Rh5CG281100

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000201
Physical Location & Seq
Forward (+)
30645041 .. 30646408
1368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG281100.1

Sequence Viewer

Length: 312 bp
ATGGCTTGGCTACTGTGGAACAAAGATAAGGGTTTGGAACTACTAGATCCTTGCTTGGAGGACTCATACATTGAGTTCGAAGTGCTAAGATGCATTCAAGTGGGTCTTTTGTGCGTTCAAAAGCTGCCGAAAGACAGACCAGAAATGTCATCAGTGCTTCCTATGTTGAGCAATGAGGGTGTAGCATTGCCTCAACCAAAGGAGCCTGGTTTCTTCACAGAAAGAAGTTCTGTAGACATTGATACCATCATAGGTGAAGGAAGAAGTCACACAGGAACCACTTTTACTATTACGATGGTAGAAGCTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

103

Amino Acids

11.58

Weight (kDa)

4.66

Isoelectric Point (pI)

51.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3403 PF11883 58 - 103 1.7e-09 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 234
AclWI GGATC 1 cut(s) 41
AgsI TTSAA 2 cut(s) 98, 119
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 2 cut(s) 124, 305
AluI AGCT 2 cut(s) 124, 305
AlwI GGATC 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 124
AsuHPI GGTGA 1 cut(s) 266
AsuII TTCGAA 1 cut(s) 78
BbvI GCAGC 1 cut(s) 111
BccI CCATC 2 cut(s) 254, 289
BciT130I CCWGG 1 cut(s) 207
BfaI CTAG 2 cut(s) 44, 306
BfmI CTRYAG 1 cut(s) 231
BisI GCNGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 126
Bme1390I CCNGG 1 cut(s) 207
BmiI GGNNCC 2 cut(s) 204, 277
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 80
Bpu14I TTCGAA 1 cut(s) 78
Bse3DI GCAATG 2 cut(s) 178, 185
BseBI CCWGG 1 cut(s) 207
BseMI GCAATG 2 cut(s) 178, 185
BseXI GCAGC 1 cut(s) 111
BsmI GAATGC 1 cut(s) 93
Bsp119I TTCGAA 1 cut(s) 78
Bsp143I GATC 1 cut(s) 46
BspLI GGNNCC 2 cut(s) 204, 277
BspPI GGATC 1 cut(s) 41
BspT104I TTCGAA 1 cut(s) 78
BsrDI GCAATG 2 cut(s) 178, 185
BssMI GATC 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 15
BstBI TTCGAA 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 86
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BtsIMutI CAGTG 1 cut(s) 159
CviJI RGCY 5 cut(s) 5, 10, 124, 205, 305
CviKI_1 RGCY 5 cut(s) 5, 10, 124, 205, 305
DdeI CTNAG 1 cut(s) 86
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 205
EcoT22I ATGCAT 1 cut(s) 95
FaiI YATR 3 cut(s) 67, 164, 251
FalI AAGNNNNNCTT 2 cut(s) 90, 122
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 125
FspBI CTAG 2 cut(s) 44, 306
GluI GCNGC 1 cut(s) 125
HinfI GANTC 1 cut(s) 62
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 1 cut(s) 235
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 1 cut(s) 251
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4V TGCA 1 cut(s) 93
HpyF3I CTNAG 1 cut(s) 86
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 4 cut(s) 153, 192, 219, 258
Lsp1109I GCAGC 1 cut(s) 111
LweI GCATC 1 cut(s) 80
MaeI CTAG 2 cut(s) 44, 306
MaeIII GTNAC 1 cut(s) 266
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 2 cut(s) 205, 273
MflI RGATCY 1 cut(s) 46
MlyI GAGTC 1 cut(s) 56
MnlI CCTC 3 cut(s) 52, 169, 201
Mph1103I ATGCAT 1 cut(s) 95
MslI CAYNNNNRTG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 207
Mva1269I GAATGC 1 cut(s) 93
MvaI CCWGG 1 cut(s) 207
NdeII GATC 1 cut(s) 46
NlaIV GGNNCC 2 cut(s) 204, 277
NmuCI GTSAC 1 cut(s) 266
NsiI ATGCAT 1 cut(s) 95
NspV TTCGAA 1 cut(s) 78
PctI GAATGC 1 cut(s) 93
PkrI GCNGC 1 cut(s) 126
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 2 cut(s) 204, 277
PsrI GAACNNNNNNTAC 2 cut(s) 268, 300
PsuI RGATCY 1 cut(s) 46
RseI CAYNNNNRTG 1 cut(s) 98
SatI GCNGC 1 cut(s) 125
Sau3AI GATC 1 cut(s) 46
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 1 cut(s) 207
SetI ASST 3 cut(s) 126, 256, 307
SfaNI GCATC 1 cut(s) 80
SfcI CTRYAG 1 cut(s) 231
SfuI TTCGAA 1 cut(s) 78
SgeI CNNG 9 cut(s) 18, 56, 63, 67, 110, 152, 218, 219, 285
SmiMI CAYNNNNRTG 1 cut(s) 98
SspMI CTAG 2 cut(s) 44, 306
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 1 cut(s) 15
TaqI TCGA 1 cut(s) 78
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 266
TspRI CASTG 1 cut(s) 159
XmiI GTMKAC 1 cut(s) 234
XspI CTAG 2 cut(s) 44, 306
Zsp2I ATGCAT 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.