RchiOBHm_Chr4g0411701

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
35593744 .. 35595298
1555 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38246

Sequence Viewer

Length: 1044 bp
ATGGAACCTGCTGAAAGTAGCATAAGCTCAGATTTGCCATTCTTTGACCTAACAACCATAGCAGCAGCCACAGACAACTTCTCTCTTGCAAACAAGCTTGGAACAGGCGGTTTTGGCTCCGTCTATAAGGGTGTACTTTTTAATGGAAAGGAAATAGCAGTGAAAAGATTATCGAAGACCTCGGGTCAAGGAATTGAAGAGTTTAAAAATGAGGTTTTGTTGATTGCGAAACTCCAACATCGCAACCTTGTGAGGATATTAGGTTGTTGCGTTCAAGATGAAGAGAAGATGCTAATCTATGAGTACTTACCAAACAAAGGCCTCGACTTTTTTATTTTTAACGAAACCAACAAAGCACTTTTAGATTGGACAAAACGCTTTGAGATTATCCATGGAATCACTAGAGGAATTATATATCTTCACCAAGATTCAAGATTAAGAATTATCCACCGAGATCTAAAGGCCAGCAATGTTCTACTAGATGCTTCTATGAACCCCAAAATTGCAGATTTTGGTATGGCTAGAATTTTTAAGGGAGATCAAAATGAAGCAAATACAAAGCGTGTGGTTGGAACATATGGTTATATGTCACCAGAGTATGCAATGCAAGGAAGGTTTTCGGTGAAGTCAGATGTATATAGCTATGGCGTTTTACTAATAGAAATCATTACCGGAAGAAAGAATAATGGCTTTTACCATGAGGAACATCCTTACTCAAATTTAGTTGGGCATGTTTGGAACTTGTGGAGTGAAGGTAAAGTCTTGCAAATAGTTGATTCGTCCATTGGTGAATCATACCCCGTCAATGAAGTTCTGAAATGTATTCAGATTGCCTTCTTGTGCCTGCAAGAGTATCCAGCTGACCGGCCAACCATGTCTGAAGTTCTTTTCATGCTAGGTAACGATGCGGACGCTCTTCCTTTACCACGAAAACTTGCATTCTTATTGGAGAGAAGCAGCAGTTCTATGGGTGGCAAGTTGTCAACCCATGAAGGATATCATTCTCTAAATAATTTCACATGTAGTGTGGTAGAAGCTAGGTAG

Protein Analysis

347

Amino Acids

38.99

Weight (kDa)

6.33

Isoelectric Point (pI)

