Rroxscaffold_1G00052580

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000201
Physical Location & Seq
Forward (+)
73373682 .. 73374288
607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00052580.1

Sequence Viewer

Length: 450 bp
ATGGCTCCTGAATATGCAGTAGATGGAACTTTCTCAATGAAATCCGATGTATTTAGTTTTGGAGTTGTACTGCTAGAGATATTGAGCAGGAAGAAGAACAGGGGATTTTGTCATCCAGATCACCATCTTAACCTTCTTGGACATGCATGGACACTATGGACTCAAAATAATCCTCTGGAACTGGTTGATGTGACGTTATGTGATTCTTGCAACACATCCGAAGTGTTGAGATGTCTTCATGTGGGCCTGTTATGTGTGCAACAAGCACCTGAAGATAGACCAAGCATGTCATCTGTGGTTCTAATGTTGGGAAGTGAAATTAAGTTGCCTACGCCAAAAGAGCCTGGTTTTTACACTGGACGGACCGTTCCAGTTCCTGAATCAACATCAACGACAAGTGACTTGTGCTCAGCAAATAGTTTCAGCACAATGTTCTTAGAATCTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

149

Amino Acids

16.46

Weight (kDa)

5.43

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 100 4.3e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 291
AfaI GTAC 1 cut(s) 69
AjnI CCWGG 1 cut(s) 343
AloI GAACNNNNNNTCC 2 cut(s) 351, 383
Alw21I GWGCWC 1 cut(s) 410
AlwNI CAGNNNCTG 1 cut(s) 377
AoxI GGCC 1 cut(s) 244
AspS9I GGNCC 2 cut(s) 244, 363
AsuHPI GGTGA 1 cut(s) 113
AvaII GGWCC 1 cut(s) 363
BbsI GAAGAC 1 cut(s) 227
Bbv12I GWGCWC 1 cut(s) 410
BccI CCATC 2 cut(s) 17, 132
BciT130I CCWGG 1 cut(s) 345
BfaI CTAG 2 cut(s) 74, 448
BlpI GCTNAGC 1 cut(s) 409
Bme1390I CCNGG 1 cut(s) 345
Bme18I GGWCC 1 cut(s) 363
BmgT120I GGNCC 2 cut(s) 244, 363
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 345
BpiI GAAGAC 1 cut(s) 227
Bpu1102I GCTNAGC 1 cut(s) 409
BsaBI GATNNNNATC 1 cut(s) 123
Bse1I ACTGG 3 cut(s) 186, 361, 371
Bse8I GATNNNNATC 1 cut(s) 123
BseBI CCWGG 1 cut(s) 345
BseGI GGATG 2 cut(s) 112, 215
BseJI GATNNNNATC 1 cut(s) 123
BseMII CTCAG 1 cut(s) 423
BseNI ACTGG 3 cut(s) 186, 361, 371
BshFI GGCC 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 410
BsnI GGCC 1 cut(s) 246
Bsp1286I GDGCHC 1 cut(s) 410
Bsp143I GATC 1 cut(s) 118
Bsp1720I GCTNAGC 1 cut(s) 409
BspANI GGCC 1 cut(s) 246
BspCNI CTCAG 1 cut(s) 422
BspLI GGNNCC 1 cut(s) 6
BsrI ACTGG 3 cut(s) 186, 361, 371
BssMI GATC 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 345
Bst4CI ACNGT 1 cut(s) 367
BstDEI CTNAG 2 cut(s) 409, 436
BstF5I GGATG 2 cut(s) 112, 215
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 340
BstNI CCWGG 1 cut(s) 345
BstNSI RCATGY 2 cut(s) 146, 289
BstSCI CCNGG 1 cut(s) 343
BstV2I GAAGAC 1 cut(s) 227
BsuRI GGCC 1 cut(s) 246
BtsCI GGATG 2 cut(s) 112, 215
BtsIMutI CAGTG 1 cut(s) 354
CaiI CAGNNNCTG 1 cut(s) 377
Cfr13I GGNCC 2 cut(s) 244, 363
CpoI CGGWCCG 1 cut(s) 363
Csp6I GTAC 1 cut(s) 68
CspI CGGWCCG 1 cut(s) 363
CviAII CATG 4 cut(s) 143, 147, 239, 286
CviJI RGCY 3 cut(s) 5, 246, 343
