Prupe.4G142200_v2.0.a1

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000201
Physical Location & Seq
Reverse (-)
8161219 .. 8162191
973 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G142200.1

Sequence Viewer

Length: 705 bp
ATGCTTCAAAATTTTTCAGACCAGGAAAGAGCTAAATTGCTCGACTGGCCTATGTACTTTCACATTATTAATGGAATTGCTCGAGGACTTCTTTATCTTCACCAAGACTCTAGATTAAGGATTATCCATAGAGATCTGAAAGCTAGCAATATTTTGCTTGATGATAATATGAACCCAAAGATTTCTGACTTTGGCCTGGCCAAAATATTTGGTGGCGATCAAAGTCAAGCCAATACTAATAGAGTGGTTGGAACATATGGCTATATGCCTCCTGAATATGCAGTAGATGGAATTTTCTCGACGAAATCAGATGTATTTAGCTTTGGTGTTGTACTGCTAGAGATACTGAGTAGGCAGAGGAACAGGGGATTTTGGCATCCAGATCACCATCTTAACCTTCTTGGACATGCTTGGACACTGTGGATCCAAAATACACCACTGGAACTGATCGATAAGTCGCTAAGCGATTCGTGCACCATATCTGAAGTGTTACGGTGTCTTCATGTGGCTCTGTTATGCGTGCAACAAGTACCTGAAGATAGACCCAGCATGTCATCTGTGGTTCTAATGCTGAGCAGTGAGGTTGCATTGCTTCCACCAAAGCAGCCTGGTTTTTACACCGAACGAACTCTCCCTGATGATCTGTCAAGGGCGCGTGATTTGTCAGAAAATAATTTCAGCACTACATTGTTAAAGGGTCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

235

Amino Acids

26.61

Weight (kDa)

6.23

Isoelectric Point (pI)

