Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000201

Physical Location & Seq

Genomic Coordinates Forward (+)

63893653 .. 63894164

Gene Structure 512 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00044860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGGAGGCCTGTTTTCAATAAAGTCTGATGTGTATAGTTTTGGTGTTTTGTTGCTAGAAATCATTACTAGCAAAAAGAATGCTAGTTCCTATGAGAACTATCCATACTCAAATTTGATTGAACATGTTTGGGAGTTGTGGAAAGAAGGCAGAGTTGTGGAAATCATTGATTCATCTATAGGTGAATCTTACCTTGTTAGTGAAATTATAAGATGCATTCAAATCGCACTCCTGTGTGTGCAAGAATTTGCAACTGACCGGCCAACCATGTCGGCAGTTGTTTCAATGTTAAGCAACGATGCAGCTCTTCCTTCACCAAGACGACCGAAGATAATGAGTCCTAGTAGAGACCCATCTAGCAGCAAAGGAGATAGTTCAGTAAATGATGTCACATGTACAATTGTAGAAGCTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

138

Amino Acids

15.25

Weight (kDa)

4.97

Isoelectric Point (pI)

56.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	4 - 97	1.3e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21366
fragaria_vesca	FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica	MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica	Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis	pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis	RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata	RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora	Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa	Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha	Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana	Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	209
AcoI	YGGCCR	1 cut(s)	260
AcsI	RAATTY	2 cut(s)	112, 245
AfaI	GTAC	1 cut(s)	397
AflIII	ACRYGT	2 cut(s)	124, 392
AgsI	TTSAA	4 cut(s)	18, 122, 221, 285
AleI	CACNNNNGTG	1 cut(s)	232
AluBI	AGCT	2 cut(s)	305, 410
AluI	AGCT	2 cut(s)	305, 410
Alw26I	GTCTC	1 cut(s)	342
AoxI	GGCC	2 cut(s)	7, 260
ApeKI	GCWGC	2 cut(s)	302, 360
ApoI	RAATTY	2 cut(s)	112, 245
AsuHPI	GGTGA	2 cut(s)	194, 306
BbvI	GCAGC	2 cut(s)	314, 372
BccI	CCATC	1 cut(s)	361
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BcoDI	GTCTC	1 cut(s)	342
BfaI	CTAG	5 cut(s)	56, 69, 84, 342, 357
BfmI	CTRYAG	1 cut(s)	177
BisI	GCNGC	2 cut(s)	303, 361
BlsI	GCNGC	2 cut(s)	304, 362
BmsI	GCATC	2 cut(s)	203, 289
BsaI	GGTCTC	1 cut(s)	342
Bse118I	RCCGGY	1 cut(s)	258
BseXI	GCAGC	2 cut(s)	314, 372
Bsh1285I	CGRYCG	1 cut(s)	326
BshFI	GGCC	2 cut(s)	9, 262
BsiEI	CGRYCG	1 cut(s)	326
BsiSI	CCGG	1 cut(s)	259
BsmAI	GTCTC	1 cut(s)	342
BsmI	GAATGC	2 cut(s)	85, 216
BsnI	GGCC	2 cut(s)	9, 262
Bso31I	GGTCTC	1 cut(s)	342
Bsp1407I	TGTACA	1 cut(s)	395
BspANI	GGCC	2 cut(s)	9, 262
BspQI	GCTCTTC	1 cut(s)	312
BspTNI	GGTCTC	1 cut(s)	342
BsrFI	RCCGGY	1 cut(s)	258
BsrGI	TGTACA	1 cut(s)	395
BssAI	RCCGGY	1 cut(s)	258
Bst6I	CTCTTC	1 cut(s)	312
BstAUI	TGTACA	1 cut(s)	395
BstC8I	GCNNGC	1 cut(s)	412
BstMAI	GTCTC	1 cut(s)	342
BstMCI	CGRYCG	1 cut(s)	326
BstNSI	RCATGY	2 cut(s)	128, 396
BstSFI	CTRYAG	1 cut(s)	177
