Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000201

Physical Location & Seq

Genomic Coordinates Reverse (-)

23167598 .. 23172321

Gene Structure 4724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44262

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGTCTATGATCACTTATTCACTACATTGCGCATCTTCCTACTTCTTTATCTCCCCTCTTACATTTCCATTGTTTCCATTACTCCAAACCAAACCATCAAAGATGGTGACGTTTTAGTCTCGAGCAGGAAGCTCTTTGCACTAGGGTTCTTCAGCCGTGGAAATTCTGGCAAACGTTACGTTGGAAGAGACAACCCTGTCAATGATTCCTCTGGACTGCTAGTGATCGATGCAGATGGAGGCCTTGGAGTGCATTCTAGTGGAACAGAAATGGCCATGAAAAGATTAAGCAAAAGTTCTGGCCAGGGAAATGAAGAGTTCAAGAATGAAGTTATGCTGATTGTAAAACTTCAACCCAAGAACCTTGTGAGAATCTTAGGCTATTGCGTTCAAGATGAAGAGAAGATGCTAATCTATGAATACCTGCCTAACAAAAGTCTGGACTTGTTTATATTCAATGAAATGAAAAGGACATCTCTGGATTGGACAATACGCTTGGAGATTATCTTTGGCATTGCAAAAGGGATCTTGTTTCTTCATCAAGATTCGAGATTAAGAATCATCCACAGAGACCTAAAGGCCAGCAATATTCTACTGGATTATGATATGAACCTCAAAATTGCAGATTTTGGTGTTTGGGACTTGTGGAAAGAAGGCCGAGCCTTGGAAATCATCGACACATCTTTGGGTGAATCCTACCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

234

Amino Acids

26.65

Weight (kDa)

