Rh5CG284100

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000201
Physical Location & Seq
Reverse (-)
31102812 .. 31113526
10715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG284100.1

Sequence Viewer

Length: 888 bp
ATGGCCACTCTTTCTTTCACCTTCATTGGAATTTACATGTCCCTTTCTTTCTTCAACACTTCAACTGCAGCAGCCGCTGGTAGCACCTTGGTTTTTAAAAATGGCAGCTTTGAGTTGGGTTCTGTGACTTCTGTCAGTCCTCAAGATGCTATTTTTCAGAGGAGTCTTTTAGCATCAACTCCTCCAGGAGATATATGTGACACTGATGGCCGATGTGGCCCGAACGGACTGTGTGACATTAGTGACTCACAAGTTTGCAGTTGCTTAGAGGGATTCAAGCCCAAAAAAGAAGAGAACTGGAGCTTTGGGGAAAACTCGGATGGTTGTGTGCGTGTTACTCCATTGATGTGCCAAAGTAAGGATGATGGGTTTGTGAAATATGCCGGGGTCAAAGTGCCGGCGAGCATAGACTCTAGGGTGAACCAGAGTACGAGTCTCGAGGAATGCAAGGAAAATTGCTTTAACAACTGCTCTTGTATGGCTTACGCAAGCTCTGATGTCAATGGCTGCACCGTCTGGTTTGGTGATCTTTTCAACCTTAGAAAGCTTCCACATGGAGGGCAGGATCTGTATGTTCGAGTGCCTACTTCCGAATTGAAGCTTCCTGAAGATAGGCCGACCATGTCGTCGGTGGTTCTGATGCTAGGTGGTGAGAGTGCCTTGCCTCAACCCAAAAGGCCAGGTTTATATCAACATACGTCCATTGAAGAACCATGGATCCCCATGCAAGACCTTGTTACACTCATCTCGACGTCGAAACCAGAAAAGAAAATGACCCTCCAGCAAGTCCGAAATGGCAACCTATCCCCAAGACCCCAGATTGCCGCCAACGTCCCCAGAACACCCTTCTCATCTCTCTTCTTCGACTGGACTAACCTTCCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

295

Amino Acids

32.19

Weight (kDa)

5.18

Isoelectric Point (pI)

