Rmu_sc0006968.1_g000018

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006968.1
OG0000201
Physical Location & Seq
Forward (+)
79436 .. 81418
1983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006968.1_g000018.1.cds

Sequence Viewer

Length: 630 bp
atgccctcgctctccggctctctaaccttcacgccacctccaagctcctccaccatactccccgccctccgcctctccaagaagctccacgacctcaccgaggatgagaagaaaggtttggggcgggtgcgagggtcggagttggccttttcagcccgacgacctccagctccgaattgggcgaaagtgagagattatggcttgaatcaggtttggggagatagagagaagttacagaagcttgtgcctacgccgcctactccaatcgaggaggaggacgaggatcaagatggcatggtgtggagcttcagattgaagggaggtagaggtggaagtgtggtcatcgatatagagagagaagaagaagaaaaaagattgatcaggggtaatcaatcaccacctgaaataacatattcagttggttgtgaccgcactgaagctttgaattgccaaaataaagaggatgggtttgtggaatatgctagggtaaagttgctagatactatagattctcgggttaaccagagtatgagtatgatggaatgcagggaaaattgcttgaacaattgttcttgtgtggcttatgcaagctctaatgtcaatggctgcactatttggccggtttggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

209

Amino Acids

23.42

Weight (kDa)

5.27

Isoelectric Point (pI)