47.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 655
AclWI GGATC 2 cut(s) 418, 431
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 2 cut(s) 10, 291
AcuI CTGAAG 2 cut(s) 504, 555
AfaI GTAC 3 cut(s) 56, 333, 531
AgsI TTSAA 1 cut(s) 8
AjnI CCWGG 3 cut(s) 21, 195, 607
AloI GAACNNNNNNTCC 2 cut(s) 615, 647
AluBI AGCT 3 cut(s) 32, 143, 321
AluI AGCT 3 cut(s) 32, 143, 321
Alw21I GWGCWC 1 cut(s) 476
Alw44I GTGCAC 1 cut(s) 472
AlwI GGATC 2 cut(s) 418, 431
Ama87I CYCGRG 1 cut(s) 81
AoxI GGCC 3 cut(s) 47, 193, 198
ApaLI GTGCAC 1 cut(s) 472
ApeKI GCWGC 1 cut(s) 604
ApoI RAATTY 2 cut(s) 10, 291
AseI ATTAAT 1 cut(s) 69
AspLEI GCGC 1 cut(s) 655
AsuHPI GGTGA 2 cut(s) 92, 377
AsuNHI GCTAGC 1 cut(s) 143
AvaI CYCGRG 1 cut(s) 81
BaeGI GKGCMC 1 cut(s) 476
BalI TGGCCA 1 cut(s) 200
BamHI GGATCC 1 cut(s) 423
BbsI GAAGAC 1 cut(s) 491
Bbv12I GWGCWC 1 cut(s) 476
BbvI GCAGC 1 cut(s) 616
BccI CCATC 2 cut(s) 281, 396
BciT130I CCWGG 3 cut(s) 23, 197, 609
BfaI CTAG 3 cut(s) 111, 144, 338
BglII AGATCT 1 cut(s) 133
BisI GCNGC 1 cut(s) 605
BlpI GCTNAGC 2 cut(s) 461, 572
BlsI GCNGC 1 cut(s) 606
Bme1390I CCNGG 3 cut(s) 23, 197, 609
BmeT110I CYCGRG 1 cut(s) 81
BmiI GGNNCC 1 cut(s) 425
BmrFI CCNGG 3 cut(s) 23, 197, 609
BmsI GCATC 1 cut(s) 385
BmtI GCTAGC 1 cut(s) 147
BpiI GAAGAC 1 cut(s) 491
Bpu1102I GCTNAGC 2 cut(s) 461, 572
Bsa29I ATCGAT 1 cut(s) 450
BsaBI GATNNNNATC 1 cut(s) 387
BsaXI ACNNNNNCTCC 2 cut(s) 615, 645
Bse1I ACTGG 2 cut(s) 50, 444
Bse3DI GCAATG 1 cut(s) 587
Bse8I GATNNNNATC 1 cut(s) 387
BseBI CCWGG 3 cut(s) 23, 197, 609
BseCI ATCGAT 1 cut(s) 450
BseGI GGATG 1 cut(s) 376
BseJI GATNNNNATC 1 cut(s) 387
BseMI GCAATG 1 cut(s) 587
BseMII CTCAG 2 cut(s) 338, 563
BseNI ACTGG 2 cut(s) 50, 444
BseSI GKGCMC 1 cut(s) 476
BseXI GCAGC 1 cut(s) 616
BseYI CCCAGC 1 cut(s) 545
Bsh1236I CGCG 1 cut(s) 655
BshFI GGCC 3 cut(s) 49, 195, 200
BshVI ATCGAT 1 cut(s) 450
BsiHKAI GWGCWC 1 cut(s) 476
BsiHKCI CYCGRG 1 cut(s) 81
BsnI GGCC 3 cut(s) 49, 195, 200
BsoBI CYCGRG 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 476
Bsp143I GATC 6 cut(s) 133, 217, 382, 423, 447, 640
Bsp1720I GCTNAGC 2 cut(s) 461, 572
BspANI GGCC 3 cut(s) 49, 195, 200
BspCNI CTCAG 2 cut(s) 339, 564
BspDI ATCGAT 1 cut(s) 450
BspFNI CGCG 1 cut(s) 655
BspLI GGNNCC 1 cut(s) 425
BspOI GCTAGC 1 cut(s) 147
BspPI GGATC 2 cut(s) 418, 431
BsrDI GCAATG 1 cut(s) 587
BsrI ACTGG 2 cut(s) 50, 444
BssMI GATC 6 cut(s) 133, 217, 382, 423, 447, 640
Bst2UI CCWGG 3 cut(s) 23, 197, 609
Bst4CI ACNGT 2 cut(s) 420, 495
BstC8I GCNNGC 2 cut(s) 145, 521
BstDEI CTNAG 3 cut(s) 347, 461, 572
BstF5I GGATG 1 cut(s) 376
BstFNI CGCG 1 cut(s) 655
BstHHI GCGC 1 cut(s) 655
BstKTI GATC 6 cut(s) 136, 220, 385, 426, 450, 643
BstMBI GATC 6 cut(s) 133, 217, 382, 423, 447, 640
BstMWI GCNNNNNNNGC 2 cut(s) 46, 471
BstNI CCWGG 3 cut(s) 23, 197, 609
BstNSI RCATGY 2 cut(s) 410, 553
BstSCI CCNGG 3 cut(s) 21, 195, 607
BstSLI GKGCMC 1 cut(s) 476
BstUI CGCG 1 cut(s) 655
BstV1I GCAGC 1 cut(s) 616
BstV2I GAAGAC 1 cut(s) 491
BstX2I RGATCY 2 cut(s) 133, 423
BstYI RGATCY 2 cut(s) 133, 423
Bsu15I ATCGAT 1 cut(s) 450
BsuRI GGCC 3 cut(s) 49, 195, 200
BsuTUI ATCGAT 1 cut(s) 450
BtsCI GGATG 1 cut(s) 376
BtsI GCAGTG 1 cut(s) 583
BtsIMutI CAGTG 3 cut(s) 416, 437, 583
Cac8I GCNNGC 2 cut(s) 145, 521
CfoI GCGC 1 cut(s) 655
ClaI ATCGAT 1 cut(s) 450
Csp6I GTAC 3 cut(s) 55, 332, 530
CviAII CATG 3 cut(s) 407, 503, 550
CviQI GTAC 3 cut(s) 55, 332, 530
DdeI CTNAG 3 cut(s) 347, 461, 572
DpnI GATC 6 cut(s) 135, 219, 384, 425, 449, 642
DpnII GATC 6 cut(s) 133, 217, 382, 423, 447, 640