52.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 60 - 95 9.1e-09 S-locus glycoprotein domain
PAN_2 PF08276 117 - 179 6.6e-18 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 625
AatII GACGTC 1 cut(s) 755
AciI CCGC 2 cut(s) 75, 825
AclWI GGATC 3 cut(s) 573, 712, 725
AcoI YGGCCR 2 cut(s) 3, 208
AcsI RAATTY 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 627
AcyI GRCGYC 1 cut(s) 752
AfaI GTAC 1 cut(s) 430
AfiI CCNNNNNNNGG 2 cut(s) 358, 557
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 6 cut(s) 55, 63, 277, 535, 598, 707
AjnI CCWGG 2 cut(s) 184, 679
AloI GAACNNNNNNTCC 2 cut(s) 702, 734
AluBI AGCT 5 cut(s) 108, 303, 492, 547, 601
AluI AGCT 5 cut(s) 108, 303, 492, 547, 601
Alw26I GTCTC 1 cut(s) 440
AlwI GGATC 3 cut(s) 573, 712, 725
AlwNI CAGNNNCTG 2 cut(s) 77, 568
Ama87I CYCGRG 1 cut(s) 437
AoxI GGCC 5 cut(s) 3, 208, 217, 614, 677
ApeKI GCWGC 4 cut(s) 68, 71, 105, 507
ApoI RAATTY 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 218
AsuC2I CCSGG 1 cut(s) 385
AsuHPI GGTGA 4 cut(s) 10, 430, 536, 662
AvaI CYCGRG 1 cut(s) 437
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 717
BbvI GCAGC 4 cut(s) 80, 83, 117, 494
BccI CCATC 3 cut(s) 200, 314, 359
BciT130I CCWGG 2 cut(s) 186, 681
BcnI CCSGG 1 cut(s) 385
BcoDI GTCTC 1 cut(s) 440
BfaI CTAG 3 cut(s) 414, 644, 886
BfmI CTRYAG 1 cut(s) 66
BglI GCCNNNNNGGC 1 cut(s) 216
BisI GCNGC 6 cut(s) 69, 72, 75, 106, 508, 825
BlsI GCNGC 6 cut(s) 70, 73, 76, 107, 509, 826
Bme1390I CCNGG 3 cut(s) 186, 385, 681
BmeT110I CYCGRG 1 cut(s) 437
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 719
BmrFI CCNGG 3 cut(s) 186, 385, 681
BmsI GCATC 3 cut(s) 136, 182, 630
BoxI GACNNNNGTC 1 cut(s) 131
BpmI CTGGAG 3 cut(s) 168, 319, 764
BpuEI CTTGAG 1 cut(s) 126
BpuMI CCSGG 1 cut(s) 385
BsaHI GRCGYC 1 cut(s) 752
BsaJI CCNNGG 3 cut(s) 87, 384, 713
Bsc4I CCNNNNNNNGG 2 cut(s) 358, 557
Bse118I RCCGGY 1 cut(s) 397
Bse1I ACTGG 2 cut(s) 302, 872
BseBI CCWGG 2 cut(s) 186, 681
BseDI CCNNGG 3 cut(s) 87, 384, 713
BseGI GGATG 2 cut(s) 325, 367
BseLI CCNNNNNNNGG 2 cut(s) 358, 557
BseNI ACTGG 2 cut(s) 302, 872
BseRI GAGGAG 2 cut(s) 171, 175
BseXI GCAGC 4 cut(s) 80, 83, 117, 494
BsgI GTGCAG 1 cut(s) 493
BshFI GGCC 5 cut(s) 5, 210, 219, 616, 679
BsiHKCI CYCGRG 1 cut(s) 437
BsiSI CCGG 2 cut(s) 384, 398
BslFI GGGAC 2 cut(s) 25, 818
BslI CCNNNNNNNGG 2 cut(s) 358, 557
BsmAI GTCTC 1 cut(s) 440
BsmFI GGGAC 2 cut(s) 25, 818
BsmI GAATGC 1 cut(s) 449
BsnI GGCC 5 cut(s) 5, 210, 219, 616, 679
BsoBI CYCGRG 1 cut(s) 437
Bsp143I GATC 3 cut(s) 526, 565, 717
Bsp19I CCATGG 1 cut(s) 713
BspACI CCGC 2 cut(s) 75, 825
BspANI GGCC 5 cut(s) 5, 210, 219, 616, 679
BspLI GGNNCC 1 cut(s) 719
BspMAI CTGCAG 1 cut(s) 70
BspPI GGATC 3 cut(s) 573, 712, 725
BsrFI RCCGGY 1 cut(s) 397
BsrI ACTGG 2 cut(s) 302, 872
BssAI RCCGGY 1 cut(s) 397
BssECI CCNNGG 3 cut(s) 87, 384, 713
BssMI GATC 3 cut(s) 526, 565, 717
BssNI GRCGYC 1 cut(s) 752
BssT1I CCWWGG 2 cut(s) 87, 713
Bst2UI CCWGG 2 cut(s) 186, 681
