RchiOBHm_Chr5g0035871

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
29924684 .. 29926553
1870 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31471

Sequence Viewer

Length: 1272 bp
ATGCAAAGTCAGGTGGTTCTCTTAGCAAGAAGGCAAGGCTGGCATTTTCACTTGGATCTGTCACAGTTTTTATTCTCTTACTTACCCTTTATTGGTTGCTATGAATATGGAAAGCGTAGGCAAAATAAATATTCATTTGAACTTACTTTTTTGTGTTTGATAATAGGCAAGCGTAGGCAAAATAAATATTCATTTGAACTTACTGCTGGGTCAACCTACTTCGAAGAAGCTACTGGTGGATTAGTTCTTGATGATAGTAGAATAAACTCGGAATTACTATTATTTCATCTAAACACCATAGCCACCGCCACAAACAATTTCTCCATTGAAAACAAGCTTGGAGAAGGAGGGTTTGGCCCCGTTTATAAGGGGATACTTTACGATGGAAAAGAAATAGCCGTAAAAAGACTATCCAAGTTTTCTGGCCAAGGAGTTGAAGAGTTTAAGAATGAAGTTCTTCTGATTGCAAAACTCCAACATAGAAACCTTGTTAAGATTTTAGGTTGTTGTTTTGAAGGTGAAGAGAAGATTCTAATCTATGAATACTTGCCAAACAAAAGTTTGGACTCTTTCATCTTTAATGAAACAAGGAGAGCAATTTTAAGTTGGACAAGACGCTTCGAGATTATCTTGGGGATTGCTAGAGGCTTATTATATCTTCATGAAGATTCAAGACTAAGAATTATCCATAGAGATCTAAAGGCCAGCAATGTTCTATTGGATAATTCTTTGAACCCAAAGATTGCAGATTTTGGTATCGCTAGAATATTTAGAGGGGAGCAAACTGAAGCAAATACAAAACGTGTGGTTGGAACATATGGTTATATGTCACCGGAATATGCAATGGAAGGACTATTTTCAATAAAGTCTGACGTGTATAGTTTTGGTGTTTTATTGCTAGAAATTATTACTGGCAAAAAGAATGCTGGTTCCTATGAGAAGTATCCATATTCAAATTTGATTGGACATGTTTGGGAGTTGTGGAAAGAAGGCAGAGCTGTGGAAATCATTGATTCATCTATAGGTGAATCTTACCTTGTTAGTGAAATAATAAGGTGCATTCAAATCGCACTCCTGTGTGTGCAAGAATTTGCAACTGACCGGCCAACCATGTCGGCAGTTGTTTCAATGTTAAGTAATGATGCAGCTTTTCCTTCACCAAGACGACCCGCATTTTTACTGAAGACAATGAGTCCTAGTGGAGACTCATCCAACAACAAAGGAGGTTGTTCAGTAAATGATGTCACATGTACAATTGTAGAAGCTCGCTAA

Protein Analysis

423

Amino Acids

47.88

Weight (kDa)

8.28

Isoelectric Point (pI)