6.44

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	86 - 215	3.4e-24	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	86 - 220	1.2e-22	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21366
fragaria_vesca	FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica	MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica	Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis	pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis	RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata	RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora	Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa	Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha	Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana	Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	116, 197
Acc16I	TGCGCA	1 cut(s)	32
Acc36I	ACCTGC	1 cut(s)	432
AclI	AACGTT	1 cut(s)	175
AclWI	GGATC	1 cut(s)	533
AcoI	YGGCCR	2 cut(s)	273, 301
AcsI	RAATTY	1 cut(s)	163
AcuI	CTGAAG	1 cut(s)	136
AfiI	CCNNNNNNNGG	1 cut(s)	664
AgsI	TTSAA	4 cut(s)	322, 353, 392, 457
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
Alw26I	GTCTC	3 cut(s)	124, 183, 564
AlwI	GGATC	1 cut(s)	533
Ama87I	CYCGRG	1 cut(s)	121
AoxI	GGCC	5 cut(s)	241, 273, 301, 579, 655
ApoI	RAATTY	1 cut(s)	163
AspLEI	GCGC	1 cut(s)	33
AsuHPI	GGTGA	2 cut(s)	119, 701
AvaI	CYCGRG	1 cut(s)	121
BalI	TGGCCA	2 cut(s)	275, 303
BccI	CCATC	3 cut(s)	98, 104, 230
BceAI	ACGGC	1 cut(s)	141
BciT130I	CCWGG	1 cut(s)	305
BclI	TGATCA	1 cut(s)	10
BcoDI	GTCTC	3 cut(s)	124, 183, 564
BfaI	CTAG	3 cut(s)	143, 221, 258
BfuAI	ACCTGC	1 cut(s)	432
Bme1390I	CCNGG	1 cut(s)	305
BmeT110I	CYCGRG	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	305
BmsI	GCATC	3 cut(s)	42, 220, 396
Bsa29I	ATCGAT	1 cut(s)	228
BsaBI	GATNNNNATC	1 cut(s)	410
BsaI	GGTCTC	1 cut(s)	564
BsaJI	CCNNGG	4 cut(s)	157, 244, 304, 663
Bsc4I	CCNNNNNNNGG	1 cut(s)	664
Bse1I	ACTGG	1 cut(s)	600
Bse3DI	GCAATG	2 cut(s)	26, 513
Bse8I	GATNNNNATC	1 cut(s)	410
BseBI	CCWGG	1 cut(s)	305
BseCI	ATCGAT	1 cut(s)	228
BseDI	CCNNGG	4 cut(s)	157, 244, 304, 663
BseGI	GGATG	1 cut(s)	561
BseJI	GATNNNNATC	1 cut(s)	410
BseLI	CCNNNNNNNGG	1 cut(s)	664
BseMI	GCAATG	2 cut(s)	26, 513
BseNI	ACTGG	1 cut(s)	600
BshFI	GGCC	5 cut(s)	243, 275, 303, 581, 657
BshVI	ATCGAT	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	121
BslFI	GGGAC	1 cut(s)	653
BslI	CCNNNNNNNGG	1 cut(s)	664
BsmAI	GTCTC	3 cut(s)	124, 183, 564
BsmFI	GGGAC	1 cut(s)	653
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	5 cut(s)	243, 275, 303, 581, 657
Bso31I	GGTCTC	1 cut(s)	564
BsoBI	CYCGRG	1 cut(s)	121
Bsp143I	GATC	3 cut(s)	10, 225, 525
BspANI	GGCC	5 cut(s)	243, 275, 303, 581, 657
BspDI	ATCGAT	1 cut(s)	228
BspMI	ACCTGC	1 cut(s)	432
BspPI	GGATC	1 cut(s)	533
BspTNI	GGTCTC	1 cut(s)	564
BsrDI	GCAATG	2 cut(s)	26, 513
BsrI	ACTGG	1 cut(s)	600
BssECI	CCNNGG	4 cut(s)	157, 244, 304, 663
BssMI	GATC	3 cut(s)	10, 225, 525
BssT1I	CCWWGG	2 cut(s)	244, 663
Bst2UI	CCWGG	1 cut(s)	305
Bst6I	CTCTTC	3 cut(s)	181, 309, 393
BstC8I	GCNNGC	1 cut(s)	583
BstDEI	CTNAG	1 cut(s)	376
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	561
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	3 cut(s)	13, 228, 528
BstMAI	GTCTC	3 cut(s)	124, 183, 564
BstMBI	GATC	3 cut(s)	10, 225, 525
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	303
BstX2I	RGATCY	1 cut(s)	525
BstYI	RGATCY	1 cut(s)	525
Bsu15I	ATCGAT	1 cut(s)	228
BsuRI	GGCC	5 cut(s)	243, 275, 303, 581, 657
BsuTUI	ATCGAT	1 cut(s)	228
BtgI	CCRYGG	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	561
BveI	ACCTGC	1 cut(s)	432
Cac8I	GCNNGC	1 cut(s)	583
CfoI	GCGC	1 cut(s)	33