66.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 63, 70, 124, 254, 430
AclWI GGATC 1 cut(s) 291
AcoI YGGCCR 1 cut(s) 617
AcuI CTGAAG 2 cut(s) 292, 456
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 4 cut(s) 205, 316, 445, 562
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 7 cut(s) 45, 85, 170, 241, 306, 440, 591
AluI AGCT 7 cut(s) 45, 85, 170, 241, 306, 440, 591
AlwI GGATC 1 cut(s) 291
Ama87I CYCGRG 1 cut(s) 513
AoxI GGCC 2 cut(s) 144, 617
ApeKI GCWGC 1 cut(s) 606
AsuHPI GGTGA 2 cut(s) 88, 387
AvaI CYCGRG 1 cut(s) 513
BbvI GCAGC 1 cut(s) 593
BccI CCATC 3 cut(s) 284, 458, 532
BclI TGATCA 1 cut(s) 378
BfaI CTAG 2 cut(s) 483, 497
BfmI CTRYAG 1 cut(s) 504
BisI GCNGC 2 cut(s) 254, 607
BlsI GCNGC 2 cut(s) 255, 608
BmeT110I CYCGRG 1 cut(s) 513
BpmI CTGGAG 1 cut(s) 150
Bsa29I ATCGAT 1 cut(s) 345
BsaJI CCNNGG 1 cut(s) 99
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse118I RCCGGY 1 cut(s) 619
BseCI ATCGAT 1 cut(s) 345
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 2 cut(s) 109, 469
BseLI CCNNNNNNNGG 1 cut(s) 100
BseRI GAGGAG 3 cut(s) 37, 284, 287
BseXI GCAGC 1 cut(s) 593
BsgI GTGCAG 1 cut(s) 592
BshFI GGCC 2 cut(s) 146, 619
BshVI ATCGAT 1 cut(s) 345
BsiHKCI CYCGRG 1 cut(s) 513
BsiSI CCGG 2 cut(s) 15, 620
BslI CCNNNNNNNGG 1 cut(s) 100
BsmI GAATGC 1 cut(s) 548
BsnI GGCC 2 cut(s) 146, 619
BsoBI CYCGRG 1 cut(s) 513
Bsp143I GATC 2 cut(s) 283, 378
BspACI CCGC 5 cut(s) 63, 70, 124, 254, 430
BspANI GGCC 2 cut(s) 146, 619
BspDI ATCGAT 1 cut(s) 345
BspPI GGATC 1 cut(s) 291
BsrFI RCCGGY 1 cut(s) 619
BssAI RCCGGY 1 cut(s) 619
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 2 cut(s) 283, 378
BstC8I GCNNGC 1 cut(s) 589
BstENI CCTNNNNNAGG 1 cut(s) 98
BstF5I GGATG 2 cut(s) 109, 469
BstKTI GATC 2 cut(s) 286, 381
BstMBI GATC 2 cut(s) 283, 378
BstMWI GCNNNNNNNGC 2 cut(s) 152, 253
BstSFI CTRYAG 1 cut(s) 504
BstV1I GCAGC 1 cut(s) 593
Bsu15I ATCGAT 1 cut(s) 345
BsuRI GGCC 2 cut(s) 146, 619
BsuTUI ATCGAT 1 cut(s) 345
BtsCI GGATG 2 cut(s) 109, 469
BtsIMutI CAGTG 1 cut(s) 432
Cac8I GCNNGC 1 cut(s) 589
Cfr10I RCCGGY 1 cut(s) 619
ClaI ATCGAT 1 cut(s) 345
CviAII CATG 1 cut(s) 295
DpnI GATC 2 cut(s) 285, 380
DpnII GATC 2 cut(s) 283, 378
EaeI YGGCCR 1 cut(s) 617
EciI GGCGGA 1 cut(s) 59
Eco57I CTGAAG 2 cut(s) 292, 456
Eco88I CYCGRG 1 cut(s) 513
EcoNI CCTNNNNNAGG 1 cut(s) 98
FaeI CATG 1 cut(s) 298
FatI CATG 1 cut(s) 294
FauI CCCGC 2 cut(s) 70, 117
FbaI TGATCA 1 cut(s) 378
Fnu4HI GCNGC 2 cut(s) 254, 607
FokI GGATG 2 cut(s) 116, 476
Fsp4HI GCNGC 2 cut(s) 254, 607
FspBI CTAG 2 cut(s) 483, 497
GluI GCNGC 2 cut(s) 254, 607
GsuI CTGGAG 1 cut(s) 150
HaeIII GGCC 2 cut(s) 146, 619
HapII CCGG 2 cut(s) 15, 620
Hin1II CATG 1 cut(s) 298
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HindIII AAGCTT 2 cut(s) 239, 438
HinfI GANTC 2 cut(s) 205, 509
HpaI GTTAAC 1 cut(s) 520
HpaII CCGG 2 cut(s) 15, 620
HphI GGTGA 2 cut(s) 88, 387
Hpy166II GTNNAC 1 cut(s) 520
Hpy188I TCNGA 3 cut(s) 139, 174, 311
Hpy188III TCNNGA 1 cut(s) 287
Hpy8I GTNNAC 1 cut(s) 520
Hpy99I CGWCG 1 cut(s) 162
HpyAV CCTTC 2 cut(s) 37, 310
HpyCH4V TGCA 3 cut(s) 546, 587, 609
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 253
Hsp92II CATG 1 cut(s) 298
Ksp22I TGATCA 1 cut(s) 378
KspAI GTTAAC 1 cut(s) 520
Kzo9I GATC 2 cut(s) 283, 378
LmnI GCTCC 4 cut(s) 50, 90, 175, 303
LpnPI CCDG 7 cut(s) 28, 180, 194, 367, 414, 532, 536
Lsp1109I GCAGC 1 cut(s) 593
MaeI CTAG 2 cut(s) 483, 497
MaeIII GTNAC 2 cut(s) 231, 425
MalI GATC 2 cut(s) 285, 380
MboI GATC 2 cut(s) 283, 378
MboII GAAGA 4 cut(s) 121, 371, 374, 377
MfeI CAATTG 1 cut(s) 565
MluCI AATT 4 cut(s) 175, 445, 553, 565
MmeI TCCRAC 1 cut(s) 117
MseI TTAA 1 cut(s) 519
MspI CCGG 2 cut(s) 15, 620
MunI CAATTG 1 cut(s) 565
Mva1269I GAATGC 1 cut(s) 548
MwoI GCNNNNNNNGC 2 cut(s) 152, 253
NdeII GATC 2 cut(s) 283, 378
NlaIII CATG 1 cut(s) 298
NmuCI GTSAC 1 cut(s) 425
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 1 cut(s) 548
PfeI GAWTC 2 cut(s) 205, 509
PkrI GCNGC 2 cut(s) 255, 608
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 2 cut(s) 254, 607
Sau3AI GATC 2 cut(s) 283, 378
SfcI CTRYAG 1 cut(s) 504
Sse9I AATT 4 cut(s) 175, 445, 553, 565
SsiI CCGC 5 cut(s) 63, 70, 124, 254, 430
SspMI CTAG 2 cut(s) 483, 497
TaqI TCGA 2 cut(s) 267, 345
TasI AATT 4 cut(s) 175, 445, 553, 565
TauI GCSGC 1 cut(s) 256
TfiI GAWTC 2 cut(s) 205, 509
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 1 cut(s) 439
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 1 cut(s) 606
Tsp45I GTSAC 1 cut(s) 425
TspRI CASTG 1 cut(s) 439
XagI CCTNNNNNAGG 1 cut(s) 98
XcmI CCANNNNNNNNNTGG 1 cut(s) 174
XspI CTAG 2 cut(s) 483, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.