Rroxscaffold_1G00052940

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000201
Physical Location & Seq
Forward (+)
73669422 .. 73670277
856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00052940.1

Sequence Viewer

Length: 678 bp
ATGTCACTAGACTGGCGTAAGCGGTTTGACATTATTAATGGCATTGCTCGAGGGCTCCTCTATCTTCATCAAGACTCCAGACTCAGAGTAATTCATCGAGATCTCAAAGCAGGAAATATTTTATTAGACAGTGAATTTATCCCAAAAATATCTGAATTTGGCCTGGCTAGAAGTTTGGGAGGAAATGAAACTAAAGCAGAAACGAACAGAGTGGTTGGCACTGGTTATATGTCTCCAGAATATGCAATTGATGGGTTCTACTCTACCAAATCCGACGTCTTTAGCTTTGGTGTTTCTGTGTTGGAGATAATAAGTGGGAAGAGAAACAGAGGATTCTATAATCCAGATCACAGCCTAAACCTCCTTGGACATGCATGGAAGCTATACACACAAGGCAGGTCCATTGAACTGCTTGATACATCAGTACGGGACTCGACTAATGTACTAAAGGACGTTCTTCGATCGGTTCATGTGGGACTCTTATGTGTGCAGCAAAATCCAGAGGATAGGCCAAGCATGTCAGCTGCCGTTCTAATGTTGAGTGGTGAAGGTGCATCGCCTCAACCCCAGAAACCAGGCTTTTATACTGAAAGGAATCTGAGTGAGATCAAAGTCGACGCCGCTCCTAAAACATGTTCAGCTAATGAAGTCACTTTTACACTATTGGAGGCCCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

225

Amino Acids

25.02

Weight (kDa)

7.79

Isoelectric Point (pI)