50.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 108 - 377 1.1e-47 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 108 - 374 7.3e-43 Protein kinase domain
DUF3403 PF11883 379 - 423 6.5e-08 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
AciI CCGC 2 cut(s) 306, 1170
AclWI GGATC 1 cut(s) 63
AcoI YGGCCR 2 cut(s) 424, 1103
AcsI RAATTY 2 cut(s) 955, 1088
AcuI CTGAAG 2 cut(s) 807, 1202
AfaI GTAC 1 cut(s) 1252
AfiI CCNNNNNNNGG 1 cut(s) 92
AflIII ACRYGT 4 cut(s) 802, 873, 967, 1247
AhdI GACNNNNNGTC 1 cut(s) 1191
AjiI CACGTC 1 cut(s) 874
AjuI GAANNNNNNNTTGG 4 cut(s) 321, 336, 353, 368
AleI CACNNNNGTG 1 cut(s) 1075
AluBI AGCT 5 cut(s) 230, 337, 998, 1148, 1265
AluI AGCT 5 cut(s) 230, 337, 998, 1148, 1265
Alw26I GTCTC 1 cut(s) 1197
AlwI GGATC 1 cut(s) 63
AoxI GGCC 4 cut(s) 355, 424, 702, 1103
ApeKI GCWGC 1 cut(s) 1145
ApoI RAATTY 2 cut(s) 955, 1088
Asp700I GAANNNNTTC 1 cut(s) 456
AspS9I GGNCC 1 cut(s) 356
AsuHPI GGTGA 4 cut(s) 530, 822, 1037, 1149
AsuII TTCGAA 1 cut(s) 222
BalI TGGCCA 1 cut(s) 426
BbsI GAAGAC 1 cut(s) 1190
BbvI GCAGC 1 cut(s) 1157
BccI CCATC 1 cut(s) 377
BceAI ACGGC 1 cut(s) 383
BcgI CGANNNNNNTGC 2 cut(s) 1048, 1082
BciVI GTATCC 2 cut(s) 366, 954
BcoDI GTCTC 1 cut(s) 1197
BfaI CTAG 4 cut(s) 642, 762, 899, 1197
BfmI CTRYAG 1 cut(s) 1020
BfuI GTATCC 2 cut(s) 366, 954
BglII AGATCT 1 cut(s) 694
BisI GCNGC 1 cut(s) 1146
BlsI GCNGC 1 cut(s) 1147
BmeRI GACNNNNNGTC 1 cut(s) 1191
BmgBI CACGTC 1 cut(s) 874
BmgT120I GGNCC 1 cut(s) 356
BmiI GGNNCC 2 cut(s) 358, 931
BmsI GCATC 1 cut(s) 1132
BpiI GAAGAC 1 cut(s) 1190
Bpu14I TTCGAA 1 cut(s) 222
BsaBI GATNNNNATC 1 cut(s) 533
BsaJI CCNNGG 1 cut(s) 427
BsaWI WCCGGW 1 cut(s) 832
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse118I RCCGGY 1 cut(s) 1101
Bse1I ACTGG 2 cut(s) 238, 916
Bse3DI GCAATG 2 cut(s) 715, 849
Bse8I GATNNNNATC 1 cut(s) 533
BseDI CCNNGG 1 cut(s) 427
BseGI GGATG 1 cut(s) 1208
BseJI GATNNNNATC 1 cut(s) 533
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMI GCAATG 2 cut(s) 715, 849
BseNI ACTGG 2 cut(s) 238, 916
BseXI GCAGC 1 cut(s) 1157
BseYI CCCAGC 1 cut(s) 206
BshFI GGCC 4 cut(s) 357, 426, 704, 1105
BsiSI CCGG 2 cut(s) 833, 1102
BslI CCNNNNNNNGG 1 cut(s) 92
BsmAI GTCTC 1 cut(s) 1197
BsmI GAATGC 2 cut(s) 928, 1059
BsnI GGCC 4 cut(s) 357, 426, 704, 1105
Bsp119I TTCGAA 1 cut(s) 222
Bsp1407I TGTACA 1 cut(s) 1250
Bsp143I GATC 2 cut(s) 55, 694
BspACI CCGC 2 cut(s) 306, 1170
BspANI GGCC 4 cut(s) 357, 426, 704, 1105
BspHI TCATGA 1 cut(s) 661
BspLI GGNNCC 2 cut(s) 358, 931
BspPI GGATC 1 cut(s) 63
BspT104I TTCGAA 1 cut(s) 222
BsrDI GCAATG 2 cut(s) 715, 849
BsrFI RCCGGY 1 cut(s) 1101
BsrGI TGTACA 1 cut(s) 1250