ClaI	ATCGAT	1 cut(s)	228
CviAII	CATG	1 cut(s)	277
CviJI	RGCY	9 cut(s)	133, 156, 243, 275, 303, 381, 581, 657, 662
CviKI_1	RGCY	9 cut(s)	133, 156, 243, 275, 303, 381, 581, 657, 662
DdeI	CTNAG	1 cut(s)	376
DpnI	GATC	3 cut(s)	12, 227, 527
DpnII	GATC	3 cut(s)	10, 225, 525
DrdI	GACNNNNNNGTC	2 cut(s)	116, 197
DseDI	GACNNNNNNGTC	2 cut(s)	116, 197
EaeI	YGGCCR	2 cut(s)	273, 301
Eam1104I	CTCTTC	3 cut(s)	181, 309, 393
EarI	CTCTTC	3 cut(s)	181, 309, 393
Eco130I	CCWWGG	2 cut(s)	244, 663
Eco147I	AGGCCT	1 cut(s)	243
Eco31I	GGTCTC	1 cut(s)	564
Eco57I	CTGAAG	1 cut(s)	136
Eco88I	CYCGRG	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	303
EcoT14I	CCWWGG	2 cut(s)	244, 663
ErhI	CCWWGG	2 cut(s)	244, 663
FaeI	CATG	1 cut(s)	280
FaiI	YATR	8 cut(s)	9, 278, 335, 417, 452, 603, 608, 703
FaqI	GGGAC	1 cut(s)	653
FatI	CATG	1 cut(s)	276
FbaI	TGATCA	1 cut(s)	10
FokI	GGATG	1 cut(s)	548
FspBI	CTAG	3 cut(s)	143, 221, 258
FspI	TGCGCA	1 cut(s)	32
GlaI	GCGC	1 cut(s)	32
HaeIII	GGCC	5 cut(s)	243, 275, 303, 581, 657
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	1 cut(s)	280
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HinfI	GANTC	5 cut(s)	206, 372, 545, 558, 692
HphI	GGTGA	2 cut(s)	119, 701
Hpy188III	TCNNGA	8 cut(s)	121, 213, 322, 392, 440, 479, 542, 549
HpyAV	CCTTC	1 cut(s)	647
HpyCH4IV	ACGT	3 cut(s)	111, 175, 180
HpyCH4V	TGCA	5 cut(s)	140, 233, 253, 518, 623
HpyF3I	CTNAG	1 cut(s)	376
HpySE526I	ACGT	3 cut(s)	111, 175, 180
Hsp92II	CATG	1 cut(s)	280
HspAI	GCGC	1 cut(s)	31
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	10, 225, 525
LweI	GCATC	3 cut(s)	42, 220, 396
MaeI	CTAG	3 cut(s)	143, 221, 258
MaeII	ACGT	3 cut(s)	111, 175, 180
MaeIII	GTNAC	2 cut(s)	107, 176
MalI	GATC	3 cut(s)	12, 227, 527
MboI	GATC	3 cut(s)	10, 225, 525
MboII	GAAGA	7 cut(s)	28, 142, 198, 326, 410, 415, 527
MflI	RGATCY	1 cut(s)	525
MlsI	TGGCCA	2 cut(s)	275, 303
MluCI	AATT	2 cut(s)	163, 618
MluNI	TGGCCA	2 cut(s)	275, 303
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	4 cut(s)	67, 220, 233, 623
Mox20I	TGGCCA	2 cut(s)	275, 303
MscI	TGGCCA	2 cut(s)	275, 303
MseI	TTAA	2 cut(s)	287, 554
MslI	CAYNNNNRTG	1 cut(s)	258
Msp20I	TGGCCA	2 cut(s)	275, 303
MspR9I	CCNGG	1 cut(s)	305
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	305
NdeII	GATC	3 cut(s)	10, 225, 525
NlaIII	CATG	1 cut(s)	280
NmeAIII	GCCGAG	1 cut(s)	683
NmuCI	GTSAC	1 cut(s)	107
NsbI	TGCGCA	1 cut(s)	32
PaeR7I	CTCGAG	1 cut(s)	121
PceI	AGGCCT	1 cut(s)	243
PctI	GAATGC	1 cut(s)	253
PfeI	GAWTC	5 cut(s)	206, 372, 545, 558, 692
Psp1406I	AACGTT	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PsuI	RGATCY	1 cut(s)	525
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	2 cut(s)	287, 554
Sau3AI	GATC	3 cut(s)	10, 225, 525
ScrFI	CCNGG	1 cut(s)	305
SetI	ASST	8 cut(s)	114, 135, 178, 183, 366, 426, 576, 615
SfaNI	GCATC	3 cut(s)	42, 220, 396
Sfr274I	CTCGAG	1 cut(s)	121
SlaI	CTCGAG	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
Sse9I	AATT	2 cut(s)	163, 618
SseBI	AGGCCT	1 cut(s)	243
SspI	AATATT	1 cut(s)	589
SspMI	CTAG	3 cut(s)	143, 221, 258
StuI	AGGCCT	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	303
StyI	CCWWGG	2 cut(s)	244, 663
TaiI	ACGT	3 cut(s)	114, 178, 183
TaqI	TCGA	4 cut(s)	122, 228, 548, 675
TasI	AATT	2 cut(s)	163, 618
TfiI	GAWTC	5 cut(s)	206, 372, 545, 558, 692
Tru1I	TTAA	2 cut(s)	287, 554
Tru9I	TTAA	2 cut(s)	287, 554
TseFI	GTSAC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	9 cut(s)	293, 327, 342, 411, 432, 474, 479, 527, 623
XapI	RAATTY	1 cut(s)	163
XhoI	CTCGAG	1 cut(s)	121
XspI	CTAG	3 cut(s)	143, 221, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.