpmI	CTGGAG	1 cut(s)	70
Bsa29I	ATCGAT	1 cut(s)	113
BseBI	CCWGG	1 cut(s)	225
BseCI	ATCGAT	1 cut(s)	113
BseMII	CTCAG	1 cut(s)	230
Bsh1236I	CGCG	1 cut(s)	50
Bsh1285I	CGRYCG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	160
BshVI	ATCGAT	1 cut(s)	113
BsiEI	CGRYCG	1 cut(s)	113
BsnI	GGCC	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	2 cut(s)	67, 110
BspANI	GGCC	1 cut(s)	160
BspCNI	CTCAG	1 cut(s)	229
BspDI	ATCGAT	1 cut(s)	113
BspFNI	CGCG	1 cut(s)	50
BspPI	GGATC	1 cut(s)	62
BssMI	GATC	2 cut(s)	67, 110
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	178, 307
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	216
BstFNI	CGCG	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	2 cut(s)	70, 113
BstMBI	GATC	2 cut(s)	67, 110
BstMCI	CGRYCG	1 cut(s)	113
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	223
BstSFI	CTRYAG	2 cut(s)	267, 279
BstUI	CGCG	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
Bsu15I	ATCGAT	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	160
BsuTUI	ATCGAT	1 cut(s)	113
BtgZI	GCGATG	1 cut(s)	189
BtsIMutI	CAGTG	2 cut(s)	241, 303
Cac8I	GCNNGC	1 cut(s)	171
CaiI	CAGNNNCTG	2 cut(s)	176, 257
CfoI	GCGC	1 cut(s)	50
ClaI	ATCGAT	1 cut(s)	113
CseI	GACGC	1 cut(s)	39
CviAII	CATG	2 cut(s)	27, 98
CviJI	RGCY	7 cut(s)	34, 160, 173, 223, 278, 293, 323
CviKI_1	RGCY	7 cut(s)	34, 160, 173, 223, 278, 293, 323
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	2 cut(s)	69, 112
DpnII	GATC	2 cut(s)	67, 110
Eco24I	GRGCYC	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	325
FaeI	CATG	2 cut(s)	30, 101
FaiI	YATR	7 cut(s)	28, 41, 99, 133, 167, 313, 315
FatI	CATG	2 cut(s)	26, 97
FauNDI	CATATG	1 cut(s)	313
FriOI	GRGCYC	1 cut(s)	325
FspBI	CTAG	1 cut(s)	65
GlaI	GCGC	1 cut(s)	49
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	1 cut(s)	160
HgaI	GACGC	1 cut(s)	39
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	2 cut(s)	30, 101
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HinfI	GANTC	3 cut(s)	83, 115, 244
HphI	GGTGA	1 cut(s)	206
Hpy188I	TCNGA	2 cut(s)	219, 249
Hpy188III	TCNNGA	1 cut(s)	65
HpyCH4III	ACNGT	2 cut(s)	178, 307
HpyCH4V	TGCA	2 cut(s)	139, 203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HpyF3I	CTNAG	1 cut(s)	216
Hsp92II	CATG	2 cut(s)	30, 101
HspAI	GCGC	1 cut(s)	48
Kzo9I	GATC	2 cut(s)	67, 110
LpnPI	CCDG	5 cut(s)	100, 183, 210, 237, 270
LweI	GCATC	1 cut(s)	212
MaeI	CTAG	1 cut(s)	65
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	2 cut(s)	69, 112
MboI	GATC	2 cut(s)	67, 110
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	1 cut(s)	262
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	6 cut(s)	37, 73, 190, 219, 225, 268
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	166
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	2 cut(s)	67, 110
NlaIII	CATG	2 cut(s)	30, 101
NspI	RCATGY	1 cut(s)	30
PciI	ACATGT	1 cut(s)	26
PfeI	GAWTC	2 cut(s)	115, 244
Ple19I	CGATCG	1 cut(s)	113
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PscI	ACATGT	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PstNI	CAGNNNCTG	2 cut(s)	176, 257
PsuI	RGATCY	1 cut(s)	67
PvuI	CGATCG	1 cut(s)	113
Sau3AI	GATC	2 cut(s)	67, 110
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	6 cut(s)	19, 127, 175, 217, 259, 295
SfaNI	GCATC	1 cut(s)	212
SfcI	CTRYAG	2 cut(s)	267, 279
Sse9I	AATT	1 cut(s)	262
SspI	AATATT	1 cut(s)	186
SspMI	CTAG	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	223
TaaI	ACNGT	2 cut(s)	178, 307
TaqI	TCGA	2 cut(s)	113, 325
TasI	AATT	1 cut(s)	262
TfiI	GAWTC	2 cut(s)	115, 244
TscAI	CASTG	2 cut(s)	241, 310
TspDTI	ATGAA	3 cut(s)	28, 114, 312
TspRI	CASTG	2 cut(s)	241, 310
XapI	RAATTY	1 cut(s)	262
XbaI	TCTAGA	1 cut(s)	64
XceI	RCATGY	1 cut(s)	30
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.