BsrI ACTGG 2 cut(s) 238, 916
BssAI RCCGGY 1 cut(s) 1101
BssECI CCNNGG 1 cut(s) 427
BssMI GATC 2 cut(s) 55, 694
BssT1I CCWWGG 1 cut(s) 427
Bst4CI ACNGT 1 cut(s) 66
Bst6I CTCTTC 2 cut(s) 432, 516
BstAUI TGTACA 1 cut(s) 1250
BstBI TTCGAA 1 cut(s) 222
BstC8I GCNNGC 4 cut(s) 41, 170, 706, 1267
BstDEI CTNAG 2 cut(s) 22, 677
BstF5I GGATG 1 cut(s) 1208
BstKTI GATC 2 cut(s) 58, 697
BstMAI GTCTC 1 cut(s) 1197
BstMBI GATC 2 cut(s) 55, 694
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNSI RCATGY 2 cut(s) 971, 1251
BstSFI CTRYAG 1 cut(s) 1020
BstV1I GCAGC 1 cut(s) 1157
BstV2I GAAGAC 1 cut(s) 1190
BstX2I RGATCY 2 cut(s) 55, 694
BstYI RGATCY 2 cut(s) 55, 694
BsuI GTATCC 2 cut(s) 366, 954
BsuRI GGCC 4 cut(s) 357, 426, 704, 1105
BtrI CACGTC 1 cut(s) 874
BtsCI GGATG 1 cut(s) 1208
Cac8I GCNNGC 4 cut(s) 41, 170, 706, 1267
CciI TCATGA 1 cut(s) 661
Cfr10I RCCGGY 1 cut(s) 1101
Cfr13I GGNCC 1 cut(s) 356
CseI GACGC 1 cut(s) 624
Csp6I GTAC 1 cut(s) 1251
CspCI CAANNNNNGTGG 2 cut(s) 786, 821
CviAII CATG 4 cut(s) 662, 968, 1111, 1248
CviQI GTAC 1 cut(s) 1251
DdeI CTNAG 2 cut(s) 22, 677
DpnI GATC 2 cut(s) 57, 696
DpnII GATC 2 cut(s) 55, 694
DriI GACNNNNNGTC 1 cut(s) 1191
EaeI YGGCCR 2 cut(s) 424, 1103
Eam1104I CTCTTC 2 cut(s) 432, 516
Eam1105I GACNNNNNGTC 1 cut(s) 1191
EarI CTCTTC 2 cut(s) 432, 516
Eco130I CCWWGG 1 cut(s) 427
Eco57I CTGAAG 2 cut(s) 807, 1202
EcoT14I CCWWGG 1 cut(s) 427
ErhI CCWWGG 1 cut(s) 427
FaeI CATG 4 cut(s) 665, 971, 1114, 1251
FatI CATG 4 cut(s) 661, 967, 1110, 1247
FauI CCCGC 1 cut(s) 1177
FauNDI CATATG 1 cut(s) 817
Fnu4HI GCNGC 1 cut(s) 1146
FokI GGATG 1 cut(s) 1195
Fsp4HI GCNGC 1 cut(s) 1146
FspBI CTAG 4 cut(s) 642, 762, 899, 1197
GluI GCNGC 1 cut(s) 1146
GsaI CCCAGC 1 cut(s) 210
HaeIII GGCC 4 cut(s) 357, 426, 704, 1105
HapII CCGG 2 cut(s) 833, 1102
HgaI GACGC 1 cut(s) 624
Hin1II CATG 4 cut(s) 665, 971, 1114, 1251
HincII GTYRAC 1 cut(s) 213
HindII GTYRAC 1 cut(s) 213
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 7 cut(s) 529, 566, 668, 1013, 1028, 1192, 1205
HpaII CCGG 2 cut(s) 833, 1102
HphI GGTGA 4 cut(s) 530, 822, 1037, 1149
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 3 cut(s) 271, 462, 871
Hpy188III TCNNGA 4 cut(s) 248, 622, 662, 672
Hpy8I GTNNAC 1 cut(s) 213
HpyAV CCTTC 6 cut(s) 24, 338, 509, 842, 983, 1164
HpyCH4III ACNGT 1 cut(s) 66
HpyCH4IV ACGT 2 cut(s) 802, 873
HpyCH4V TGCA 8 cut(s) 4, 467, 746, 842, 1059, 1084, 1094, 1145
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 2 cut(s) 22, 677
HpySE526I ACGT 2 cut(s) 802, 873
Hsp92II CATG 4 cut(s) 665, 971, 1114, 1251
Kzo9I GATC 2 cut(s) 55, 694
LmnI GCTCC 1 cut(s) 778
Lsp1109I GCAGC 1 cut(s) 1157