BstV1I	GCAGC	2 cut(s)	314, 372
BsuRI	GGCC	2 cut(s)	9, 262
Cac8I	GCNNGC	1 cut(s)	412
Cfr10I	RCCGGY	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	396
CviAII	CATG	3 cut(s)	125, 268, 393
CviJI	RGCY	4 cut(s)	9, 262, 305, 410
CviKI_1	RGCY	4 cut(s)	9, 262, 305, 410
CviQI	GTAC	1 cut(s)	396
EaeI	YGGCCR	1 cut(s)	260
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
Eco147I	AGGCCT	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	342
EcoT22I	ATGCAT	1 cut(s)	218
FaeI	CATG	3 cut(s)	128, 271, 396
FaiI	YATR	8 cut(s)	36, 93, 106, 126, 179, 209, 269, 394
FatI	CATG	3 cut(s)	124, 267, 392
Fnu4HI	GCNGC	2 cut(s)	303, 361
Fsp4HI	GCNGC	2 cut(s)	303, 361
FspBI	CTAG	5 cut(s)	56, 69, 84, 342, 357
GluI	GCNGC	2 cut(s)	303, 361
HaeIII	GGCC	2 cut(s)	9, 262
HapII	CCGG	1 cut(s)	259
Hin1II	CATG	3 cut(s)	128, 271, 396
HinfI	GANTC	3 cut(s)	170, 185, 337
HpaII	CCGG	1 cut(s)	259
HphI	GGTGA	2 cut(s)	194, 306
Hpy188I	TCNGA	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	140, 321
HpyCH4V	TGCA	4 cut(s)	216, 241, 251, 302
Hsp92II	CATG	3 cut(s)	128, 271, 396
LguI	GCTCTTC	1 cut(s)	312
LpnPI	CCDG	3 cut(s)	23, 245, 272
Lsp1109I	GCAGC	2 cut(s)	314, 372
LweI	GCATC	2 cut(s)	203, 289
MaeI	CTAG	5 cut(s)	56, 69, 84, 342, 357
MaeIII	GTNAC	1 cut(s)	388
MboII	GAAGA	2 cut(s)	299, 340
MfeI	CAATTG	1 cut(s)	399
MluCI	AATT	4 cut(s)	112, 204, 245, 399
MlyI	GAGTC	1 cut(s)	346
Mph1103I	ATGCAT	1 cut(s)	218
MseI	TTAA	1 cut(s)	290
MslI	CAYNNNNRTG	1 cut(s)	232
MspI	CCGG	1 cut(s)	259
MunI	CAATTG	1 cut(s)	399
Mva1269I	GAATGC	2 cut(s)	85, 216
NlaIII	CATG	3 cut(s)	128, 271, 396
NmuCI	GTSAC	1 cut(s)	388
NsiI	ATGCAT	1 cut(s)	218
NspI	RCATGY	2 cut(s)	128, 396
OliI	CACNNNNGTG	1 cut(s)	232
PceI	AGGCCT	1 cut(s)	9
PciI	ACATGT	2 cut(s)	124, 392
PciSI	GCTCTTC	1 cut(s)	312
PctI	GAATGC	2 cut(s)	85, 216
PfeI	GAWTC	2 cut(s)	170, 185
PkrI	GCNGC	2 cut(s)	304, 362
PleI	GAGTC	1 cut(s)	345
PpsI	GAGTC	1 cut(s)	345
PscI	ACATGT	2 cut(s)	124, 392
PsiI	TTATAA	1 cut(s)	209
PsrI	GAACNNNNNNTAC	2 cut(s)	89, 121
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
RseI	CAYNNNNRTG	1 cut(s)	232
SapI	GCTCTTC	1 cut(s)	312
SaqAI	TTAA	1 cut(s)	290
SatI	GCNGC	2 cut(s)	303, 361
SchI	GAGTC	1 cut(s)	346
SetI	ASST	4 cut(s)	184, 195, 307, 412
SfaNI	GCATC	2 cut(s)	203, 289
SfcI	CTRYAG	1 cut(s)	177
SmiMI	CAYNNNNRTG	1 cut(s)	232
Sse9I	AATT	4 cut(s)	112, 204, 245, 399
SseBI	AGGCCT	1 cut(s)	9
SspMI	CTAG	5 cut(s)	56, 69, 84, 342, 357
StuI	AGGCCT	1 cut(s)	9
TaqII	GACCGA	1 cut(s)	340
TasI	AATT	4 cut(s)	112, 204, 245, 399
TatI	WGTACW	1 cut(s)	395
TfiI	GAWTC	2 cut(s)	170, 185
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	2 cut(s)	302, 360
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	1 cut(s)	162
XapI	RAATTY	2 cut(s)	112, 245
XceI	RCATGY	2 cut(s)	128, 396
XspI	CTAG	5 cut(s)	56, 69, 84, 342, 357
Zsp2I	ATGCAT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.