Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000201

Physical Location & Seq

Genomic Coordinates Reverse (-)

20569199 .. 20569743

Gene Structure 545 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032895

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTCCCCAGAATACACAATTGATGGTTTCTACTCGATAAAATCTGATGTCTACGTACAACTATGGAGTTTTGGTGCTAGAGATGGTGAGTGGGAAGTGAAACTGAGGATTCTCACATCCAGGCCACAATCTCAACCTTTTTGGACATGTGAGCCGTTCATAGAAGGCAGGTCCATTGAACTTCTTGATCCGTTGGTAGAGGACTCCAGCACTCTACATGAAGTTGTGCGATCGATTCATGTAGGTCTTTTATGTGTGCAACAAAAACCACAAGATAGGCCAAGTATGTCAGCTGCTATTCTAATATTGAGTGGTGAAGGTGCATTGCCTGAACCTCAGAAGCCTGGTTTTTTAAGTGAAAGGAATCTGACAGAACTTGAAGATTCTACAGATGAGGCTACAGAATGTTCAGCTAATGAACTCACTGTTACACAAGTGGGGGCTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

150

Amino Acids

16.64

Weight (kDa)

4.47

Isoelectric Point (pI)

68.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3403	PF11883	106 - 149	1e-06	Domain of unknown function (DUF3403)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21366
fragaria_vesca	FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica	MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica	Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis	pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis	RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata	RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora	Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa	Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha	Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana	Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	159
AccI	GTMKAC	1 cut(s)	51
AclWI	GGATC	1 cut(s)	182
AfaI	GTAC	1 cut(s)	57
AflIII	ACRYGT	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	179, 380
AjnI	CCWGG	2 cut(s)	119, 343
AluBI	AGCT	2 cut(s)	293, 413
AluI	AGCT	2 cut(s)	293, 413
AlwI	GGATC	1 cut(s)	182
AoxI	GGCC	2 cut(s)	122, 278
ApeKI	GCWGC	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	171
AsuHPI	GGTGA	2 cut(s)	98, 326
AvaII	GGWCC	1 cut(s)	171
BanII	GRGCYC	1 cut(s)	445
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	2 cut(s)	17, 77
BceAI	ACGGC	1 cut(s)	139
BciT130I	CCWGG	2 cut(s)	121, 345
BfaI	CTAG	1 cut(s)	78
BfmI	CTRYAG	2 cut(s)	387, 399
BfuAI	ACCTGC	1 cut(s)	159
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	2 cut(s)	121, 345
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	171
BmrFI	CCNGG	2 cut(s)	121, 345
BpmI	CTGGAG	1 cut(s)	190
Bsa29I	ATCGAT	1 cut(s)	233
BsaAI	YACGTR	1 cut(s)	55
BsaXI	ACNNNNNCTCC	2 cut(s)	58, 88
Bse3DI	GCAATG	1 cut(s)	323
BseBI	CCWGG	2 cut(s)	121, 345
BseCI	ATCGAT	1 cut(s)	233
BseGI	GGATG	1 cut(s)	116
BseMI	GCAATG	1 cut(s)	323
BseMII	CTCAG	2 cut(s)	95, 350
BseXI	GCAGC	1 cut(s)	280
Bsh1285I	CGRYCG	1 cut(s)	233
BshFI	GGCC	2 cut(s)	124, 280
BshVI	ATCGAT	1 cut(s)	233
BsiEI	CGRYCG	1 cut(s)	233
BsnI	GGCC	2 cut(s)	124, 280
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	2 cut(s)	187, 230
BspANI	GGCC	2 cut(s)	124, 280
BspCNI	CTCAG	2 cut(s)	96, 349
BspDI	ATCGAT	1 cut(s)	233
BspMI	ACCTGC	1 cut(s)	159
BspPI	GGATC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	323
BssMI	GATC	2 cut(s)	187, 230
Bst2UI	CCWGG	2 cut(s)	121, 345
Bst4CI	ACNGT	1 cut(s)	427
BstBAI	YACGTR	1 cut(s)	55
BstDEI	CTNAG	2 cut(s)	104, 336
BstF5I	GGATG	1 cut(s)	116
BstKTI	GATC	2 cut(s)	190, 233
BstMBI	GATC	2 cut(s)	187, 230
BstMCI	CGRYCG	1 cut(s)	233
BstNI	CCWGG	2 cut(s)	121, 345
BstNSI	RCATGY	1 cut(s)	150
BstSCI	CCNGG	2 cut(s)	119, 343
BstSFI	CTRYAG	2 cut(s)	387, 399