49.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 3 - 176 1.4e-24 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 10 - 176 4.3e-22 Protein kinase domain
DUF3403 PF11883 187 - 225 3e-07 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 279
Acc36I ACCTGC 1 cut(s) 387
AccBSI CCGCTC 1 cut(s) 623
AccI GTMKAC 1 cut(s) 615
AciI CCGC 2 cut(s) 22, 621
AcsI RAATTY 2 cut(s) 134, 155
AcyI GRCGYC 2 cut(s) 276, 618
AfaI GTAC 2 cut(s) 426, 444
AflIII ACRYGT 1 cut(s) 632
AgsI TTSAA 1 cut(s) 407
AjnI CCWGG 2 cut(s) 162, 574
AluBI AGCT 4 cut(s) 285, 382, 524, 641
AluI AGCT 4 cut(s) 285, 382, 524, 641
Alw26I GTCTC 1 cut(s) 237
Ama87I CYCGRG 1 cut(s) 48
AoxI GGCC 3 cut(s) 160, 509, 669
ApeKI GCWGC 2 cut(s) 490, 524
ApoI RAATTY 2 cut(s) 134, 155
ArsI GACNNNNNNTTYG 2 cut(s) 261, 293
AseI ATTAAT 1 cut(s) 36
AspS9I GGNCC 2 cut(s) 399, 670
AsuHPI GGTGA 1 cut(s) 557
AvaI CYCGRG 1 cut(s) 48
AvaII GGWCC 1 cut(s) 399
BaeI ACNNNNGTAYC 2 cut(s) 408, 441
BanII GRGCYC 1 cut(s) 57
BbvI GCAGC 2 cut(s) 502, 511
BccI CCATC 1 cut(s) 245
BceAI ACGGC 1 cut(s) 512
BciT130I CCWGG 2 cut(s) 164, 576
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 2 cut(s) 8, 168
BfuAI ACCTGC 1 cut(s) 387
BglII AGATCT 1 cut(s) 100
BisI GCNGC 3 cut(s) 491, 525, 621
BlsI GCNGC 3 cut(s) 492, 526, 622
Bme1390I CCNGG 2 cut(s) 164, 576
Bme18I GGWCC 1 cut(s) 399
BmeT110I CYCGRG 1 cut(s) 48
BmgT120I GGNCC 2 cut(s) 399, 670
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 2 cut(s) 164, 576
BmsI GCATC 1 cut(s) 563
BplI GAGNNNNNCTC 2 cut(s) 42, 74
BpmI CTGGAG 2 cut(s) 61, 219
BsaHI GRCGYC 2 cut(s) 276, 618
BsaJI CCNNGG 1 cut(s) 364
Bse1I ACTGG 2 cut(s) 17, 226
Bse3DI GCAATG 1 cut(s) 42
BseBI CCWGG 2 cut(s) 164, 576
BseDI CCNNGG 1 cut(s) 364
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 2 cut(s) 97, 590
BseNI ACTGG 2 cut(s) 17, 226
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 2 cut(s) 502, 511
BsgI GTGCAG 1 cut(s) 509
Bsh1285I CGRYCG 1 cut(s) 464
BshFI GGCC 3 cut(s) 162, 511, 671
BsiEI CGRYCG 1 cut(s) 464
BsiHKCI CYCGRG 1 cut(s) 48
BslFI GGGAC 2 cut(s) 443, 489
BsmAI GTCTC 1 cut(s) 237
BsmFI GGGAC 2 cut(s) 443, 489
BsnI GGCC 3 cut(s) 162, 511, 671
BsoBI CYCGRG 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 4 cut(s) 100, 346, 461, 606
BspACI CCGC 2 cut(s) 22, 621
BspANI GGCC 3 cut(s) 162, 511, 671
BspCNI CTCAG 2 cut(s) 96, 591
BspLI GGNNCC 1 cut(s) 56
BspMI ACCTGC 1 cut(s) 387
BsrBI CCGCTC 1 cut(s) 623
BsrDI GCAATG 1 cut(s) 42
BsrI ACTGG 2 cut(s) 17, 226
BssECI CCNNGG 1 cut(s) 364
BssMI GATC 4 cut(s) 100, 346, 461, 606
BssNI GRCGYC 2 cut(s) 276, 618
BssT1I CCWWGG 1 cut(s) 364
Bst2UI CCWGG 2 cut(s) 164, 576
Bst4CI ACNGT 1 cut(s) 131
Bst6I CTCTTC 1 cut(s) 314
BstACI GRCGYC 2 cut(s) 276, 618
BstDEI CTNAG 2 cut(s) 83, 599
BstKTI GATC 4 cut(s) 103, 349, 464, 609
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 4 cut(s) 100, 346, 461, 606
BstMCI CGRYCG 1 cut(s) 464
BstNI CCWGG 2 cut(s) 164, 576
BstNSI RCATGY 3 cut(s) 374, 520, 636
BstSCI CCNGG 2 cut(s) 162, 574
BstV1I GCAGC 2 cut(s) 502, 511
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 3 cut(s) 162, 511, 671
BtgZI GCGATG 1 cut(s) 540
BtsIMutI CAGTG 2 cut(s) 136, 219
BveI ACCTGC 1 cut(s) 387
Cfr13I GGNCC 2 cut(s) 399, 670
CseI GACGC 1 cut(s) 626
Csp6I GTAC 2 cut(s) 425, 443
CviAII CATG 5 cut(s) 371, 375, 470, 517, 633
CviQI GTAC 2 cut(s) 425, 443
DdeI CTNAG 2 cut(s) 83, 599
DpnI GATC 4 cut(s) 102, 348, 463, 608
DpnII GATC 4 cut(s) 100, 346, 461, 606
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
Eco130I CCWWGG 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 399
Eco88I CYCGRG 1 cut(s) 48
EcoRII CCWGG 2 cut(s) 162, 574
EcoT14I CCWWGG 1 cut(s) 364
EcoT22I ATGCAT 1 cut(s) 376
EcoT38I GRGCYC 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 364
FaeI CATG 5 cut(s) 374, 378, 473, 520, 636
FaqI GGGAC 2 cut(s) 443, 489