Bst4CI ACNGT 2 cut(s) 231, 514
Bst6I CTCTTC 2 cut(s) 285, 863
BstACI GRCGYC 1 cut(s) 752
BstC8I GCNNGC 3 cut(s) 399, 403, 490
BstDEI CTNAG 2 cut(s) 265, 539
BstDSI CCRYGG 1 cut(s) 713
BstF5I GGATG 2 cut(s) 325, 367
BstKTI GATC 3 cut(s) 529, 568, 720
BstMAI GTCTC 1 cut(s) 440
BstMBI GATC 3 cut(s) 526, 565, 717
BstMWI GCNNNNNNNGC 2 cut(s) 74, 216
BstNI CCWGG 2 cut(s) 186, 681
BstNSI RCATGY 1 cut(s) 40
BstPAI GACNNNNGTC 1 cut(s) 131
BstSCI CCNGG 3 cut(s) 184, 383, 679
BstSFI CTRYAG 1 cut(s) 66
BstV1I GCAGC 4 cut(s) 80, 83, 117, 494
BstX2I RGATCY 2 cut(s) 565, 717
BstYI RGATCY 2 cut(s) 565, 717
BsuRI GGCC 5 cut(s) 5, 210, 219, 616, 679
BtgI CCRYGG 1 cut(s) 713
BtsCI GGATG 2 cut(s) 325, 367
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 3 cut(s) 399, 403, 490
CaiI CAGNNNCTG 2 cut(s) 77, 568
Cfr10I RCCGGY 1 cut(s) 397
Cfr13I GGNCC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 429
CviAII CATG 5 cut(s) 37, 554, 622, 714, 724
CviQI GTAC 1 cut(s) 429
DdeI CTNAG 2 cut(s) 265, 539
DpnI GATC 3 cut(s) 528, 567, 719
DpnII GATC 3 cut(s) 526, 565, 717
DraI TTTAAA 1 cut(s) 97
DrdI GACNNNNNNGTC 1 cut(s) 625
DseDI GACNNNNNNGTC 1 cut(s) 625
EaeI YGGCCR 2 cut(s) 3, 208
Eam1104I CTCTTC 2 cut(s) 285, 863
EarI CTCTTC 2 cut(s) 285, 863
Eco130I CCWWGG 2 cut(s) 87, 713
Eco57I CTGAAG 1 cut(s) 627
Eco88I CYCGRG 1 cut(s) 437
EcoRII CCWGG 2 cut(s) 184, 679
EcoT14I CCWWGG 2 cut(s) 87, 713
ErhI CCWWGG 2 cut(s) 87, 713
FaeI CATG 5 cut(s) 40, 557, 625, 717, 727
FaqI GGGAC 2 cut(s) 25, 818
FatI CATG 5 cut(s) 36, 553, 621, 713, 723
Fnu4HI GCNGC 6 cut(s) 69, 72, 75, 106, 508, 825
FokI GGATG 2 cut(s) 332, 374
Fsp4HI GCNGC 6 cut(s) 69, 72, 75, 106, 508, 825
FspBI CTAG 3 cut(s) 414, 644, 886
GluI GCNGC 6 cut(s) 69, 72, 75, 106, 508, 825
GsuI CTGGAG 3 cut(s) 168, 319, 764
HaeIII GGCC 5 cut(s) 5, 210, 219, 616, 679
HapII CCGG 2 cut(s) 384, 398
Hin1I GRCGYC 1 cut(s) 752
Hin1II CATG 5 cut(s) 40, 557, 625, 717, 727
HindIII AAGCTT 2 cut(s) 545, 599
HinfI GANTC 5 cut(s) 163, 245, 273, 410, 433
HpaII CCGG 2 cut(s) 384, 398
HphI GGTGA 4 cut(s) 10, 430, 536, 662
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 6 cut(s) 159, 319, 496, 592, 639, 791
Hpy188III TCNNGA 4 cut(s) 143, 437, 605, 748
Hpy8I GTNNAC 1 cut(s) 421
Hpy99I CGWCG 3 cut(s) 631, 754, 757
HpyAV CCTTC 3 cut(s) 31, 856, 887
HpyCH4III ACNGT 2 cut(s) 231, 514
HpyCH4IV ACGT 3 cut(s) 698, 752, 831
HpyCH4V TGCA 5 cut(s) 68, 258, 447, 510, 727
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 216
HpyF3I CTNAG 2 cut(s) 265, 539
HpySE526I ACGT 3 cut(s) 698, 752, 831
Hsp92I GRCGYC 1 cut(s) 752
Hsp92II CATG 5 cut(s) 40, 557, 625, 717, 727
KroI GCCGGC 1 cut(s) 397
KroNI GCCGGC 1 cut(s) 399
Kzo9I GATC 3 cut(s) 526, 565, 717
LmnI GCTCC 1 cut(s) 300
Lsp1109I GCAGC 4 cut(s) 80, 83, 117, 494
LweI GCATC 3 cut(s) 136, 182, 630
MaeI CTAG 3 cut(s) 414, 644, 886
MaeII ACGT 3 cut(s) 698, 752, 831
MaeIII GTNAC 6 cut(s) 124, 197, 233, 242, 334, 736
MalI GATC 3 cut(s) 528, 567, 719