BstSNI	TACGTA	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	280
Bsu15I	ATCGAT	1 cut(s)	233
BsuRI	GGCC	2 cut(s)	124, 280
BsuTUI	ATCGAT	1 cut(s)	233
BtsCI	GGATG	1 cut(s)	116
BtsIMutI	CAGTG	1 cut(s)	423
BveI	ACCTGC	1 cut(s)	159
Cfr13I	GGNCC	1 cut(s)	171
ClaI	ATCGAT	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	3 cut(s)	147, 218, 239
CviJI	RGCY	8 cut(s)	124, 154, 280, 293, 343, 398, 413, 443
CviKI_1	RGCY	8 cut(s)	124, 154, 280, 293, 343, 398, 413, 443
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	2 cut(s)	104, 336
DpnI	GATC	2 cut(s)	189, 232
DpnII	GATC	2 cut(s)	187, 230
Eco105I	TACGTA	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	445
Eco47I	GGWCC	1 cut(s)	171
EcoRII	CCWGG	2 cut(s)	119, 343
EcoT38I	GRGCYC	1 cut(s)	445
FaeI	CATG	3 cut(s)	150, 221, 242
FaiI	YATR	7 cut(s)	64, 148, 161, 219, 240, 253, 287
FatI	CATG	3 cut(s)	146, 217, 238
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	1 cut(s)	103
FriOI	GRGCYC	1 cut(s)	445
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	1 cut(s)	78
GluI	GCNGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	190
HaeIII	GGCC	2 cut(s)	124, 280
Hin1II	CATG	3 cut(s)	150, 221, 242
HinfI	GANTC	5 cut(s)	109, 203, 235, 364, 383
HphI	GGTGA	2 cut(s)	98, 326
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	3 cut(s)	46, 339, 369
Hpy188III	TCNNGA	1 cut(s)	185
Hpy8I	GTNNAC	1 cut(s)	52
HpyAV	CCTTC	2 cut(s)	158, 311
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	2 cut(s)	259, 323
HpyF3I	CTNAG	2 cut(s)	104, 336
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	3 cut(s)	150, 221, 242
Kzo9I	GATC	2 cut(s)	187, 230
LpnPI	CCDG	8 cut(s)	21, 106, 133, 154, 220, 330, 342, 357
Lsp1109I	GCAGC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	2 cut(s)	189, 232
MboI	GATC	2 cut(s)	187, 230
MboII	GAAGA	1 cut(s)	392
MfeI	CAATTG	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	445
MluCI	AATT	1 cut(s)	18
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	4 cut(s)	99, 193, 345, 388
MseI	TTAA	1 cut(s)	353
MspA1I	CMGCKG	1 cut(s)	293
MspR9I	CCNGG	2 cut(s)	121, 345
MunI	CAATTG	1 cut(s)	18
MvaI	CCWGG	2 cut(s)	121, 345
NdeII	GATC	2 cut(s)	187, 230
NlaIII	CATG	3 cut(s)	150, 221, 242
NspI	RCATGY	1 cut(s)	150
PciI	ACATGT	1 cut(s)	146
PfeI	GAWTC	4 cut(s)	109, 235, 364, 383
PkrI	GCNGC	1 cut(s)	295
Ple19I	CGATCG	1 cut(s)	233
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
Ppu21I	YACGTR	1 cut(s)	55
PscI	ACATGT	1 cut(s)	146
Psp6I	CCWGG	2 cut(s)	119, 343
PspGI	CCWGG	2 cut(s)	119, 343
PspPI	GGNCC	1 cut(s)	171
PvuI	CGATCG	1 cut(s)	233
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	353
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	2 cut(s)	187, 230
Sau96I	GGNCC	1 cut(s)	171
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	2 cut(s)	121, 345
SduI	GDGCHC	1 cut(s)	445
SetI	ASST	8 cut(s)	57, 139, 173, 247, 295, 322, 337, 415
SfcI	CTRYAG	2 cut(s)	387, 399
SinI	GGWCC	1 cut(s)	171
SnaBI	TACGTA	1 cut(s)	55
Sse9I	AATT	1 cut(s)	18
SspI	AATATT	1 cut(s)	306
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	119, 343
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	3 cut(s)	35, 233, 445
TasI	AATT	1 cut(s)	18
TfiI	GAWTC	4 cut(s)	109, 235, 364, 383
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TscAI	CASTG	1 cut(s)	430
TseI	GCWGC	1 cut(s)	293
TspDTI	ATGAA	4 cut(s)	148, 227, 234, 432
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	1 cut(s)	430
VpaK11BI	GGWCC	1 cut(s)	171
XceI	RCATGY	1 cut(s)	150
XmiI	GTMKAC	1 cut(s)	51
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.