39.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 29 - 296 4.8e-49 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 29 - 296 3.4e-46 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 16
AciI CCGC 2 cut(s) 108, 908
AcoI YGGCCR 1 cut(s) 866
AcsI RAATTY 2 cut(s) 525, 718
AcuI CTGAAG 1 cut(s) 900
AfaI GTAC 2 cut(s) 135, 305
AfiI CCNNNNNNNGG 1 cut(s) 317
AflIII ACRYGT 1 cut(s) 1019
AgsI TTSAA 3 cut(s) 197, 275, 432
AhdI GACNNNNNGTC 1 cut(s) 183
AluBI AGCT 5 cut(s) 27, 97, 642, 860, 1037
AluI AGCT 5 cut(s) 27, 97, 642, 860, 1037
Ama87I CYCGRG 1 cut(s) 181
AoxI GGCC 3 cut(s) 319, 462, 866
ApeKI GCWGC 3 cut(s) 62, 65, 957
ApoI RAATTY 2 cut(s) 525, 718
Asp700I GAANNNNTTC 1 cut(s) 616
AsuHPI GGTGA 4 cut(s) 413, 582, 634, 800
AvaI CYCGRG 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 182
BbvI GCAGC 3 cut(s) 74, 77, 969
BciVI GTATCC 1 cut(s) 864
BfaI CTAG 5 cut(s) 402, 479, 522, 896, 1038
BfuAI ACCTGC 1 cut(s) 16
BfuI GTATCC 1 cut(s) 864
BglII AGATCT 1 cut(s) 454
BisI GCNGC 3 cut(s) 63, 66, 958
BlsI GCNGC 3 cut(s) 64, 67, 959
BmcAI AGTACT 1 cut(s) 305
BmeRI GACNNNNNGTC 1 cut(s) 183
BmeT110I CYCGRG 1 cut(s) 181
BmiI GGNNCC 2 cut(s) 6, 118
BmsI GCATC 3 cut(s) 279, 472, 895
BpiI GAAGAC 1 cut(s) 182
BsaBI GATNNNNATC 1 cut(s) 293
BsaJI CCNNGG 2 cut(s) 180, 391
BsaWI WCCGGW 1 cut(s) 671
BsaXI ACNNNNNCTCC 2 cut(s) 739, 769
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse118I RCCGGY 1 cut(s) 864
Bse3DI GCAATG 2 cut(s) 475, 609
Bse8I GATNNNNATC 1 cut(s) 293
BseDI CCNNGG 2 cut(s) 180, 391
BseGI GGATG 1 cut(s) 706
BseJI GATNNNNATC 1 cut(s) 293
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMI GCAATG 2 cut(s) 475, 609
BseMII CTCAG 1 cut(s) 42
BseXI GCAGC 3 cut(s) 74, 77, 969
BshFI GGCC 3 cut(s) 321, 464, 868
BsiHKCI CYCGRG 1 cut(s) 181
BsiSI CCGG 2 cut(s) 672, 865
BslI CCNNNNNNNGG 1 cut(s) 317
BsmI GAATGC 1 cut(s) 938
BsnI GGCC 3 cut(s) 321, 464, 868
BsoBI CYCGRG 1 cut(s) 181
Bsp143I GATC 2 cut(s) 454, 538
Bsp19I CCATGG 1 cut(s) 391
BspACI CCGC 2 cut(s) 108, 908
BspANI GGCC 3 cut(s) 321, 464, 868
BspCNI CTCAG 1 cut(s) 41
BspLI GGNNCC 2 cut(s) 6, 118
BspMI ACCTGC 1 cut(s) 16
BspQI GCTCTTC 1 cut(s) 921
BsrDI GCAATG 2 cut(s) 475, 609
BsrFI RCCGGY 1 cut(s) 864
BssAI RCCGGY 1 cut(s) 864
BssECI CCNNGG 2 cut(s) 180, 391
BssMI GATC 2 cut(s) 454, 538
BssT1I CCWWGG 1 cut(s) 391
Bst6I CTCTTC 3 cut(s) 192, 276, 921
BstC8I GCNNGC 2 cut(s) 466, 845
BstDEI CTNAG 1 cut(s) 28
BstDSI CCRYGG 1 cut(s) 391
BstF5I GGATG 1 cut(s) 706
BstKTI GATC 2 cut(s) 457, 541
BstMBI GATC 2 cut(s) 454, 538
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstNSI RCATGY 2 cut(s) 734, 1023
BstV1I GCAGC 3 cut(s) 74, 77, 969
BstV2I GAAGAC 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 454
BstYI RGATCY 1 cut(s) 454
BsuI GTATCC 1 cut(s) 864
BsuRI GGCC 3 cut(s) 321, 464, 868
BtgI CCRYGG 1 cut(s) 391
BtgZI GCGATG 1 cut(s) 224
BtsCI GGATG 1 cut(s) 706
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 1 cut(s) 165
BveI ACCTGC 1 cut(s) 16
Cac8I GCNNGC 2 cut(s) 466, 845
Cfr10I RCCGGY 1 cut(s) 864
CseI GACGC 1 cut(s) 920
Csp6I GTAC 2 cut(s) 134, 304
CspCI CAANNNNNGTGG 2 cut(s) 546, 581
CviAII CATG 7 cut(s) 392, 698, 731, 874, 892, 989, 1020
CviQI GTAC 2 cut(s) 134, 304
DdeI CTNAG 1 cut(s) 28
DpnI GATC 2 cut(s) 456, 540
DpnII GATC 2 cut(s) 454, 538
DraI TTTAAA 1 cut(s) 205
DriI GACNNNNNGTC 1 cut(s) 183
EaeI YGGCCR 1 cut(s) 866
Eam1104I CTCTTC 3 cut(s) 192, 276, 921
Eam1105I GACNNNNNGTC 1 cut(s) 183
EarI CTCTTC 3 cut(s) 192, 276, 921
Eco130I CCWWGG 1 cut(s) 391
Eco147I AGGCCT 1 cut(s) 321
Eco32I GATATC 1 cut(s) 998