FatI CATG 5 cut(s) 370, 374, 469, 516, 632
FblI GTMKAC 1 cut(s) 615
Fnu4HI GCNGC 3 cut(s) 491, 525, 621
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 3 cut(s) 491, 525, 621
FspBI CTAG 2 cut(s) 8, 168
GluI GCNGC 3 cut(s) 491, 525, 621
GsuI CTGGAG 2 cut(s) 61, 219
HaeIII GGCC 3 cut(s) 162, 511, 671
HgaI GACGC 1 cut(s) 626
Hin1I GRCGYC 2 cut(s) 276, 618
Hin1II CATG 5 cut(s) 374, 378, 473, 520, 636
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HinfI GANTC 6 cut(s) 74, 81, 333, 431, 477, 595
HphI GGTGA 1 cut(s) 557
Hpy166II GTNNAC 1 cut(s) 616
Hpy188I TCNGA 4 cut(s) 86, 154, 274, 600
Hpy188III TCNNGA 6 cut(s) 71, 78, 98, 236, 344, 500
Hpy8I GTNNAC 1 cut(s) 616
Hpy99I CGWCG 2 cut(s) 278, 620
HpyAV CCTTC 1 cut(s) 542
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 2 cut(s) 276, 453
HpyCH4V TGCA 4 cut(s) 245, 374, 490, 554
HpyF3I CTNAG 2 cut(s) 83, 599
HpySE526I ACGT 2 cut(s) 276, 453
Hsp92I GRCGYC 2 cut(s) 276, 618
Hsp92II CATG 5 cut(s) 374, 378, 473, 520, 636
Kzo9I GATC 4 cut(s) 100, 346, 461, 606
LmnI GCTCC 2 cut(s) 60, 628
Lsp1109I GCAGC 2 cut(s) 502, 511
LweI GCATC 1 cut(s) 563
MaeI CTAG 2 cut(s) 8, 168
MaeII ACGT 2 cut(s) 276, 453
MaeIII GTNAC 2 cut(s) 3, 649
MalI GATC 4 cut(s) 102, 348, 463, 608
MbiI CCGCTC 1 cut(s) 623
MboI GATC 4 cut(s) 100, 346, 461, 606
MboII GAAGA 3 cut(s) 56, 331, 449
MfeI CAATTG 1 cut(s) 246
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 4 cut(s) 90, 134, 155, 246
MlyI GAGTC 4 cut(s) 68, 75, 425, 471
MmeI TCCRAC 2 cut(s) 282, 297
MnlI CCTC 8 cut(s) 44, 68, 173, 323, 371, 496, 570, 661
Mph1103I ATGCAT 1 cut(s) 376
MseI TTAA 1 cut(s) 36
MspA1I CMGCKG 1 cut(s) 524
MspR9I CCNGG 2 cut(s) 164, 576
MunI CAATTG 1 cut(s) 246
MvaI CCWGG 2 cut(s) 164, 576
NdeII GATC 4 cut(s) 100, 346, 461, 606
NlaIII CATG 5 cut(s) 374, 378, 473, 520, 636
NlaIV GGNNCC 1 cut(s) 56
NmuCI GTSAC 2 cut(s) 3, 649
NsiI ATGCAT 1 cut(s) 376
NspI RCATGY 3 cut(s) 374, 520, 636
PaeR7I CTCGAG 1 cut(s) 48
PciI ACATGT 1 cut(s) 632
PfeI GAWTC 2 cut(s) 333, 595
PkrI GCNGC 3 cut(s) 492, 526, 622
Ple19I CGATCG 1 cut(s) 464
PleI GAGTC 4 cut(s) 68, 75, 425, 471
PpsI GAGTC 4 cut(s) 68, 75, 425, 471
PscI ACATGT 1 cut(s) 632
PshBI ATTAAT 1 cut(s) 36
Psp6I CCWGG 2 cut(s) 162, 574
PspGI CCWGG 2 cut(s) 162, 574
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 2 cut(s) 399, 670
PspXI VCTCGAGB 1 cut(s) 48
PsuI RGATCY 1 cut(s) 100
PvuI CGATCG 1 cut(s) 464
PvuII CAGCTG 1 cut(s) 524
RsaI GTAC 2 cut(s) 426, 444
RsaNI GTAC 2 cut(s) 425, 443
SalI GTCGAC 1 cut(s) 614
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 3 cut(s) 491, 525, 621
Sau3AI GATC 4 cut(s) 100, 346, 461, 606
Sau96I GGNCC 2 cut(s) 399, 670
SchI GAGTC 4 cut(s) 68, 75, 425, 471
ScrFI CCNGG 2 cut(s) 164, 576
SduI GDGCHC 1 cut(s) 57
SetI ASST 9 cut(s) 279, 287, 363, 384, 401, 456, 526, 553, 643
SfaNI GCATC 1 cut(s) 563
Sfr274I CTCGAG 1 cut(s) 48
SinI GGWCC 1 cut(s) 399
SlaI CTCGAG 1 cut(s) 48
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
Sse9I AATT 4 cut(s) 90, 134, 155, 246
SsiI CCGC 2 cut(s) 22, 621
SspI AATATT 1 cut(s) 118
SspMI CTAG 2 cut(s) 8, 168
StyD4I CCNGG 2 cut(s) 162, 574
StyI CCWWGG 1 cut(s) 364
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 2 cut(s) 279, 456
TaqI TCGA 5 cut(s) 49, 97, 434, 460, 615
TasI AATT 4 cut(s) 90, 134, 155, 246
TatI WGTACW 1 cut(s) 442
TauI GCSGC 1 cut(s) 623
TfiI GAWTC 2 cut(s) 333, 595
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 2 cut(s) 136, 226
TseFI GTSAC 2 cut(s) 3, 649
TseI GCWGC 2 cut(s) 490, 524
Tsp45I GTSAC 2 cut(s) 3, 649
TspDTI ATGAA 5 cut(s) 56, 83, 201, 458, 660
TspRI CASTG 2 cut(s) 136, 226
VpaK11BI GGWCC 1 cut(s) 399
VspI ATTAAT 1 cut(s) 36
XapI RAATTY 2 cut(s) 134, 155
XceI RCATGY 3 cut(s) 374, 520, 636
XhoI CTCGAG 1 cut(s) 48
XmiI GTMKAC 1 cut(s) 615
XspI CTAG 2 cut(s) 8, 168
ZraI GACGTC 1 cut(s) 277
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.