EaeI YGGCCR 1 cut(s) 198
Eco57I CTGAAG 2 cut(s) 504, 555
Eco88I CYCGRG 1 cut(s) 81
EcoRII CCWGG 3 cut(s) 21, 195, 607
FaeI CATG 3 cut(s) 410, 506, 553
FatI CATG 3 cut(s) 406, 502, 549
FauNDI CATATG 1 cut(s) 256
Fnu4HI GCNGC 1 cut(s) 605
FokI GGATG 1 cut(s) 363
Fsp4HI GCNGC 1 cut(s) 605
FspBI CTAG 3 cut(s) 111, 144, 338
GlaI GCGC 1 cut(s) 654
GluI GCNGC 1 cut(s) 605
GsaI CCCAGC 1 cut(s) 549
HaeIII GGCC 3 cut(s) 49, 195, 200
HhaI GCGC 1 cut(s) 655
Hin1II CATG 3 cut(s) 410, 506, 553
Hin6I GCGC 1 cut(s) 653
HinP1I GCGC 1 cut(s) 653
HinfI GANTC 2 cut(s) 107, 467
HphI GGTGA 2 cut(s) 92, 377
Hpy166II GTNNAC 1 cut(s) 474
Hpy188I TCNGA 6 cut(s) 19, 138, 187, 310, 484, 667
Hpy188III TCNNGA 4 cut(s) 111, 272, 298, 380
Hpy8I GTNNAC 1 cut(s) 474
Hpy99I CGWCG 1 cut(s) 304
HpyAV CCTTC 1 cut(s) 407
HpyCH4III ACNGT 2 cut(s) 420, 495
HpyCH4V TGCA 4 cut(s) 281, 474, 523, 587
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 471
HpyF3I CTNAG 3 cut(s) 347, 461, 572
Hsp92II CATG 3 cut(s) 410, 506, 553
HspAI GCGC 1 cut(s) 653
Kzo9I GATC 6 cut(s) 133, 217, 382, 423, 447, 640
Lsp1109I GCAGC 1 cut(s) 616
LweI GCATC 1 cut(s) 385
MaeI CTAG 3 cut(s) 111, 144, 338
MaeIII GTNAC 1 cut(s) 489
MalI GATC 6 cut(s) 135, 219, 384, 425, 449, 642
MboI GATC 6 cut(s) 133, 217, 382, 423, 447, 640
MboII GAAGA 3 cut(s) 89, 491, 548
MflI RGATCY 2 cut(s) 133, 423
MhlI GDGCHC 1 cut(s) 476
MlsI TGGCCA 1 cut(s) 200
MluCI AATT 5 cut(s) 10, 35, 75, 291, 673
MluNI TGGCCA 1 cut(s) 200
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 4 cut(s) 77, 279, 351, 574
Mox20I TGGCCA 1 cut(s) 200
MscI TGGCCA 1 cut(s) 200
MseI TTAA 4 cut(s) 69, 116, 393, 692
Msp20I TGGCCA 1 cut(s) 200
MspR9I CCNGG 3 cut(s) 23, 197, 609
MvaI CCWGG 3 cut(s) 23, 197, 609
MvnI CGCG 1 cut(s) 655
MwoI GCNNNNNNNGC 2 cut(s) 46, 471
NdeI CATATG 1 cut(s) 256
NdeII GATC 6 cut(s) 133, 217, 382, 423, 447, 640
NheI GCTAGC 1 cut(s) 143
NlaIII CATG 3 cut(s) 410, 506, 553
NlaIV GGNNCC 1 cut(s) 425
NspI RCATGY 2 cut(s) 410, 553
PaeR7I CTCGAG 1 cut(s) 81
PfeI GAWTC 1 cut(s) 467
PkrI GCNGC 1 cut(s) 606
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
PshBI ATTAAT 1 cut(s) 69
Psp6I CCWGG 3 cut(s) 21, 195, 607
PspFI CCCAGC 1 cut(s) 545
PspGI CCWGG 3 cut(s) 21, 195, 607
PspN4I GGNNCC 1 cut(s) 425
PspXI VCTCGAGB 1 cut(s) 81
PsuI RGATCY 2 cut(s) 133, 423
RsaI GTAC 3 cut(s) 56, 333, 531
RsaNI GTAC 3 cut(s) 55, 332, 530
SaqAI TTAA 4 cut(s) 69, 116, 393, 692
SatI GCNGC 1 cut(s) 605
Sau3AI GATC 6 cut(s) 133, 217, 382, 423, 447, 640
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 3 cut(s) 23, 197, 609
SduI GDGCHC 1 cut(s) 476
SetI ASST 6 cut(s) 34, 145, 323, 399, 535, 585
SfaNI GCATC 1 cut(s) 385
Sfr274I CTCGAG 1 cut(s) 81
SlaI CTCGAG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 81
SmoI CTYRAG 1 cut(s) 81
Sse9I AATT 5 cut(s) 10, 35, 75, 291, 673
SspI AATATT 2 cut(s) 151, 207
SspMI CTAG 3 cut(s) 111, 144, 338
StyD4I CCNGG 3 cut(s) 21, 195, 607
TaaI ACNGT 2 cut(s) 420, 495
TaqI TCGA 4 cut(s) 42, 82, 299, 450
TasI AATT 5 cut(s) 10, 35, 75, 291, 673
TatI WGTACW 2 cut(s) 54, 331
TfiI GAWTC 1 cut(s) 467
Tru1I TTAA 4 cut(s) 69, 116, 393, 692
Tru9I TTAA 4 cut(s) 69, 116, 393, 692
TscAI CASTG 3 cut(s) 423, 444, 583
TseI GCWGC 1 cut(s) 604
TspDTI ATGAA 2 cut(s) 185, 491
TspRI CASTG 3 cut(s) 423, 444, 583
VneI GTGCAC 1 cut(s) 472
VspI ATTAAT 1 cut(s) 69
XapI RAATTY 2 cut(s) 10, 291
XbaI TCTAGA 1 cut(s) 110
XceI RCATGY 2 cut(s) 410, 553
XhoI CTCGAG 1 cut(s) 81
XspI CTAG 3 cut(s) 111, 144, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.