LweI GCATC 1 cut(s) 1132
MaeI CTAG 4 cut(s) 642, 762, 899, 1197
MaeII ACGT 2 cut(s) 802, 873
MaeIII GTNAC 3 cut(s) 60, 828, 1243
MalI GATC 2 cut(s) 57, 696
MboI GATC 2 cut(s) 55, 694
MboII GAAGA 8 cut(s) 236, 449, 449, 533, 538, 650, 677, 1195
MfeI CAATTG 1 cut(s) 1254
MflI RGATCY 2 cut(s) 55, 694
MlsI TGGCCA 1 cut(s) 426
MluCI AATT 9 cut(s) 272, 316, 597, 681, 724, 903, 955, 1088, 1254
MluNI TGGCCA 1 cut(s) 426
MlyI GAGTC 3 cut(s) 560, 1199, 1201
MmeI TCCRAC 4 cut(s) 499, 587, 790, 1236
MnlI CCTC 4 cut(s) 341, 638, 767, 1217
Mox20I TGGCCA 1 cut(s) 426
MroXI GAANNNNTTC 1 cut(s) 456
MscI TGGCCA 1 cut(s) 426
MseI TTAA 5 cut(s) 444, 492, 579, 602, 1133
MslI CAYNNNNRTG 1 cut(s) 1075
Msp20I TGGCCA 1 cut(s) 426
MspI CCGG 2 cut(s) 833, 1102
MunI CAATTG 1 cut(s) 1254
Mva1269I GAATGC 2 cut(s) 928, 1059
MwoI GCNNNNNNNGC 1 cut(s) 40
NdeI CATATG 1 cut(s) 817
NdeII GATC 2 cut(s) 55, 694
NlaIII CATG 4 cut(s) 665, 971, 1114, 1251
NlaIV GGNNCC 2 cut(s) 358, 931
NmuCI GTSAC 3 cut(s) 60, 828, 1243
NspI RCATGY 2 cut(s) 971, 1251
NspV TTCGAA 1 cut(s) 222
OliI CACNNNNGTG 1 cut(s) 1075
PagI TCATGA 1 cut(s) 661
PciI ACATGT 2 cut(s) 967, 1247
PctI GAATGC 2 cut(s) 928, 1059
PdmI GAANNNNTTC 1 cut(s) 456
PfeI GAWTC 4 cut(s) 529, 668, 1013, 1028
PkrI GCNGC 1 cut(s) 1147
PleI GAGTC 3 cut(s) 560, 1199, 1200
PpsI GAGTC 3 cut(s) 560, 1199, 1200
PscI ACATGT 2 cut(s) 967, 1247
PsiI TTATAA 1 cut(s) 366
PspFI CCCAGC 1 cut(s) 206
PspN4I GGNNCC 2 cut(s) 358, 931
PspPI GGNCC 1 cut(s) 356
PsuI RGATCY 2 cut(s) 55, 694
RsaI GTAC 1 cut(s) 1252
RsaNI GTAC 1 cut(s) 1251
RseI CAYNNNNRTG 1 cut(s) 1075
SaqAI TTAA 5 cut(s) 444, 492, 579, 602, 1133
SatI GCNGC 1 cut(s) 1146
Sau3AI GATC 2 cut(s) 55, 694
Sau96I GGNCC 1 cut(s) 356
SchI GAGTC 3 cut(s) 560, 1199, 1201
SfaNI GCATC 1 cut(s) 1132
SfcI CTRYAG 1 cut(s) 1020
SfuI TTCGAA 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 1075
Sse9I AATT 9 cut(s) 272, 316, 597, 681, 724, 903, 955, 1088, 1254
SsiI CCGC 2 cut(s) 306, 1170
SspI AATATT 3 cut(s) 131, 188, 768
SspMI CTAG 4 cut(s) 642, 762, 899, 1197
StyI CCWWGG 1 cut(s) 427
TaaI ACNGT 1 cut(s) 66
TaiI ACGT 2 cut(s) 805, 876
TaqI TCGA 2 cut(s) 222, 621
TasI AATT 9 cut(s) 272, 316, 597, 681, 724, 903, 955, 1088, 1254
TatI WGTACW 1 cut(s) 1250
TfiI GAWTC 4 cut(s) 529, 668, 1013, 1028
Tru1I TTAA 5 cut(s) 444, 492, 579, 602, 1133
Tru9I TTAA 5 cut(s) 444, 492, 579, 602, 1133
TseFI GTSAC 3 cut(s) 60, 828, 1243
TseI GCWGC 1 cut(s) 1145
Tsp45I GTSAC 3 cut(s) 60, 828, 1243
XapI RAATTY 2 cut(s) 955, 1088
XceI RCATGY 2 cut(s) 971, 1251
XmnI GAANNNNTTC 1 cut(s) 456
XspI CTAG 4 cut(s) 642, 762, 899, 1197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.