CviKI_1 RGCY 3 cut(s) 5, 246, 343
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 2 cut(s) 409, 436
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 291
EcoRII CCWGG 1 cut(s) 343
EcoT22I ATGCAT 1 cut(s) 148
FaeI CATG 4 cut(s) 146, 150, 242, 289
FaiI YATR 8 cut(s) 15, 144, 148, 157, 199, 240, 253, 287
FatI CATG 4 cut(s) 142, 146, 238, 285
FokI GGATG 2 cut(s) 99, 202
FspBI CTAG 2 cut(s) 74, 448
HaeIII GGCC 1 cut(s) 246
Hin1II CATG 4 cut(s) 146, 150, 242, 289
HinfI GANTC 4 cut(s) 160, 203, 380, 440
HphI GGTGA 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 46, 220
Hpy188III TCNNGA 4 cut(s) 8, 116, 176, 377
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 4 cut(s) 17, 146, 210, 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 340
HpyF3I CTNAG 2 cut(s) 409, 436
HpySE526I ACGT 1 cut(s) 194
Hsp92II CATG 4 cut(s) 146, 150, 242, 289
Kzo9I GATC 1 cut(s) 118
LmnI GCTCC 1 cut(s) 10
MaeI CTAG 2 cut(s) 74, 448
MaeII ACGT 1 cut(s) 194
MaeIII GTNAC 2 cut(s) 190, 398
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 4 cut(s) 103, 106, 227, 284
MhlI GDGCHC 1 cut(s) 410
MluCI AATT 1 cut(s) 318
MlyI GAGTC 1 cut(s) 154
MnlI CCTC 1 cut(s) 183
Mph1103I ATGCAT 1 cut(s) 148
MseI TTAA 2 cut(s) 129, 321
MspR9I CCNGG 1 cut(s) 345
MvaI CCWGG 1 cut(s) 345
MwoI GCNNNNNNNGC 1 cut(s) 340
NdeII GATC 1 cut(s) 118
NlaIII CATG 4 cut(s) 146, 150, 242, 289
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 190, 398
NsiI ATGCAT 1 cut(s) 148
NspI RCATGY 2 cut(s) 146, 289
PfeI GAWTC 3 cut(s) 203, 380, 440
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 343
PspGI CCWGG 1 cut(s) 343
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 244, 363
PstNI CAGNNNCTG 1 cut(s) 377
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
Rsr2I CGGWCCG 1 cut(s) 363
RsrII CGGWCCG 1 cut(s) 363
SaqAI TTAA 2 cut(s) 129, 321
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 2 cut(s) 244, 363
SchI GAGTC 1 cut(s) 154
ScrFI CCNGG 1 cut(s) 345
SduI GDGCHC 1 cut(s) 410
SetI ASST 3 cut(s) 135, 197, 271
SinI GGWCC 1 cut(s) 363
Sse9I AATT 1 cut(s) 318
SspMI CTAG 2 cut(s) 74, 448
StyD4I CCNGG 1 cut(s) 343
TaaI ACNGT 1 cut(s) 367
TaiI ACGT 1 cut(s) 197
TasI AATT 1 cut(s) 318
TatI WGTACW 1 cut(s) 67
TfiI GAWTC 3 cut(s) 203, 380, 440
Tru1I TTAA 2 cut(s) 129, 321
Tru9I TTAA 2 cut(s) 129, 321
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 2 cut(s) 190, 398
Tsp45I GTSAC 2 cut(s) 190, 398
TspDTI ATGAA 2 cut(s) 53, 227
TspGWI ACGGA 1 cut(s) 376
TspRI CASTG 1 cut(s) 361
VpaK11BI GGWCC 1 cut(s) 363
XceI RCATGY 2 cut(s) 146, 289
XspI CTAG 2 cut(s) 74, 448
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.