Eco57I CTGAAG 1 cut(s) 900
Eco88I CYCGRG 1 cut(s) 181
EcoRV GATATC 1 cut(s) 998
EcoT14I CCWWGG 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 391
FaeI CATG 7 cut(s) 395, 701, 734, 877, 895, 992, 1023
FatI CATG 7 cut(s) 391, 697, 730, 873, 891, 988, 1019
FauNDI CATATG 1 cut(s) 577
Fnu4HI GCNGC 3 cut(s) 63, 66, 958
FokI GGATG 1 cut(s) 693
Fsp4HI GCNGC 3 cut(s) 63, 66, 958
FspBI CTAG 5 cut(s) 402, 479, 522, 896, 1038
GluI GCNGC 3 cut(s) 63, 66, 958
HaeIII GGCC 3 cut(s) 321, 464, 868
HapII CCGG 2 cut(s) 672, 865
HgaI GACGC 1 cut(s) 920
Hin1II CATG 7 cut(s) 395, 701, 734, 877, 895, 992, 1023
HincII GTYRAC 1 cut(s) 984
HindII GTYRAC 1 cut(s) 984
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 4 cut(s) 396, 428, 776, 791
HpaII CCGG 2 cut(s) 672, 865
HphI GGTGA 4 cut(s) 413, 582, 634, 800
Hpy166II GTNNAC 2 cut(s) 134, 984
Hpy188I TCNGA 5 cut(s) 31, 631, 816, 828, 880
Hpy188III TCNNGA 2 cut(s) 275, 432
Hpy8I GTNNAC 2 cut(s) 134, 984
HpyAV CCTTC 4 cut(s) 606, 746, 844, 986
HpyCH4V TGCA 7 cut(s) 89, 506, 602, 607, 766, 847, 938
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
HpyF3I CTNAG 1 cut(s) 28
Hsp92II CATG 7 cut(s) 395, 701, 734, 877, 895, 992, 1023
Kzo9I GATC 2 cut(s) 454, 538
LguI GCTCTTC 1 cut(s) 921
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 8 cut(s) 21, 90, 478, 606, 685, 857, 870, 878
Lsp1109I GCAGC 3 cut(s) 74, 77, 969
LweI GCATC 3 cut(s) 279, 472, 895
MaeI CTAG 5 cut(s) 402, 479, 522, 896, 1038
MaeIII GTNAC 2 cut(s) 588, 899
MalI GATC 2 cut(s) 456, 540
MboI GATC 2 cut(s) 454, 538
MboII GAAGA 7 cut(s) 187, 209, 293, 298, 410, 687, 908
MflI RGATCY 1 cut(s) 454
MluCI AATT 7 cut(s) 192, 408, 441, 501, 525, 718, 1012
MmeI TCCRAC 2 cut(s) 259, 550
MnlI CCTC 6 cut(s) 190, 205, 246, 332, 398, 694
MroXI GAANNNNTTC 1 cut(s) 616
MseI TTAA 5 cut(s) 141, 204, 339, 437, 531
MspA1I CMGCKG 1 cut(s) 860
MspI CCGG 2 cut(s) 672, 865
Mva1269I GAATGC 1 cut(s) 938
MwoI GCNNNNNNNGC 1 cut(s) 114
NcoI CCATGG 1 cut(s) 391
NdeI CATATG 1 cut(s) 577
NdeII GATC 2 cut(s) 454, 538
NlaIII CATG 7 cut(s) 395, 701, 734, 877, 895, 992, 1023
NlaIV GGNNCC 2 cut(s) 6, 118
NmuCI GTSAC 1 cut(s) 588
NspI RCATGY 2 cut(s) 734, 1023
PceI AGGCCT 1 cut(s) 321
PciI ACATGT 1 cut(s) 1019
PciSI GCTCTTC 1 cut(s) 921
PctI GAATGC 1 cut(s) 938
PdmI GAANNNNTTC 1 cut(s) 616
PfeI GAWTC 4 cut(s) 396, 428, 776, 791
PkrI GCNGC 3 cut(s) 64, 67, 959
PscI ACATGT 1 cut(s) 1019
PspN4I GGNNCC 2 cut(s) 6, 118
PsuI RGATCY 1 cut(s) 454
PvuII CAGCTG 1 cut(s) 860
RsaI GTAC 2 cut(s) 135, 305
RsaNI GTAC 2 cut(s) 134, 304
SapI GCTCTTC 1 cut(s) 921
SaqAI TTAA 5 cut(s) 141, 204, 339, 437, 531
SatI GCNGC 3 cut(s) 63, 66, 958
Sau3AI GATC 2 cut(s) 454, 538
ScaI AGTACT 1 cut(s) 305
SfaNI GCATC 3 cut(s) 279, 472, 895
Sse9I AATT 7 cut(s) 192, 408, 441, 501, 525, 718, 1012
SseBI AGGCCT 1 cut(s) 321
SsiI CCGC 2 cut(s) 108, 908
SspMI CTAG 5 cut(s) 402, 479, 522, 896, 1038
StuI AGGCCT 1 cut(s) 321
StyI CCWWGG 1 cut(s) 391
TaqI TCGA 2 cut(s) 173, 324
TasI AATT 7 cut(s) 192, 408, 441, 501, 525, 718, 1012
TatI WGTACW 2 cut(s) 133, 303
TfiI GAWTC 4 cut(s) 396, 428, 776, 791
Tru1I TTAA 5 cut(s) 141, 204, 339, 437, 531
Tru9I TTAA 5 cut(s) 141, 204, 339, 437, 531
TscAI CASTG 1 cut(s) 165
TseFI GTSAC 1 cut(s) 588
TseI GCWGC 3 cut(s) 62, 65, 957
Tsp45I GTSAC 1 cut(s) 588
TspDTI ATGAA 6 cut(s) 294, 506, 561, 822, 880, 1005
TspGWI ACGGA 1 cut(s) 109
TspRI CASTG 1 cut(s) 165
XapI RAATTY 2 cut(s) 525, 718
XceI RCATGY 2 cut(s) 734, 1023
XmnI GAANNNNTTC 1 cut(s) 616
XspI CTAG 5 cut(s) 402, 479, 522, 896, 1038
ZrmI AGTACT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.