Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000201

Physical Location & Seq

Genomic Coordinates Reverse (-)

19879413 .. 19879869

Gene Structure 457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG198600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCCACAATCTCAACCCTTTTCGACATGTAAGCCGTTCATAGAAGGCAGGTCCCTTGAACTTCTAGATCTATCGGTAGAGGACTCCAGCACTCTACATGAAGTTGTGCGATCGATTCATGCAGGTCTTTATGCATGTGTGCAACAAAAACCAGAAGATAGGTCAAGTATGCCGGCTGCTGTTCTAATATTGAGTGGTGAAGGTGCATTGCCTCAACCTCAGAAGCCTGGTTTTTTCAGTGAAAGGAATCTGACAGAACTTGAAGATTCTACAGATTTCTACAGAATGTTCAGCTCGATGAATGTTGATATCATGTTGAGTATTCTCTGCCCTTTATCCCCTTGCTTTCCTCTGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

119

Amino Acids

13.21

Weight (kDa)

4.61

Isoelectric Point (pI)

83.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21366
fragaria_vesca	FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica	MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica	Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis	pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis	RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata	RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora	Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa	Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha	Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana	Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	39, 113
AflIII	ACRYGT	1 cut(s)	26
AgsI	TTSAA	2 cut(s)	59, 263
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	1 cut(s)	294
AluI	AGCT	1 cut(s)	294
ApeKI	GCWGC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	51
AsuHPI	GGTGA	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	163
BceAI	ACGGC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	228
BfaI	CTAG	1 cut(s)	65
BfmI	CTRYAG	2 cut(s)	270, 280
BfuAI	ACCTGC	2 cut(s)	39, 113
BglII	AGATCT	1 cut(s)	67
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	51
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	70
Bsa29I	ATCGAT	1 cut(s)	113
Bse118I	RCCGGY	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	228
BseCI	ATCGAT	1 cut(s)	113
BseMI	GCAATG	1 cut(s)	206
BseMII	CTCAG	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	163
Bsh1285I	CGRYCG	1 cut(s)	113
BshVI	ATCGAT	1 cut(s)	113
BsiEI	CGRYCG	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	173
BslFI	GGGAC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	37
Bsp143I	GATC	2 cut(s)	67, 110
BspCNI	CTCAG	1 cut(s)	232
BspDI	ATCGAT	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	53
BspMI	ACCTGC	2 cut(s)	39, 113
BsrDI	GCAATG	1 cut(s)	206
BsrFI	RCCGGY	1 cut(s)	172
BssAI	RCCGGY	1 cut(s)	172
BssMI	GATC	2 cut(s)	67, 110
Bst2UI	CCWGG	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	219
BstKTI	GATC	2 cut(s)	70, 113
BstMBI	GATC	2 cut(s)	67, 110
BstMCI	CGRYCG	1 cut(s)	113
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	2 cut(s)	30, 138
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	2 cut(s)	270, 280
BstV1I	GCAGC	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
Bsu15I	ATCGAT	1 cut(s)	113
BsuTUI	ATCGAT	1 cut(s)	113
BtsIMutI	CAGTG	1 cut(s)	244
BveI	ACCTGC	2 cut(s)	39, 113
Cac8I	GCNNGC	1 cut(s)	174
Cfr10I	RCCGGY	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	51
ClaI	ATCGAT	1 cut(s)	113
CviAII	CATG	5 cut(s)	27, 98, 119, 135, 313
CviJI	RGCY	4 cut(s)	34, 176, 226, 294
CviKI_1	RGCY	4 cut(s)	34, 176, 226, 294
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	2 cut(s)	69, 112
DpnII	GATC	2 cut(s)	67, 110
Eco32I	GATATC	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	51
EcoO109I	RGGNCCY	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	226
EcoRV	GATATC	1 cut(s)	310
EcoT22I	ATGCAT	1 cut(s)	136
FaeI	CATG	5 cut(s)	30, 101, 122, 138, 316
FaiI	YATR	9 cut(s)	28, 41, 99, 120, 132, 136, 170, 314, 358
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	5 cut(s)	26, 97, 118, 134, 312
Fnu4HI	GCNGC	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	1 cut(s)	177
GsuI	CTGGAG	1 cut(s)	70
HapII	CCGG	1 cut(s)	173
Hin1II	CATG	5 cut(s)	30, 101, 122, 138, 316
HinfI	GANTC	4 cut(s)	83, 115, 247, 266
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	1 cut(s)	209
Hpy188I	TCNGA	3 cut(s)	222, 252, 354
Hpy188III	TCNNGA	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	38, 194
HpyCH4V	TGCA	4 cut(s)	122, 134, 142, 206
HpyF3I	CTNAG	1 cut(s)	219
Hsp92II	CATG	5 cut(s)	30, 101, 122, 138, 316
KroI	GCCGGC	1 cut(s)	172
KroNI	GCCGGC	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	67, 110
LpnPI	CCDG	7 cut(s)	34, 100, 108, 165, 186, 213, 240
Lsp1109I	GCAGC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	65
MalI	GATC	2 cut(s)	69, 112
MboI	GATC	2 cut(s)	67, 110
MboII	GAAGA	2 cut(s)	167, 275
MflI	RGATCY	1 cut(s)	67
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	4 cut(s)	73, 222, 228, 360
Mph1103I	ATGCAT	1 cut(s)	136
MroNI	GCCGGC	1 cut(s)	172
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	228
NaeI	GCCGGC	1 cut(s)	174
NdeII	GATC	2 cut(s)	67, 110
NgoMIV	GCCGGC	1 cut(s)	172
NlaIII	CATG	5 cut(s)	30, 101, 122, 138, 316
NlaIV	GGNNCC	1 cut(s)	53
NsiI	ATGCAT	1 cut(s)	136
NspI	RCATGY	2 cut(s)	30, 138
PciI	ACATGT	1 cut(s)	26
PdiI	GCCGGC	1 cut(s)	174
PfeI	GAWTC	3 cut(s)	115, 247, 266
PkrI	GCNGC	1 cut(s)	178
Ple19I	CGATCG	1 cut(s)	113
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PpuMI	RGGWCCY	1 cut(s)	51
PscI	ACATGT	1 cut(s)	26
Psp5II	RGGWCCY	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	51
PspPPI	RGGWCCY	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	67
PvuI	CGATCG	1 cut(s)	113
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	2 cut(s)	67, 110
Sau96I	GGNCC	1 cut(s)	51
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	228
SetI	ASST	6 cut(s)	53, 127, 164, 205, 220, 296
SfcI	CTRYAG	2 cut(s)	270, 280
SinI	GGWCC	1 cut(s)	51
SspI	AATATT	1 cut(s)	189
SspMI	CTAG	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	226
TaqI	TCGA	3 cut(s)	23, 113, 296
TfiI	GAWTC	3 cut(s)	115, 247, 266
TscAI	CASTG	1 cut(s)	244
TseI	GCWGC	1 cut(s)	176
TspDTI	ATGAA	4 cut(s)	28, 107, 114, 314
TspRI	CASTG	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	51
XbaI	TCTAGA	1 cut(s)	64
XceI	RCATGY	2 cut(s)	30, 138
XspI	CTAG	1 cut(s)	65
Zsp2I	ATGCAT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.