MboI GATC 3 cut(s) 526, 565, 717
MboII GAAGA 6 cut(s) 43, 302, 620, 719, 850, 853
MflI RGATCY 2 cut(s) 565, 717
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 30, 454, 593
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 4 cut(s) 172, 239, 404, 442
MnlI CCTC 8 cut(s) 150, 153, 192, 262, 433, 551, 675, 788
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 397
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 96, 462
MslI CAYNNNNRTG 1 cut(s) 346
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 2 cut(s) 384, 398
MspR9I CCNGG 3 cut(s) 186, 385, 681
Mva1269I GAATGC 1 cut(s) 449
MvaI CCWGG 2 cut(s) 186, 681
MwoI GCNNNNNNNGC 2 cut(s) 74, 216
NaeI GCCGGC 1 cut(s) 399
NciI CCSGG 1 cut(s) 385
NcoI CCATGG 1 cut(s) 713
NdeII GATC 3 cut(s) 526, 565, 717
NgoMIV GCCGGC 1 cut(s) 397
NlaIII CATG 5 cut(s) 40, 557, 625, 717, 727
NlaIV GGNNCC 1 cut(s) 719
NmuCI GTSAC 4 cut(s) 124, 197, 233, 242
NspI RCATGY 1 cut(s) 40
PaeR7I CTCGAG 1 cut(s) 437
PciI ACATGT 1 cut(s) 36
PctI GAATGC 1 cut(s) 449
PdiI GCCGGC 1 cut(s) 399
PfeI GAWTC 1 cut(s) 273
PflFI GACNNNGTC 1 cut(s) 622
PfoI TCCNGGA 1 cut(s) 184
PkrI GCNGC 6 cut(s) 70, 73, 76, 107, 509, 826
PleI GAGTC 4 cut(s) 171, 239, 404, 441
PpsI GAGTC 4 cut(s) 171, 239, 404, 441
PscI ACATGT 1 cut(s) 36
PshAI GACNNNNGTC 1 cut(s) 131
Psp6I CCWGG 2 cut(s) 184, 679
PspGI CCWGG 2 cut(s) 184, 679
PspN4I GGNNCC 1 cut(s) 719
PspPI GGNCC 1 cut(s) 218
PstI CTGCAG 1 cut(s) 70
PstNI CAGNNNCTG 2 cut(s) 77, 568
PsuI RGATCY 2 cut(s) 565, 717
PsyI GACNNNGTC 1 cut(s) 622
RsaI GTAC 1 cut(s) 430
RsaNI GTAC 1 cut(s) 429
RseI CAYNNNNRTG 1 cut(s) 346
SaqAI TTAA 2 cut(s) 96, 462
SatI GCNGC 6 cut(s) 69, 72, 75, 106, 508, 825
Sau3AI GATC 3 cut(s) 526, 565, 717
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 4 cut(s) 172, 239, 404, 442
ScrFI CCNGG 3 cut(s) 186, 385, 681
SfaNI GCATC 3 cut(s) 136, 182, 630
SfcI CTRYAG 1 cut(s) 66
SfiI GGCCNNNNNGGCC 1 cut(s) 216
Sfr274I CTCGAG 1 cut(s) 437
SlaI CTCGAG 1 cut(s) 437
SmiMI CAYNNNNRTG 1 cut(s) 346
SmlI CTYRAG 2 cut(s) 141, 437
SmoI CTYRAG 2 cut(s) 141, 437
Sse9I AATT 3 cut(s) 30, 454, 593
SsiI CCGC 2 cut(s) 75, 825
SspMI CTAG 3 cut(s) 414, 644, 886
StyD4I CCNGG 3 cut(s) 184, 383, 679
StyI CCWWGG 2 cut(s) 87, 713
TaaI ACNGT 2 cut(s) 231, 514
TaiI ACGT 3 cut(s) 701, 755, 834
TaqI TCGA 5 cut(s) 438, 577, 749, 755, 864
TasI AATT 3 cut(s) 30, 454, 593
TauI GCSGC 2 cut(s) 77, 827
TfiI GAWTC 1 cut(s) 273
Tru1I TTAA 2 cut(s) 96, 462
Tru9I TTAA 2 cut(s) 96, 462
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 4 cut(s) 124, 197, 233, 242
TseI GCWGC 4 cut(s) 68, 71, 105, 507
Tsp45I GTSAC 4 cut(s) 124, 197, 233, 242
TspDTI ATGAA 1 cut(s) 13
TspGWI ACGGA 1 cut(s) 240
TspRI CASTG 1 cut(s) 208
Tth111I GACNNNGTC 1 cut(s) 622
XapI RAATTY 1 cut(s) 30
XceI RCATGY 1 cut(s) 40
XcmI CCANNNNNNNNNTGG 1 cut(s) 628
XhoI CTCGAG 1 cut(s) 437
XspI CTAG 3 cut(s) 414, 644, 886
ZraI GACGTC 1 cut(s) 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.